RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 NISCHQ9Y2I1 1504 aa22.03■■□□□ 1.12
UBBP4-201ENST00000583708 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
UBBP4-201ENST00000583708 ABCC9O60706 1549 aa18.72■□□□□ 0.59
UBBP4-201ENST00000583708 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
UBBP4-201ENST00000583708 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
UBBP4-201ENST00000583708 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
UBBP4-201ENST00000583708 NACADO15069 1562 aa18.3■□□□□ 0.52
UBBP4-201ENST00000583708 DCAF8L2P0C7V8 631 aa18.26■□□□□ 0.51
UBBP4-201ENST00000583708 RB1CC1Q8TDY2 1594 aa18.23■□□□□ 0.51
UBBP4-201ENST00000583708 SCRIBQ14160 1630 aa17.64■□□□□ 0.41
UBBP4-201ENST00000583708 SHROOM4Q9ULL8 1493 aa17.63■□□□□ 0.41
UBBP4-201ENST00000583708 UNC13AQ9UPW8 1703 aa17.61■□□□□ 0.41
UBBP4-201ENST00000583708 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
UBBP4-201ENST00000583708 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
UBBP4-201ENST00000583708 EIF4G1Q04637 1599 aaKnown RBP17.12■□□□□ 0.33
UBBP4-201ENST00000583708 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
UBBP4-201ENST00000583708 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
UBBP4-201ENST00000583708 SMARCA4P51532 1647 aa16.98■□□□□ 0.31
UBBP4-201ENST00000583708 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
UBBP4-201ENST00000583708 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.3
UBBP4-201ENST00000583708 SMARCA2P51531 1590 aa16.92■□□□□ 0.3
UBBP4-201ENST00000583708 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
UBBP4-201ENST00000583708 MROH2BQ7Z745 1585 aa16.9■□□□□ 0.3
UBBP4-201ENST00000583708 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.3
UBBP4-201ENST00000583708 ATAD2BQ9ULI0 1458 aa16.89■□□□□ 0.29
UBBP4-201ENST00000583708 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
UBBP4-201ENST00000583708 HMGXB3Q12766 1538 aa16.8■□□□□ 0.28
UBBP4-201ENST00000583708 BAZ1BQ9UIG0 1483 aaKnown RBP16.75■□□□□ 0.27
UBBP4-201ENST00000583708 WIZO95785 1651 aa16.68■□□□□ 0.26
UBBP4-201ENST00000583708 TOP2AP11388 1531 aaKnown RBP16.62■□□□□ 0.25
UBBP4-201ENST00000583708 SUPT5HO00267 1087 aaKnown RBP16.58■□□□□ 0.24
UBBP4-201ENST00000583708 CCDC88BA6NC98 1476 aa16.42■□□□□ 0.22
UBBP4-201ENST00000583708 CADPSQ9ULU8 1353 aa16.42■□□□□ 0.22
UBBP4-201ENST00000583708 LAMC3Q9Y6N6 1575 aa16.38■□□□□ 0.21
UBBP4-201ENST00000583708 CFTRP13569 1480 aa16.35■□□□□ 0.21
UBBP4-201ENST00000583708 PDS5BQ9NTI5 1447 aa16.33■□□□□ 0.2
UBBP4-201ENST00000583708 NESP48681 1621 aa16.23■□□□□ 0.19
UBBP4-201ENST00000583708 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
UBBP4-201ENST00000583708 FANCD2Q9BXW9 1451 aa16.16■□□□□ 0.18
UBBP4-201ENST00000583708 CEP164Q9UPV0 1460 aa16.13■□□□□ 0.17
UBBP4-201ENST00000583708 PRDM2Q13029 1718 aa16.11■□□□□ 0.17
UBBP4-201ENST00000583708 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
UBBP4-201ENST00000583708 MRC2Q9UBG0 1479 aa16.06■□□□□ 0.16
UBBP4-201ENST00000583708 KIF21AQ7Z4S6 1674 aa16.02■□□□□ 0.15
UBBP4-201ENST00000583708 CUX2O14529 1486 aa15.99■□□□□ 0.15
UBBP4-201ENST00000583708 WDR62O43379 1518 aa15.97■□□□□ 0.15
UBBP4-201ENST00000583708 THOC2Q8NI27 1593 aaKnown RBP15.96■□□□□ 0.14
UBBP4-201ENST00000583708 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
UBBP4-201ENST00000583708 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
UBBP4-201ENST00000583708 WRNQ14191 1432 aaPredicted RBP eCLIP15.92■□□□□ 0.14
UBBP4-201ENST00000583708 TOPBP1Q92547 1522 aa15.91■□□□□ 0.14
UBBP4-201ENST00000583708 CUX1P39880 1505 aa15.85■□□□□ 0.13
UBBP4-201ENST00000583708 IFT140Q96RY7 1462 aa15.82■□□□□ 0.12
UBBP4-201ENST00000583708 TOP2BQ02880 1626 aa15.82■□□□□ 0.12
UBBP4-201ENST00000583708 POLA1P09884 1462 aaPredicted RBP15.79■□□□□ 0.12
UBBP4-201ENST00000583708 SOGA1O94964 1423 aa15.79■□□□□ 0.12
UBBP4-201ENST00000583708 BIVM-ERCC5R4GMW8 1640 aa15.79■□□□□ 0.12
UBBP4-201ENST00000583708 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
UBBP4-201ENST00000583708 TRIM41Q8WV44 630 aa15.75■□□□□ 0.11
UBBP4-201ENST00000583708 SYNJ1O43426 1573 aa15.74■□□□□ 0.11
UBBP4-201ENST00000583708 WDR97A6NE52 1622 aa15.72■□□□□ 0.11
UBBP4-201ENST00000583708 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
UBBP4-201ENST00000583708 TARBP1Q13395 1621 aaKnown RBP15.69■□□□□ 0.1
UBBP4-201ENST00000583708 CHIC1Q5VXU3 224 aa15.68■□□□□ 0.1
UBBP4-201ENST00000583708 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
UBBP4-201ENST00000583708 TDRD9Q8NDG6 1382 aaKnown RBP15.62■□□□□ 0.09
UBBP4-201ENST00000583708 KIF27Q86VH2 1401 aa15.61■□□□□ 0.09
UBBP4-201ENST00000583708 ZNF608Q9ULD9 1512 aaPredicted RBP15.6■□□□□ 0.09
UBBP4-201ENST00000583708 GAPVD1Q14C86 1478 aa15.59■□□□□ 0.09
UBBP4-201ENST00000583708 AQRO60306 1485 aaKnown RBP eCLIP15.59■□□□□ 0.09
UBBP4-201ENST00000583708 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
UBBP4-201ENST00000583708 EEA1Q15075 1411 aa15.55■□□□□ 0.08
UBBP4-201ENST00000583708 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
UBBP4-201ENST00000583708 ERICH3Q5RHP9 1530 aa15.53■□□□□ 0.08
UBBP4-201ENST00000583708 ABCA5Q8WWZ7 1642 aa15.53■□□□□ 0.08
UBBP4-201ENST00000583708 MAGI1Q96QZ7 1491 aaPredicted RBP15.52■□□□□ 0.08
UBBP4-201ENST00000583708 IGF1RP08069 1367 aa15.5■□□□□ 0.07
UBBP4-201ENST00000583708 FHAD1B1AJZ9 1412 aa15.46■□□□□ 0.07
UBBP4-201ENST00000583708 CHMP7Q8WUX9 453 aaPredicted RBP15.46■□□□□ 0.07
UBBP4-201ENST00000583708 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
UBBP4-201ENST00000583708 SYNJ2O15056 1496 aa15.44■□□□□ 0.06
UBBP4-201ENST00000583708 SNAPC4Q5SXM2 1469 aa15.44■□□□□ 0.06
UBBP4-201ENST00000583708 CARMIL1Q5VZK9 1371 aa15.42■□□□□ 0.06
UBBP4-201ENST00000583708 OSCARQ8IYS5 282 aa15.42■□□□□ 0.06
UBBP4-201ENST00000583708 PBRM1Q86U86 1689 aa15.41■□□□□ 0.06
UBBP4-201ENST00000583708 CUL7Q14999 1698 aa15.4■□□□□ 0.06
UBBP4-201ENST00000583708 FBLN2P98095 1184 aa15.38■□□□□ 0.05
UBBP4-201ENST00000583708 RUSC2Q8N2Y8 1516 aa15.37■□□□□ 0.05
UBBP4-201ENST00000583708 ADAMTS12P58397 1594 aa15.36■□□□□ 0.05
UBBP4-201ENST00000583708 GRIN2AQ12879 1464 aa15.34■□□□□ 0.05
UBBP4-201ENST00000583708 PRXQ9BXM0 1461 aa15.34■□□□□ 0.05
UBBP4-201ENST00000583708 RAPGEF2Q9Y4G8 1499 aa15.34■□□□□ 0.05
UBBP4-201ENST00000583708 NUP160Q12769 1436 aa15.29■□□□□ 0.04
UBBP4-201ENST00000583708 FAM9AQ8IZU1 332 aaPredicted RBP15.27■□□□□ 0.04
UBBP4-201ENST00000583708 CHD1O14646 1710 aa15.25■□□□□ 0.03
UBBP4-201ENST00000583708 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
UBBP4-201ENST00000583708 DNAJC5Q9H3Z4 198 aa15.23■□□□□ 0.03
UBBP4-201ENST00000583708 KIF21BO75037 1637 aa15.22■□□□□ 0.03
UBBP4-201ENST00000583708 CLASP1Q7Z460 1538 aa15.19■□□□□ 0.02
UBBP4-201ENST00000583708 JPH4Q96JJ6 628 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms