RNA–Protein interactions for RNA: ENST00000601919.5

SSBP4-212, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-212ENST00000601919 NISCHQ9Y2I1 1504 aa43.23■■■■■ 4.51
SSBP4-212ENST00000601919 CCDC180Q9P1Z9 1646 aa38.09■■■■□ 3.69
SSBP4-212ENST00000601919 ABCC9O60706 1549 aa36.31■■■■□ 3.4
SSBP4-212ENST00000601919 ZCCHC6Q5VYS8 1495 aaKnown RBP36.2■■■■□ 3.39
SSBP4-212ENST00000601919 DCAF1Q9Y4B6 1507 aa35.84■■■■□ 3.33
SSBP4-212ENST00000601919 DCAF8L2P0C7V8 631 aa35.78■■■■□ 3.32
SSBP4-212ENST00000601919 MYO15BQ96JP2 1530 aa35.67■■■■□ 3.3
SSBP4-212ENST00000601919 NACADO15069 1562 aa35.59■■■■□ 3.29
SSBP4-212ENST00000601919 RB1CC1Q8TDY2 1594 aa35.4■■■■□ 3.26
SSBP4-212ENST00000601919 SCRIBQ14160 1630 aa34.79■■■■□ 3.16
SSBP4-212ENST00000601919 SHROOM4Q9ULL8 1493 aa34.7■■■■□ 3.15
SSBP4-212ENST00000601919 UNC13AQ9UPW8 1703 aa34.59■■■■□ 3.13
SSBP4-212ENST00000601919 BICRAQ9NZM4 1560 aa34.21■■■■□ 3.07
SSBP4-212ENST00000601919 PABPN1Q86U42 306 aaKnown RBP eCLIP34.07■■■■□ 3.043e-7■■■□□ 18.8
SSBP4-212ENST00000601919 CECR2Q9BXF3 1484 aa33.52■■■□□ 2.96
SSBP4-212ENST00000601919 BAZ1AQ9NRL2 1556 aaPredicted RBP33.48■■■□□ 2.95
SSBP4-212ENST00000601919 SMARCA4P51532 1647 aa33.37■■■□□ 2.93
SSBP4-212ENST00000601919 MROH2BQ7Z745 1585 aa33.3■■■□□ 2.92
SSBP4-212ENST00000601919 EIF4G1Q04637 1599 aaKnown RBP33.27■■■□□ 2.92
SSBP4-212ENST00000601919 RSF1Q96T23 1441 aaPredicted RBP33.27■■■□□ 2.92
SSBP4-212ENST00000601919 SUPT5HO00267 1087 aaKnown RBP33.15■■■□□ 2.9
SSBP4-212ENST00000601919 PEG3Q9GZU2 1588 aa33.03■■■□□ 2.88
SSBP4-212ENST00000601919 WIZO95785 1651 aa33.03■■■□□ 2.88
SSBP4-212ENST00000601919 SMARCA2P51531 1590 aa33■■■□□ 2.87
SSBP4-212ENST00000601919 ATAD2BQ9ULI0 1458 aa32.93■■■□□ 2.86
SSBP4-212ENST00000601919 CC2D2AQ9P2K1 1620 aa32.91■■■□□ 2.86
SSBP4-212ENST00000601919 NCAPD3P42695 1498 aa32.78■■■□□ 2.84
SSBP4-212ENST00000601919 BAZ1BQ9UIG0 1483 aaKnown RBP32.75■■■□□ 2.83
SSBP4-212ENST00000601919 TOP2AP11388 1531 aaKnown RBP32.75■■■□□ 2.83
SSBP4-212ENST00000601919 HMGXB3Q12766 1538 aa32.73■■■□□ 2.83
SSBP4-212ENST00000601919 DNAJC5BQ9UF47 199 aa32.4■■■□□ 2.78
SSBP4-212ENST00000601919 CCDC88BA6NC98 1476 aa32.34■■■□□ 2.77
SSBP4-212ENST00000601919 CADPSQ9ULU8 1353 aa31.89■■■□□ 2.7
SSBP4-212ENST00000601919 CFTRP13569 1480 aa31.88■■■□□ 2.69
SSBP4-212ENST00000601919 LAMC3Q9Y6N6 1575 aa31.81■■■□□ 2.68
SSBP4-212ENST00000601919 PRDM2Q13029 1718 aa31.8■■■□□ 2.68
SSBP4-212ENST00000601919 NESP48681 1621 aa31.67■■■□□ 2.66
SSBP4-212ENST00000601919 PDS5BQ9NTI5 1447 aa31.58■■■□□ 2.65
SSBP4-212ENST00000601919 FANCD2Q9BXW9 1451 aa31.52■■■□□ 2.64
SSBP4-212ENST00000601919 CHIC1Q5VXU3 224 aa31.46■■■□□ 2.63
SSBP4-212ENST00000601919 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
SSBP4-212ENST00000601919 CEP164Q9UPV0 1460 aa31.41■■■□□ 2.62
SSBP4-212ENST00000601919 KIF21AQ7Z4S6 1674 aa31.38■■■□□ 2.61
SSBP4-212ENST00000601919 WRNQ14191 1432 aaPredicted RBP eCLIP31.38■■■□□ 2.61
SSBP4-212ENST00000601919 TRIM41Q8WV44 630 aa31.31■■■□□ 2.6
SSBP4-212ENST00000601919 ERCC6Q03468 1493 aa31.29■■■□□ 2.6
SSBP4-212ENST00000601919 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
SSBP4-212ENST00000601919 TOP2BQ02880 1626 aa31.22■■■□□ 2.59
SSBP4-212ENST00000601919 BIVM-ERCC5R4GMW8 1640 aa31.21■■■□□ 2.59
SSBP4-212ENST00000601919 CUX1P39880 1505 aa31.2■■■□□ 2.59
SSBP4-212ENST00000601919 DNMBPQ6XZF7 1577 aa31.18■■■□□ 2.58
SSBP4-212ENST00000601919 MRC2Q9UBG0 1479 aa31.16■■■□□ 2.58
SSBP4-212ENST00000601919 TOPBP1Q92547 1522 aa31.12■■■□□ 2.57
SSBP4-212ENST00000601919 URB2Q14146 1524 aaKnown RBP31.11■■■□□ 2.57
SSBP4-212ENST00000601919 THOC2Q8NI27 1593 aaKnown RBP31.02■■■□□ 2.56
SSBP4-212ENST00000601919 WDR62O43379 1518 aa31.02■■■□□ 2.56
SSBP4-212ENST00000601919 FGD5Q6ZNL6 1462 aa30.97■■■□□ 2.55
SSBP4-212ENST00000601919 POLA1P09884 1462 aaPredicted RBP30.9■■■□□ 2.54
SSBP4-212ENST00000601919 SOGA1O94964 1423 aa30.81■■■□□ 2.52
SSBP4-212ENST00000601919 EEA1Q15075 1411 aa30.74■■■□□ 2.51
SSBP4-212ENST00000601919 RAD54L2Q9Y4B4 1467 aa30.74■■■□□ 2.51
SSBP4-212ENST00000601919 ABCA10Q8WWZ4 1543 aa30.73■■■□□ 2.51
SSBP4-212ENST00000601919 CUX2O14529 1486 aa30.71■■■□□ 2.51
SSBP4-212ENST00000601919 IFT140Q96RY7 1462 aa30.71■■■□□ 2.51
SSBP4-212ENST00000601919 TARBP1Q13395 1621 aaKnown RBP30.69■■■□□ 2.5
SSBP4-212ENST00000601919 KIF27Q86VH2 1401 aa30.69■■■□□ 2.5
SSBP4-212ENST00000601919 WDR97A6NE52 1622 aa30.69■■■□□ 2.5
SSBP4-212ENST00000601919 FAM9AQ8IZU1 332 aaPredicted RBP30.59■■■□□ 2.49
SSBP4-212ENST00000601919 RUSC2Q8N2Y8 1516 aa30.58■■■□□ 2.49
SSBP4-212ENST00000601919 ABCA5Q8WWZ7 1642 aa30.52■■■□□ 2.48
SSBP4-212ENST00000601919 CSRNP3Q8WYN3 585 aa30.52■■■□□ 2.48
SSBP4-212ENST00000601919 TDRD9Q8NDG6 1382 aaKnown RBP30.5■■■□□ 2.47
SSBP4-212ENST00000601919 GAPVD1Q14C86 1478 aa30.49■■■□□ 2.47
SSBP4-212ENST00000601919 ZNF608Q9ULD9 1512 aaPredicted RBP30.43■■■□□ 2.46
SSBP4-212ENST00000601919 EIF4G3O43432 1585 aaKnown RBP30.41■■■□□ 2.46
SSBP4-212ENST00000601919 AQRO60306 1485 aaKnown RBP eCLIP30.4■■■□□ 2.465e-7■■■■■ 61.4
SSBP4-212ENST00000601919 ERICH3Q5RHP9 1530 aa30.4■■■□□ 2.46
SSBP4-212ENST00000601919 PBRM1Q86U86 1689 aa30.39■■■□□ 2.45
SSBP4-212ENST00000601919 IGF1RP08069 1367 aa30.39■■■□□ 2.45
SSBP4-212ENST00000601919 GRIN2BQ13224 1484 aa30.36■■■□□ 2.45
SSBP4-212ENST00000601919 CUL7Q14999 1698 aa30.33■■■□□ 2.45
SSBP4-212ENST00000601919 KIF21BO75037 1637 aa30.32■■■□□ 2.44
SSBP4-212ENST00000601919 PRXQ9BXM0 1461 aa30.28■■■□□ 2.44
SSBP4-212ENST00000601919 CARMIL1Q5VZK9 1371 aa30.27■■■□□ 2.44
SSBP4-212ENST00000601919 GOLGA3Q08378 1498 aa30.22■■■□□ 2.43
SSBP4-212ENST00000601919 MAGI1Q96QZ7 1491 aaPredicted RBP30.19■■■□□ 2.42
SSBP4-212ENST00000601919 RAPGEF2Q9Y4G8 1499 aa30.19■■■□□ 2.42
SSBP4-212ENST00000601919 FHAD1B1AJZ9 1412 aa30.17■■■□□ 2.42
SSBP4-212ENST00000601919 ADAMTS12P58397 1594 aa30.16■■■□□ 2.42
SSBP4-212ENST00000601919 LOC105371045A0A1W2PR82 267 aa30.16■■■□□ 2.42
SSBP4-212ENST00000601919 SNAPC4Q5SXM2 1469 aa30.16■■■□□ 2.42
SSBP4-212ENST00000601919 EHMT2Q96KQ7 1210 aa30.1■■■□□ 2.41
SSBP4-212ENST00000601919 UBTFP17480 764 aaKnown RBP30.07■■■□□ 2.4
SSBP4-212ENST00000601919 SYNJ2O15056 1496 aa30.05■■■□□ 2.4
SSBP4-212ENST00000601919 TNIKQ9UKE5 1360 aa30■■■□□ 2.39
SSBP4-212ENST00000601919 CHMP7Q8WUX9 453 aaPredicted RBP29.98■■■□□ 2.39
SSBP4-212ENST00000601919 GRIN2AQ12879 1464 aa29.96■■■□□ 2.39
SSBP4-212ENST00000601919 FBLN2P98095 1184 aa29.9■■■□□ 2.38
SSBP4-212ENST00000601919 CTTNBP2Q8WZ74 1663 aa29.89■■■□□ 2.38
SSBP4-212ENST00000601919 CHD1O14646 1710 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms