RNA–Protein interactions for RNA: ENST00000558065.1

SEMA4B-204, Transcript of semaphorin 4B, humanhuman

TSL 1 (best)

Gene SEMA4B, Length 3,751 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4B-204ENST00000558065 PELP1Q8IZL8 1130 aaKnown RBP19.98■□□□□ 0.79
SEMA4B-204ENST00000558065 MYT1Q01538 1121 aa19.56■□□□□ 0.72
SEMA4B-204ENST00000558065 HRCP23327 699 aa18.88■□□□□ 0.61
SEMA4B-204ENST00000558065 TTBK1Q5TCY1 1321 aaPredicted RBP18.8■□□□□ 0.6
SEMA4B-204ENST00000558065 SCAF1Q9H7N4 1312 aaKnown RBP18.58■□□□□ 0.56
SEMA4B-204ENST00000558065 PRKCSHP14314 528 aaPredicted RBP18.57■□□□□ 0.56
SEMA4B-204ENST00000558065 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
SEMA4B-204ENST00000558065 BCL11AQ9H165 835 aa18.22■□□□□ 0.51
SEMA4B-204ENST00000558065 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
SEMA4B-204ENST00000558065 APLP2Q06481 763 aa18.06■□□□□ 0.48
SEMA4B-204ENST00000558065 ERICH6Q7L0X2 663 aa17.93■□□□□ 0.46
SEMA4B-204ENST00000558065 NISCHQ9Y2I1 1504 aa17.78■□□□□ 0.44
SEMA4B-204ENST00000558065 PCGF6Q9BYE7 350 aa17.76■□□□□ 0.43
SEMA4B-204ENST00000558065 ACIN1Q9UKV3 1341 aaKnown RBP17.67■□□□□ 0.42
SEMA4B-204ENST00000558065 CENPBP07199 599 aaPredicted RBP17.64■□□□□ 0.42
SEMA4B-204ENST00000558065 NEUROD1Q13562 356 aa17.58■□□□□ 0.4
SEMA4B-204ENST00000558065 GTF3C3Q9Y5Q9 886 aa17.55■□□□□ 0.4
SEMA4B-204ENST00000558065 SLC24A1O60721 1099 aa17.53■□□□□ 0.4
SEMA4B-204ENST00000558065 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.4
SEMA4B-204ENST00000558065 ANP32EQ9BTT0 268 aa17.36■□□□□ 0.37
SEMA4B-204ENST00000558065 ZEB1P37275 1124 aaPredicted RBP17.25■□□□□ 0.35
SEMA4B-204ENST00000558065 CSRNP3Q8WYN3 585 aa17.24■□□□□ 0.35
SEMA4B-204ENST00000558065 CCDC180Q9P1Z9 1646 aa17.13■□□□□ 0.33
SEMA4B-204ENST00000558065 DCAF1Q9Y4B6 1507 aa17.05■□□□□ 0.32
SEMA4B-204ENST00000558065 DAXXQ9UER7 740 aaPredicted RBP16.98■□□□□ 0.31
SEMA4B-204ENST00000558065 ANO8Q9HCE9 1232 aaPredicted RBP16.94■□□□□ 0.3
SEMA4B-204ENST00000558065 TRIM26Q12899 539 aaPredicted RBP16.9■□□□□ 0.3
SEMA4B-204ENST00000558065 EIF5BO60841 1220 aaKnown RBP16.9■□□□□ 0.3
SEMA4B-204ENST00000558065 UBE2Q2Q8WVN8 375 aa16.86■□□□□ 0.29
SEMA4B-204ENST00000558065 DCAF8L2P0C7V8 631 aa16.8■□□□□ 0.28
SEMA4B-204ENST00000558065 TSHZ2Q9NRE2 1034 aa16.75■□□□□ 0.27
SEMA4B-204ENST00000558065 PLEKHG5O94827 1062 aa16.68■□□□□ 0.26
SEMA4B-204ENST00000558065 DIEXFQ68CQ4 756 aaKnown RBP16.64■□□□□ 0.25
SEMA4B-204ENST00000558065 SALL2Q9Y467 1007 aaPredicted RBP16.58■□□□□ 0.25
SEMA4B-204ENST00000558065 CHIC1Q5VXU3 224 aa16.55■□□□□ 0.24
SEMA4B-204ENST00000558065 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
SEMA4B-204ENST00000558065 CCDC136Q96JN2 1154 aa16.48■□□□□ 0.23
SEMA4B-204ENST00000558065 SUPT16HQ9Y5B9 1047 aaKnown RBP16.46■□□□□ 0.23
SEMA4B-204ENST00000558065 SHROOM4Q9ULL8 1493 aa16.44■□□□□ 0.22
SEMA4B-204ENST00000558065 YTHDC1Q96MU7 727 aaKnown RBP16.43■□□□□ 0.22
SEMA4B-204ENST00000558065 PKNOX2Q96KN3 472 aa16.43■□□□□ 0.22
SEMA4B-204ENST00000558065 PODXL2Q9NZ53 605 aa16.38■□□□□ 0.21
SEMA4B-204ENST00000558065 CLSPNQ9HAW4 1339 aa16.34■□□□□ 0.21
SEMA4B-204ENST00000558065 ERICH6BQ5W0A0 696 aa16.33■□□□□ 0.21
SEMA4B-204ENST00000558065 TRIM41Q8WV44 630 aa16.33■□□□□ 0.21
SEMA4B-204ENST00000558065 MSH5O43196 834 aa16.27■□□□□ 0.19
SEMA4B-204ENST00000558065 LOC105371045A0A1W2PR82 267 aa16.26■□□□□ 0.19
SEMA4B-204ENST00000558065 DEKP35659 375 aaKnown RBP16.23■□□□□ 0.19
SEMA4B-204ENST00000558065 RBM19Q9Y4C8 960 aaKnown RBP16.18■□□□□ 0.18
SEMA4B-204ENST00000558065 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.18■□□□□ 0.18
SEMA4B-204ENST00000558065 MYT1LQ9UL68 1186 aa16.18■□□□□ 0.18
SEMA4B-204ENST00000558065 MIER1Q8N108 512 aa16.13■□□□□ 0.17
SEMA4B-204ENST00000558065 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
SEMA4B-204ENST00000558065 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
SEMA4B-204ENST00000558065 IL27Q8NEV9 243 aa15.98■□□□□ 0.15
SEMA4B-204ENST00000558065 CCER1Q8TC90 406 aaPredicted RBP15.97■□□□□ 0.15
SEMA4B-204ENST00000558065 FANCIQ9NVI1 1328 aa15.94■□□□□ 0.14
SEMA4B-204ENST00000558065 RTN4Q9NQC3 1192 aaKnown RBP15.88■□□□□ 0.13
SEMA4B-204ENST00000558065 NEFLP07196 543 aa15.82■□□□□ 0.12
SEMA4B-204ENST00000558065 BCANQ96GW7 911 aa15.8■□□□□ 0.12
SEMA4B-204ENST00000558065 ZMYND15Q9H091 742 aa15.8■□□□□ 0.12
SEMA4B-204ENST00000558065 PDE4CQ08493 712 aa15.74■□□□□ 0.11
SEMA4B-204ENST00000558065 FGD1P98174 961 aa15.73■□□□□ 0.11
SEMA4B-204ENST00000558065 PDIA4P13667 645 aaKnown RBP15.7■□□□□ 0.1
SEMA4B-204ENST00000558065 AEBP2Q6ZN18 517 aaPredicted RBP15.69■□□□□ 0.1
SEMA4B-204ENST00000558065 FKBP8Q14318 412 aa15.65■□□□□ 0.1
SEMA4B-204ENST00000558065 AAMPQ13685 434 aa15.65■□□□□ 0.1
SEMA4B-204ENST00000558065 A0A0U1RQG5 324 aaPredicted RBP15.64■□□□□ 0.09
SEMA4B-204ENST00000558065 VSIG10Q8N0Z9 540 aa15.62■□□□□ 0.09
SEMA4B-204ENST00000558065 TIMELESSQ9UNS1 1208 aa15.62■□□□□ 0.09
SEMA4B-204ENST00000558065 NBR1Q14596 966 aa15.61■□□□□ 0.09
SEMA4B-204ENST00000558065 GLIPR1L2Q4G1C9 344 aa15.6■□□□□ 0.09
SEMA4B-204ENST00000558065 ITGAEP38570 1179 aa15.59■□□□□ 0.09
SEMA4B-204ENST00000558065 KLHL34Q8N239 644 aa15.59■□□□□ 0.09
SEMA4B-204ENST00000558065 RBM10P98175 930 aaKnown RBP15.58■□□□□ 0.08
SEMA4B-204ENST00000558065 BCL11BQ9C0K0 894 aaPredicted RBP15.58■□□□□ 0.08
SEMA4B-204ENST00000558065 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
SEMA4B-204ENST00000558065 C11orf95C9JLR9 678 aaPredicted RBP15.55■□□□□ 0.08
SEMA4B-204ENST00000558065 RSPH6AQ9H0K4 717 aa15.49■□□□□ 0.07
SEMA4B-204ENST00000558065 NOP58Q9Y2X3 529 aaKnown RBP15.48■□□□□ 0.07
SEMA4B-204ENST00000558065 PAK3O75914 559 aaPredicted RBP15.48■□□□□ 0.07
SEMA4B-204ENST00000558065 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
SEMA4B-204ENST00000558065 WASHC2AQ641Q2 1341 aa15.42■□□□□ 0.06
SEMA4B-204ENST00000558065 WASHC2CQ9Y4E1 1318 aa15.41■□□□□ 0.06
SEMA4B-204ENST00000558065 RTL5Q5HYW3 569 aaPredicted RBP15.39■□□□□ 0.05
SEMA4B-204ENST00000558065 BRPF3Q9ULD4 1205 aa15.37■□□□□ 0.05
SEMA4B-204ENST00000558065 CDK11AQ9UQ88 783 aaPredicted RBP15.37■□□□□ 0.05
SEMA4B-204ENST00000558065 TAF7LQ5H9L4 462 aa15.35■□□□□ 0.05
SEMA4B-204ENST00000558065 KCNH8Q96L42 1107 aa15.31■□□□□ 0.04
SEMA4B-204ENST00000558065 ARXQ96QS3 562 aa15.28■□□□□ 0.04
SEMA4B-204ENST00000558065 RANGAP1P46060 587 aaPredicted RBP15.25■□□□□ 0.03
SEMA4B-204ENST00000558065 FAM43AQ8N2R8 423 aa15.19■□□□□ 0.02
SEMA4B-204ENST00000558065 RRP9O43818 475 aaKnown RBP15.18■□□□□ 0.02
SEMA4B-204ENST00000558065 HSP90AA2PQ14568 343 aaPredicted RBP15.16■□□□□ 0.02
SEMA4B-204ENST00000558065 PRDM4Q9UKN5 801 aa15.16■□□□□ 0.02
SEMA4B-204ENST00000558065 USP35Q9P2H5 1018 aa15.14■□□□□ 0.01
SEMA4B-204ENST00000558065 IPO9Q96P70 1041 aaKnown RBP15.14■□□□□ 0.01
SEMA4B-204ENST00000558065 PAXIP1Q6ZW49 1069 aaPredicted RBP15.13■□□□□ 0.01
SEMA4B-204ENST00000558065 NEFMP07197 916 aa15.12■□□□□ 0.01
SEMA4B-204ENST00000558065 RSPH4AQ5TD94 716 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms