RNA–Protein interactions for RNA: ENST00000534775.1

PTPMT1-205, Transcript of protein tyrosine phosphatase, mitochondrial 1, humanhuman

TSL 1 (best) BASIC

Gene PTPMT1, Length 1,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPMT1-205ENST00000534775 NISCHQ9Y2I1 1504 aa53.86■■■■■ 6.21
PTPMT1-205ENST00000534775 CCDC180Q9P1Z9 1646 aa47.06■■■■■ 5.12
PTPMT1-205ENST00000534775 ZCCHC6Q5VYS8 1495 aaKnown RBP45.26■■■■■ 4.84
PTPMT1-205ENST00000534775 DCAF1Q9Y4B6 1507 aa44.6■■■■■ 4.73
PTPMT1-205ENST00000534775 ABCC9O60706 1549 aa44.39■■■■■ 4.7
PTPMT1-205ENST00000534775 DCAF8L2P0C7V8 631 aa44.36■■■■■ 4.69
PTPMT1-205ENST00000534775 MYO15BQ96JP2 1530 aa44.08■■■■■ 4.65
PTPMT1-205ENST00000534775 SHROOM4Q9ULL8 1493 aa43.83■■■■■ 4.61
PTPMT1-205ENST00000534775 NACADO15069 1562 aa43.79■■■■■ 4.6
PTPMT1-205ENST00000534775 RB1CC1Q8TDY2 1594 aa43.41■■■■■ 4.54
PTPMT1-205ENST00000534775 SCRIBQ14160 1630 aa43.17■■■■■ 4.5
PTPMT1-205ENST00000534775 UNC13AQ9UPW8 1703 aa42.5■■■■■ 4.39
PTPMT1-205ENST00000534775 SUPT5HO00267 1087 aaKnown RBP42.2■■■■■ 4.35
PTPMT1-205ENST00000534775 BICRAQ9NZM4 1560 aa42.02■■■■■ 4.32
PTPMT1-205ENST00000534775 CECR2Q9BXF3 1484 aa41.77■■■■■ 4.28
PTPMT1-205ENST00000534775 RSF1Q96T23 1441 aaPredicted RBP41.74■■■■■ 4.27
PTPMT1-205ENST00000534775 PABPN1Q86U42 306 aaKnown RBP eCLIP41.73■■■■■ 4.27
PTPMT1-205ENST00000534775 BAZ1AQ9NRL2 1556 aaPredicted RBP41.63■■■■■ 4.25
PTPMT1-205ENST00000534775 MROH2BQ7Z745 1585 aa41.57■■■■■ 4.24
PTPMT1-205ENST00000534775 SMARCA4P51532 1647 aa41.42■■■■■ 4.22
PTPMT1-205ENST00000534775 WIZO95785 1651 aa41.25■■■■■ 4.19
PTPMT1-205ENST00000534775 PEG3Q9GZU2 1588 aa40.94■■■■■ 4.14
PTPMT1-205ENST00000534775 TOP2AP11388 1531 aaKnown RBP40.87■■■■■ 4.13
PTPMT1-205ENST00000534775 EIF4G1Q04637 1599 aaKnown RBP40.77■■■■■ 4.12
PTPMT1-205ENST00000534775 SMARCA2P51531 1590 aa40.75■■■■■ 4.11
PTPMT1-205ENST00000534775 ATAD2BQ9ULI0 1458 aa40.69■■■■■ 4.1
PTPMT1-205ENST00000534775 BAZ1BQ9UIG0 1483 aaKnown RBP40.5■■■■■ 4.07
PTPMT1-205ENST00000534775 CHIC1Q5VXU3 224 aa40.42■■■■■ 4.06
PTPMT1-205ENST00000534775 CCDC88BA6NC98 1476 aa40.4■■■■■ 4.06
PTPMT1-205ENST00000534775 HMGXB3Q12766 1538 aa40.36■■■■■ 4.05
PTPMT1-205ENST00000534775 NCAPD3P42695 1498 aa40.35■■■■■ 4.05
PTPMT1-205ENST00000534775 CC2D2AQ9P2K1 1620 aa40.23■■■■■ 4.03
PTPMT1-205ENST00000534775 TRIM41Q8WV44 630 aa39.73■■■■□ 3.95
PTPMT1-205ENST00000534775 ABCC8Q09428 1581 aa39.53■■■■□ 3.92
PTPMT1-205ENST00000534775 DNAJC5BQ9UF47 199 aa39.51■■■■□ 3.91
PTPMT1-205ENST00000534775 CFTRP13569 1480 aa39.47■■■■□ 3.91
PTPMT1-205ENST00000534775 PRDM2Q13029 1718 aa39.39■■■■□ 3.9
PTPMT1-205ENST00000534775 WRNQ14191 1432 aaPredicted RBP eCLIP39.33■■■■□ 3.89
PTPMT1-205ENST00000534775 CADPSQ9ULU8 1353 aa39.31■■■■□ 3.88
PTPMT1-205ENST00000534775 SYNJ1O43426 1573 aa39.15■■■■□ 3.86
PTPMT1-205ENST00000534775 TOP2BQ02880 1626 aa39.04■■■■□ 3.84
PTPMT1-205ENST00000534775 LAMC3Q9Y6N6 1575 aa39.04■■■■□ 3.84
PTPMT1-205ENST00000534775 BIVM-ERCC5R4GMW8 1640 aa39.03■■■■□ 3.84
PTPMT1-205ENST00000534775 FAM9AQ8IZU1 332 aaPredicted RBP38.93■■■■□ 3.82
PTPMT1-205ENST00000534775 NESP48681 1621 aa38.9■■■■□ 3.82
PTPMT1-205ENST00000534775 FANCD2Q9BXW9 1451 aa38.89■■■■□ 3.82
PTPMT1-205ENST00000534775 CUX1P39880 1505 aa38.88■■■■□ 3.81
PTPMT1-205ENST00000534775 EEA1Q15075 1411 aa38.86■■■■□ 3.81
PTPMT1-205ENST00000534775 LOC105371045A0A1W2PR82 267 aa38.81■■■■□ 3.8
PTPMT1-205ENST00000534775 SOGA1O94964 1423 aa38.77■■■■□ 3.8
PTPMT1-205ENST00000534775 PDS5BQ9NTI5 1447 aa38.71■■■■□ 3.79
PTPMT1-205ENST00000534775 CEP164Q9UPV0 1460 aa38.67■■■■□ 3.78
PTPMT1-205ENST00000534775 RUSC2Q8N2Y8 1516 aa38.61■■■■□ 3.77
PTPMT1-205ENST00000534775 DNMBPQ6XZF7 1577 aa38.59■■■■□ 3.77
PTPMT1-205ENST00000534775 CSRNP3Q8WYN3 585 aa38.54■■■■□ 3.76
PTPMT1-205ENST00000534775 KIF21AQ7Z4S6 1674 aa38.52■■■■□ 3.76
PTPMT1-205ENST00000534775 TOPBP1Q92547 1522 aa38.47■■■■□ 3.75
PTPMT1-205ENST00000534775 FGD5Q6ZNL6 1462 aa38.46■■■■□ 3.75
PTPMT1-205ENST00000534775 URB2Q14146 1524 aaKnown RBP38.38■■■■□ 3.73
PTPMT1-205ENST00000534775 KIF27Q86VH2 1401 aa38.36■■■■□ 3.73
PTPMT1-205ENST00000534775 KIF21BO75037 1637 aa38.33■■■■□ 3.73
PTPMT1-205ENST00000534775 EHMT2Q96KQ7 1210 aa38.33■■■■□ 3.73
PTPMT1-205ENST00000534775 GOLGA3Q08378 1498 aa38.28■■■■□ 3.72
PTPMT1-205ENST00000534775 POLA1P09884 1462 aaPredicted RBP38.27■■■■□ 3.72
PTPMT1-205ENST00000534775 CUX2O14529 1486 aa38.22■■■■□ 3.71
PTPMT1-205ENST00000534775 MRC2Q9UBG0 1479 aa38.2■■■■□ 3.71
PTPMT1-205ENST00000534775 ABCA10Q8WWZ4 1543 aa38.16■■■■□ 3.7
PTPMT1-205ENST00000534775 TNIKQ9UKE5 1360 aa38.14■■■■□ 3.7
PTPMT1-205ENST00000534775 ERCC6Q03468 1493 aa38.11■■■■□ 3.69
PTPMT1-205ENST00000534775 RAD54L2Q9Y4B4 1467 aa38.1■■■■□ 3.69
PTPMT1-205ENST00000534775 ERICH3Q5RHP9 1530 aa38.08■■■■□ 3.69
PTPMT1-205ENST00000534775 PRXQ9BXM0 1461 aa38.08■■■■□ 3.69
PTPMT1-205ENST00000534775 WDR97A6NE52 1622 aa38.06■■■■□ 3.68
PTPMT1-205ENST00000534775 UBTFP17480 764 aaKnown RBP38.05■■■■□ 3.68
PTPMT1-205ENST00000534775 RAPGEF2Q9Y4G8 1499 aa38.01■■■■□ 3.68
PTPMT1-205ENST00000534775 WDR62O43379 1518 aa38.01■■■■□ 3.68
PTPMT1-205ENST00000534775 IGF1RP08069 1367 aa37.95■■■■□ 3.67
PTPMT1-205ENST00000534775 THOC2Q8NI27 1593 aaKnown RBP37.94■■■■□ 3.66
PTPMT1-205ENST00000534775 CEP162Q5TB80 1403 aa37.92■■■■□ 3.66
PTPMT1-205ENST00000534775 TARBP1Q13395 1621 aaKnown RBP37.91■■■■□ 3.66
PTPMT1-205ENST00000534775 ABCA5Q8WWZ7 1642 aa37.86■■■■□ 3.65
PTPMT1-205ENST00000534775 CARMIL1Q5VZK9 1371 aa37.79■■■■□ 3.64
PTPMT1-205ENST00000534775 CUL7Q14999 1698 aa37.79■■■■□ 3.64
PTPMT1-205ENST00000534775 IFT140Q96RY7 1462 aa37.76■■■■□ 3.63
PTPMT1-205ENST00000534775 GAPVD1Q14C86 1478 aa37.75■■■■□ 3.63
PTPMT1-205ENST00000534775 TDRD9Q8NDG6 1382 aaKnown RBP37.72■■■■□ 3.63
PTPMT1-205ENST00000534775 CLIP1P30622 1438 aa37.64■■■■□ 3.62
PTPMT1-205ENST00000534775 PBRM1Q86U86 1689 aa37.6■■■■□ 3.61
PTPMT1-205ENST00000534775 AQRO60306 1485 aaKnown RBP eCLIP37.49■■■■□ 3.598e-7■■■■□ 24
PTPMT1-205ENST00000534775 GRIN2BQ13224 1484 aa37.47■■■■□ 3.59
PTPMT1-205ENST00000534775 ZNF608Q9ULD9 1512 aaPredicted RBP37.45■■■■□ 3.59
PTPMT1-205ENST00000534775 EIF4G3O43432 1585 aaKnown RBP37.41■■■■□ 3.58
PTPMT1-205ENST00000534775 CTTNBP2Q8WZ74 1663 aa37.37■■■■□ 3.57
PTPMT1-205ENST00000534775 FHAD1B1AJZ9 1412 aa37.36■■■■□ 3.57
PTPMT1-205ENST00000534775 ADAMTS12P58397 1594 aa37.36■■■■□ 3.57
PTPMT1-205ENST00000534775 RANGAP1P46060 587 aaPredicted RBP37.34■■■■□ 3.57
PTPMT1-205ENST00000534775 VPS8Q8N3P4 1428 aa37.32■■■■□ 3.56
PTPMT1-205ENST00000534775 ARAP1Q96P48 1450 aa37.24■■■■□ 3.55
PTPMT1-205ENST00000534775 ARHGAP35Q9NRY4 1499 aa37.23■■■■□ 3.55
PTPMT1-205ENST00000534775 SNAPC4Q5SXM2 1469 aa37.19■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms