RNA–Protein interactions for RNA: ENST00000533129.5

CAPN1-224, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CAPN1, Length 2,792 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-224ENST00000533129 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.55
CAPN1-224ENST00000533129 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
CAPN1-224ENST00000533129 ZCCHC6Q5VYS8 1495 aaKnown RBP26.1■■□□□ 1.77
CAPN1-224ENST00000533129 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
CAPN1-224ENST00000533129 DCAF8L2P0C7V8 631 aa25.5■■□□□ 1.67
CAPN1-224ENST00000533129 SHROOM4Q9ULL8 1493 aa25.35■■□□□ 1.65
CAPN1-224ENST00000533129 ABCC9O60706 1549 aa25.33■■□□□ 1.65
CAPN1-224ENST00000533129 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
CAPN1-224ENST00000533129 NACADO15069 1562 aa25.1■■□□□ 1.61
CAPN1-224ENST00000533129 RB1CC1Q8TDY2 1594 aa24.85■■□□□ 1.57
CAPN1-224ENST00000533129 SUPT5HO00267 1087 aaKnown RBP24.84■■□□□ 1.57
CAPN1-224ENST00000533129 SCRIBQ14160 1630 aa24.81■■□□□ 1.56
CAPN1-224ENST00000533129 HRCP23327 699 aa24.74■■□□□ 1.55
CAPN1-224ENST00000533129 CHIC1Q5VXU3 224 aa24.49■■□□□ 1.51
CAPN1-224ENST00000533129 UNC13AQ9UPW8 1703 aa24.31■■□□□ 1.48
CAPN1-224ENST00000533129 PCGF6Q9BYE7 350 aa24.26■■□□□ 1.47
CAPN1-224ENST00000533129 RSF1Q96T23 1441 aaPredicted RBP24.11■■□□□ 1.45
CAPN1-224ENST00000533129 BICRAQ9NZM4 1560 aa24.06■■□□□ 1.44
CAPN1-224ENST00000533129 CECR2Q9BXF3 1484 aa24.06■■□□□ 1.44
CAPN1-224ENST00000533129 PPARGC1BQ86YN6 1023 aaKnown RBP24.02■■□□□ 1.44
CAPN1-224ENST00000533129 BAZ1AQ9NRL2 1556 aaPredicted RBP23.95■■□□□ 1.43
CAPN1-224ENST00000533129 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
CAPN1-224ENST00000533129 PABPN1Q86U42 306 aaKnown RBP eCLIP23.9■■□□□ 1.423e-6■■■□□ 14.7
CAPN1-224ENST00000533129 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
CAPN1-224ENST00000533129 WIZO95785 1651 aa23.75■■□□□ 1.39
CAPN1-224ENST00000533129 TRIM26Q12899 539 aaPredicted RBP23.74■■□□□ 1.39
CAPN1-224ENST00000533129 LOC105371045A0A1W2PR82 267 aa23.72■■□□□ 1.39
CAPN1-224ENST00000533129 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
CAPN1-224ENST00000533129 PEG3Q9GZU2 1588 aa23.53■■□□□ 1.36
CAPN1-224ENST00000533129 ZEB1P37275 1124 aaPredicted RBP23.53■■□□□ 1.36
CAPN1-224ENST00000533129 PELP1Q8IZL8 1130 aaKnown RBP23.46■■□□□ 1.35
CAPN1-224ENST00000533129 SMARCA2P51531 1590 aa23.38■■□□□ 1.33
CAPN1-224ENST00000533129 ATAD2BQ9ULI0 1458 aa23.37■■□□□ 1.33
CAPN1-224ENST00000533129 EIF4G1Q04637 1599 aaKnown RBP23.34■■□□□ 1.33
CAPN1-224ENST00000533129 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
CAPN1-224ENST00000533129 BAZ1BQ9UIG0 1483 aaKnown RBP23.26■■□□□ 1.31
CAPN1-224ENST00000533129 NCAPD3P42695 1498 aa23.15■■□□□ 1.3
CAPN1-224ENST00000533129 HMGXB3Q12766 1538 aa23.15■■□□□ 1.3
CAPN1-224ENST00000533129 TRIM41Q8WV44 630 aa23.14■■□□□ 1.3
CAPN1-224ENST00000533129 SCAF1Q9H7N4 1312 aaKnown RBP23.11■■□□□ 1.29
CAPN1-224ENST00000533129 CC2D2AQ9P2K1 1620 aa22.95■■□□□ 1.26
CAPN1-224ENST00000533129 FAM9AQ8IZU1 332 aaPredicted RBP22.9■■□□□ 1.26
CAPN1-224ENST00000533129 ABCC8Q09428 1581 aa22.83■■□□□ 1.25
CAPN1-224ENST00000533129 ACIN1Q9UKV3 1341 aaKnown RBP22.73■■□□□ 1.23
CAPN1-224ENST00000533129 WRNQ14191 1432 aaPredicted RBP eCLIP22.7■■□□□ 1.22
CAPN1-224ENST00000533129 CFTRP13569 1480 aa22.68■■□□□ 1.22
CAPN1-224ENST00000533129 EHMT2Q96KQ7 1210 aa22.63■■□□□ 1.21
CAPN1-224ENST00000533129 CCER1Q8TC90 406 aaPredicted RBP22.61■■□□□ 1.21
CAPN1-224ENST00000533129 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.6■■□□□ 1.21
CAPN1-224ENST00000533129 NEUROD1Q13562 356 aa22.6■■□□□ 1.21
CAPN1-224ENST00000533129 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
CAPN1-224ENST00000533129 PRDM2Q13029 1718 aa22.58■■□□□ 1.21
CAPN1-224ENST00000533129 CADPSQ9ULU8 1353 aa22.56■■□□□ 1.2
CAPN1-224ENST00000533129 CENPBP07199 599 aaPredicted RBP22.54■■□□□ 1.2
CAPN1-224ENST00000533129 DIEXFQ68CQ4 756 aaKnown RBP22.51■■□□□ 1.19
CAPN1-224ENST00000533129 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
CAPN1-224ENST00000533129 MYT1Q01538 1121 aa22.5■■□□□ 1.19
CAPN1-224ENST00000533129 EEA1Q15075 1411 aa22.49■■□□□ 1.19
CAPN1-224ENST00000533129 BIVM-ERCC5R4GMW8 1640 aa22.48■■□□□ 1.19
CAPN1-224ENST00000533129 GTF3C3Q9Y5Q9 886 aa22.44■■□□□ 1.18
CAPN1-224ENST00000533129 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CAPN1-224ENST00000533129 CUX1P39880 1505 aa22.39■■□□□ 1.17
CAPN1-224ENST00000533129 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
CAPN1-224ENST00000533129 RUSC2Q8N2Y8 1516 aa22.33■■□□□ 1.17
CAPN1-224ENST00000533129 FANCD2Q9BXW9 1451 aa22.32■■□□□ 1.16
CAPN1-224ENST00000533129 CEP162Q5TB80 1403 aa22.31■■□□□ 1.16
CAPN1-224ENST00000533129 CSRNP3Q8WYN3 585 aa22.3■■□□□ 1.16
CAPN1-224ENST00000533129 NESP48681 1621 aa22.29■■□□□ 1.16
CAPN1-224ENST00000533129 TNIKQ9UKE5 1360 aa22.25■■□□□ 1.15
CAPN1-224ENST00000533129 DNAJC5BQ9UF47 199 aa22.24■■□□□ 1.15
CAPN1-224ENST00000533129 ZNF316A6NFI3 1004 aaPredicted RBP22.21■■□□□ 1.15
CAPN1-224ENST00000533129 KIF21BO75037 1637 aa22.17■■□□□ 1.14
CAPN1-224ENST00000533129 CEP164Q9UPV0 1460 aa22.17■■□□□ 1.14
CAPN1-224ENST00000533129 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
CAPN1-224ENST00000533129 GOLGA3Q08378 1498 aa22.17■■□□□ 1.14
CAPN1-224ENST00000533129 DNMBPQ6XZF7 1577 aa22.16■■□□□ 1.14
CAPN1-224ENST00000533129 FGD5Q6ZNL6 1462 aa22.13■■□□□ 1.13
CAPN1-224ENST00000533129 KIF27Q86VH2 1401 aa22.12■■□□□ 1.13
CAPN1-224ENST00000533129 TOPBP1Q92547 1522 aa22.09■■□□□ 1.13
CAPN1-224ENST00000533129 TTBK1Q5TCY1 1321 aaPredicted RBP22.08■■□□□ 1.13
CAPN1-224ENST00000533129 KIF21AQ7Z4S6 1674 aa22.03■■□□□ 1.12
CAPN1-224ENST00000533129 URB2Q14146 1524 aaKnown RBP22.02■■□□□ 1.12
CAPN1-224ENST00000533129 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
CAPN1-224ENST00000533129 CUX2O14529 1486 aa22.01■■□□□ 1.11
CAPN1-224ENST00000533129 ERICH3Q5RHP9 1530 aa22■■□□□ 1.11
CAPN1-224ENST00000533129 PRXQ9BXM0 1461 aa22■■□□□ 1.11
CAPN1-224ENST00000533129 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
CAPN1-224ENST00000533129 RAPGEF2Q9Y4G8 1499 aa21.99■■□□□ 1.11
CAPN1-224ENST00000533129 ABCA10Q8WWZ4 1543 aa21.95■■□□□ 1.1
CAPN1-224ENST00000533129 YTHDC1Q96MU7 727 aaKnown RBP21.94■■□□□ 1.1
CAPN1-224ENST00000533129 MIER1Q8N108 512 aa21.92■■□□□ 1.1
CAPN1-224ENST00000533129 RAD54L2Q9Y4B4 1467 aa21.9■■□□□ 1.1
CAPN1-224ENST00000533129 IGF1RP08069 1367 aa21.88■■□□□ 1.09
CAPN1-224ENST00000533129 MRC2Q9UBG0 1479 aa21.88■■□□□ 1.09
CAPN1-224ENST00000533129 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
CAPN1-224ENST00000533129 CLIP1P30622 1438 aa21.8■■□□□ 1.08
CAPN1-224ENST00000533129 VPS8Q8N3P4 1428 aa21.78■■□□□ 1.08
CAPN1-224ENST00000533129 CARMIL1Q5VZK9 1371 aa21.78■■□□□ 1.08
CAPN1-224ENST00000533129 HNRNPUL2Q1KMD3 747 aaKnown RBP21.77■■□□□ 1.08
CAPN1-224ENST00000533129 WDR62O43379 1518 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms