RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 NISCHQ9Y2I1 1504 aa47.63■■■■■ 5.22
YBX3-202ENST00000279550 CCDC180Q9P1Z9 1646 aa41.73■■■■■ 4.27
YBX3-202ENST00000279550 ZCCHC6Q5VYS8 1495 aaKnown RBP39.94■■■■□ 3.98
YBX3-202ENST00000279550 ABCC9O60706 1549 aa39.82■■■■□ 3.96
YBX3-202ENST00000279550 DCAF8L2P0C7V8 631 aa39.42■■■■□ 3.9
YBX3-202ENST00000279550 DCAF1Q9Y4B6 1507 aa39.41■■■■□ 3.9
YBX3-202ENST00000279550 MYO15BQ96JP2 1530 aa39.12■■■■□ 3.85
YBX3-202ENST00000279550 NACADO15069 1562 aa38.98■■■■□ 3.83
YBX3-202ENST00000279550 RB1CC1Q8TDY2 1594 aa38.74■■■■□ 3.79
YBX3-202ENST00000279550 SHROOM4Q9ULL8 1493 aa38.5■■■■□ 3.75
YBX3-202ENST00000279550 SCRIBQ14160 1630 aa38.29■■■■□ 3.72
YBX3-202ENST00000279550 UNC13AQ9UPW8 1703 aa37.89■■■■□ 3.66
YBX3-202ENST00000279550 BICRAQ9NZM4 1560 aa37.56■■■■□ 3.6
YBX3-202ENST00000279550 PABPN1Q86U42 306 aaKnown RBP eCLIP37.45■■■■□ 3.593e-7■■□□□ 12.6
YBX3-202ENST00000279550 SUPT5HO00267 1087 aaKnown RBP37.08■■■■□ 3.53
YBX3-202ENST00000279550 CECR2Q9BXF3 1484 aa37.02■■■■□ 3.52
YBX3-202ENST00000279550 BAZ1AQ9NRL2 1556 aaPredicted RBP36.82■■■■□ 3.48
YBX3-202ENST00000279550 RSF1Q96T23 1441 aaPredicted RBP36.78■■■■□ 3.48
YBX3-202ENST00000279550 MROH2BQ7Z745 1585 aa36.77■■■■□ 3.48
YBX3-202ENST00000279550 SMARCA4P51532 1647 aa36.69■■■■□ 3.46
YBX3-202ENST00000279550 EIF4G1Q04637 1599 aaKnown RBP36.48■■■■□ 3.43
YBX3-202ENST00000279550 WIZO95785 1651 aa36.42■■■■□ 3.42
YBX3-202ENST00000279550 PEG3Q9GZU2 1588 aa36.3■■■■□ 3.4
YBX3-202ENST00000279550 ATAD2BQ9ULI0 1458 aa36.21■■■■□ 3.39
YBX3-202ENST00000279550 SMARCA2P51531 1590 aa36.19■■■■□ 3.38
YBX3-202ENST00000279550 TOP2AP11388 1531 aaKnown RBP36.07■■■■□ 3.36
YBX3-202ENST00000279550 CC2D2AQ9P2K1 1620 aa36.03■■■■□ 3.36
YBX3-202ENST00000279550 NCAPD3P42695 1498 aa35.98■■■■□ 3.35
YBX3-202ENST00000279550 BAZ1BQ9UIG0 1483 aaKnown RBP35.98■■■■□ 3.35
YBX3-202ENST00000279550 HMGXB3Q12766 1538 aa35.9■■■■□ 3.34
YBX3-202ENST00000279550 CHIC1Q5VXU3 224 aa35.71■■■■□ 3.31
YBX3-202ENST00000279550 CCDC88BA6NC98 1476 aa35.68■■■■□ 3.3
YBX3-202ENST00000279550 DNAJC5BQ9UF47 199 aa35.49■■■■□ 3.27
YBX3-202ENST00000279550 CFTRP13569 1480 aa35.07■■■■□ 3.2
YBX3-202ENST00000279550 CADPSQ9ULU8 1353 aa35.02■■■■□ 3.2
YBX3-202ENST00000279550 LAMC3Q9Y6N6 1575 aa34.83■■■■□ 3.17
YBX3-202ENST00000279550 PRDM2Q13029 1718 aa34.82■■■■□ 3.16
YBX3-202ENST00000279550 NESP48681 1621 aa34.82■■■■□ 3.16
YBX3-202ENST00000279550 ABCC8Q09428 1581 aa34.78■■■■□ 3.16
YBX3-202ENST00000279550 TRIM41Q8WV44 630 aa34.72■■■■□ 3.15
YBX3-202ENST00000279550 WRNQ14191 1432 aaPredicted RBP eCLIP34.64■■■■□ 3.14
YBX3-202ENST00000279550 FANCD2Q9BXW9 1451 aa34.63■■■■□ 3.13
YBX3-202ENST00000279550 PDS5BQ9NTI5 1447 aa34.57■■■■□ 3.12
YBX3-202ENST00000279550 SYNJ1O43426 1573 aa34.49■■■■□ 3.11
YBX3-202ENST00000279550 CEP164Q9UPV0 1460 aa34.46■■■■□ 3.11
YBX3-202ENST00000279550 LOC105371045A0A1W2PR82 267 aa34.45■■■■□ 3.11
YBX3-202ENST00000279550 CUX1P39880 1505 aa34.41■■■■□ 3.1
YBX3-202ENST00000279550 TOP2BQ02880 1626 aa34.4■■■■□ 3.1
YBX3-202ENST00000279550 KIF21AQ7Z4S6 1674 aa34.39■■■■□ 3.1
YBX3-202ENST00000279550 BIVM-ERCC5R4GMW8 1640 aa34.37■■■■□ 3.09
YBX3-202ENST00000279550 FAM9AQ8IZU1 332 aaPredicted RBP34.25■■■■□ 3.07
YBX3-202ENST00000279550 DNMBPQ6XZF7 1577 aa34.24■■■■□ 3.07
YBX3-202ENST00000279550 URB2Q14146 1524 aaKnown RBP34.22■■■■□ 3.07
YBX3-202ENST00000279550 TOPBP1Q92547 1522 aa34.2■■■■□ 3.07
YBX3-202ENST00000279550 ERCC6Q03468 1493 aa34.2■■■■□ 3.07
YBX3-202ENST00000279550 MRC2Q9UBG0 1479 aa34.14■■■■□ 3.06
YBX3-202ENST00000279550 FGD5Q6ZNL6 1462 aa34.1■■■■□ 3.05
YBX3-202ENST00000279550 SOGA1O94964 1423 aa34.05■■■■□ 3.04
YBX3-202ENST00000279550 POLA1P09884 1462 aaPredicted RBP34.02■■■■□ 3.04
YBX3-202ENST00000279550 WDR62O43379 1518 aa33.98■■■■□ 3.03
YBX3-202ENST00000279550 THOC2Q8NI27 1593 aaKnown RBP33.97■■■■□ 3.03
YBX3-202ENST00000279550 EEA1Q15075 1411 aa33.93■■■■□ 3.02
YBX3-202ENST00000279550 RUSC2Q8N2Y8 1516 aa33.93■■■■□ 3.02
YBX3-202ENST00000279550 RAD54L2Q9Y4B4 1467 aa33.88■■■■□ 3.01
YBX3-202ENST00000279550 EHMT2Q96KQ7 1210 aa33.84■■■■□ 3.01
YBX3-202ENST00000279550 ABCA10Q8WWZ4 1543 aa33.81■■■■□ 3
YBX3-202ENST00000279550 KIF27Q86VH2 1401 aa33.8■■■■□ 3
YBX3-202ENST00000279550 CUX2O14529 1486 aa33.8■■■■□ 3
YBX3-202ENST00000279550 CSRNP3Q8WYN3 585 aa33.76■■■□□ 2.99
YBX3-202ENST00000279550 TARBP1Q13395 1621 aaKnown RBP33.72■■■□□ 2.99
YBX3-202ENST00000279550 WDR97A6NE52 1622 aa33.72■■■□□ 2.99
YBX3-202ENST00000279550 IFT140Q96RY7 1462 aa33.66■■■□□ 2.98
YBX3-202ENST00000279550 TDRD9Q8NDG6 1382 aaKnown RBP33.59■■■□□ 2.97
YBX3-202ENST00000279550 ABCA5Q8WWZ7 1642 aa33.55■■■□□ 2.96
YBX3-202ENST00000279550 IGF1RP08069 1367 aa33.54■■■□□ 2.96
YBX3-202ENST00000279550 GAPVD1Q14C86 1478 aa33.52■■■□□ 2.96
YBX3-202ENST00000279550 KIF21BO75037 1637 aa33.49■■■□□ 2.95
YBX3-202ENST00000279550 ZNF608Q9ULD9 1512 aaPredicted RBP33.48■■■□□ 2.95
YBX3-202ENST00000279550 PRXQ9BXM0 1461 aa33.47■■■□□ 2.95
YBX3-202ENST00000279550 AQRO60306 1485 aaKnown RBP eCLIP33.45■■■□□ 2.949e-7■■■■□ 22.7
YBX3-202ENST00000279550 GOLGA3Q08378 1498 aa33.42■■■□□ 2.94
YBX3-202ENST00000279550 ERICH3Q5RHP9 1530 aa33.41■■■□□ 2.94
YBX3-202ENST00000279550 RAPGEF2Q9Y4G8 1499 aa33.38■■■□□ 2.93
YBX3-202ENST00000279550 CARMIL1Q5VZK9 1371 aa33.36■■■□□ 2.93
YBX3-202ENST00000279550 EIF4G3O43432 1585 aaKnown RBP33.36■■■□□ 2.93
YBX3-202ENST00000279550 PBRM1Q86U86 1689 aa33.33■■■□□ 2.93
YBX3-202ENST00000279550 GRIN2BQ13224 1484 aa33.33■■■□□ 2.93
YBX3-202ENST00000279550 CUL7Q14999 1698 aa33.32■■■□□ 2.93
YBX3-202ENST00000279550 TNIKQ9UKE5 1360 aa33.32■■■□□ 2.92
YBX3-202ENST00000279550 PCGF6Q9BYE7 350 aa33.3■■■□□ 2.92
YBX3-202ENST00000279550 UBTFP17480 764 aaKnown RBP33.28■■■□□ 2.92
YBX3-202ENST00000279550 CEP162Q5TB80 1403 aa33.23■■■□□ 2.91
YBX3-202ENST00000279550 FHAD1B1AJZ9 1412 aa33.15■■■□□ 2.9
YBX3-202ENST00000279550 ADAMTS12P58397 1594 aa33.15■■■□□ 2.9
YBX3-202ENST00000279550 SNAPC4Q5SXM2 1469 aa33.15■■■□□ 2.9
YBX3-202ENST00000279550 MAGI1Q96QZ7 1491 aaPredicted RBP33.1■■■□□ 2.89
YBX3-202ENST00000279550 TRIM26Q12899 539 aaPredicted RBP33.08■■■□□ 2.89
YBX3-202ENST00000279550 SYNJ2O15056 1496 aa32.97■■■□□ 2.87
YBX3-202ENST00000279550 GRIN2AQ12879 1464 aa32.92■■■□□ 2.86
YBX3-202ENST00000279550 CHMP7Q8WUX9 453 aaPredicted RBP32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms