RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 NISCHQ9Y2I1 1504 aa38.77■■■■□ 3.8
CAPN1-226ENST00000533820 SHROOM4Q9ULL8 1493 aa34.03■■■■□ 3.04
CAPN1-226ENST00000533820 SUPT5HO00267 1087 aaKnown RBP33.52■■■□□ 2.96
CAPN1-226ENST00000533820 DCAF8L2P0C7V8 631 aa32.98■■■□□ 2.87
CAPN1-226ENST00000533820 ZCCHC6Q5VYS8 1495 aaKnown RBP32.78■■■□□ 2.84
CAPN1-226ENST00000533820 CCDC180Q9P1Z9 1646 aa32.48■■■□□ 2.79
CAPN1-226ENST00000533820 CHIC1Q5VXU3 224 aa32.4■■■□□ 2.78
CAPN1-226ENST00000533820 MYO15BQ96JP2 1530 aa32.34■■■□□ 2.77
CAPN1-226ENST00000533820 PCGF6Q9BYE7 350 aa31.98■■■□□ 2.71
CAPN1-226ENST00000533820 HRCP23327 699 aa31.89■■■□□ 2.7
CAPN1-226ENST00000533820 LOC105371045A0A1W2PR82 267 aa31.75■■■□□ 2.67
CAPN1-226ENST00000533820 PPARGC1BQ86YN6 1023 aaKnown RBP31.57■■■□□ 2.64
CAPN1-226ENST00000533820 DCAF1Q9Y4B6 1507 aa31.46■■■□□ 2.63
CAPN1-226ENST00000533820 PELP1Q8IZL8 1130 aaKnown RBP31.35■■■□□ 2.61
CAPN1-226ENST00000533820 EHMT2Q96KQ7 1210 aa31.1■■■□□ 2.57
CAPN1-226ENST00000533820 FAM9AQ8IZU1 332 aaPredicted RBP31.09■■■□□ 2.57
CAPN1-226ENST00000533820 SCRIBQ14160 1630 aa31.06■■■□□ 2.56
CAPN1-226ENST00000533820 TRIM26Q12899 539 aaPredicted RBP30.98■■■□□ 2.55
CAPN1-226ENST00000533820 TRIM41Q8WV44 630 aa30.98■■■□□ 2.55
CAPN1-226ENST00000533820 ABCC9O60706 1549 aa30.96■■■□□ 2.55
CAPN1-226ENST00000533820 RSF1Q96T23 1441 aaPredicted RBP30.94■■■□□ 2.54
CAPN1-226ENST00000533820 RB1CC1Q8TDY2 1594 aa30.7■■■□□ 2.51
CAPN1-226ENST00000533820 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
CAPN1-226ENST00000533820 MYT1Q01538 1121 aa30.34■■■□□ 2.45
CAPN1-226ENST00000533820 MROH2BQ7Z745 1585 aa30.32■■■□□ 2.44
CAPN1-226ENST00000533820 ZEB1P37275 1124 aaPredicted RBP30.27■■■□□ 2.44
CAPN1-226ENST00000533820 WIZO95785 1651 aa30.18■■■□□ 2.42
CAPN1-226ENST00000533820 SCAF1Q9H7N4 1312 aaKnown RBP30.15■■■□□ 2.42
CAPN1-226ENST00000533820 TTBK1Q5TCY1 1321 aaPredicted RBP30.12■■■□□ 2.41
CAPN1-226ENST00000533820 NACADO15069 1562 aa30.12■■■□□ 2.41
CAPN1-226ENST00000533820 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.01■■■□□ 2.39
CAPN1-226ENST00000533820 CCER1Q8TC90 406 aaPredicted RBP29.87■■■□□ 2.37
CAPN1-226ENST00000533820 BAZ1AQ9NRL2 1556 aaPredicted RBP29.76■■■□□ 2.35
CAPN1-226ENST00000533820 ABCC8Q09428 1581 aa29.76■■■□□ 2.35
CAPN1-226ENST00000533820 CCDC88BA6NC98 1476 aa29.68■■■□□ 2.34
CAPN1-226ENST00000533820 UBTFP17480 764 aaKnown RBP29.58■■■□□ 2.33
CAPN1-226ENST00000533820 EIF4G1Q04637 1599 aaKnown RBP29.57■■■□□ 2.32
CAPN1-226ENST00000533820 SOGA1O94964 1423 aa29.57■■■□□ 2.32
CAPN1-226ENST00000533820 PABPN1Q86U42 306 aaKnown RBP eCLIP29.54■■■□□ 2.323e-6■■■□□ 14.7
CAPN1-226ENST00000533820 TOP2AP11388 1531 aaKnown RBP29.49■■■□□ 2.31
CAPN1-226ENST00000533820 CEP162Q5TB80 1403 aa29.48■■■□□ 2.31
CAPN1-226ENST00000533820 SMARCA4P51532 1647 aa29.44■■■□□ 2.3
CAPN1-226ENST00000533820 RUSC2Q8N2Y8 1516 aa29.44■■■□□ 2.3
CAPN1-226ENST00000533820 SMARCA2P51531 1590 aa29.41■■■□□ 2.3
CAPN1-226ENST00000533820 CSRNP3Q8WYN3 585 aa29.41■■■□□ 2.3
CAPN1-226ENST00000533820 DIEXFQ68CQ4 756 aaKnown RBP29.36■■■□□ 2.29
CAPN1-226ENST00000533820 NEUROD1Q13562 356 aa29.31■■■□□ 2.28
CAPN1-226ENST00000533820 RANGAP1P46060 587 aaPredicted RBP29.29■■■□□ 2.28
CAPN1-226ENST00000533820 TNIKQ9UKE5 1360 aa29.27■■■□□ 2.28
CAPN1-226ENST00000533820 WRNQ14191 1432 aaPredicted RBP eCLIP29.25■■■□□ 2.27
CAPN1-226ENST00000533820 ACIN1Q9UKV3 1341 aaKnown RBP29.23■■■□□ 2.27
CAPN1-226ENST00000533820 UNC13AQ9UPW8 1703 aa29.22■■■□□ 2.27
CAPN1-226ENST00000533820 HNRNPUL2Q1KMD3 747 aaKnown RBP29.2■■■□□ 2.26
CAPN1-226ENST00000533820 GTF3C3Q9Y5Q9 886 aa29.07■■■□□ 2.24
CAPN1-226ENST00000533820 GOLGA3Q08378 1498 aa29.06■■■□□ 2.24
CAPN1-226ENST00000533820 EEA1Q15075 1411 aa29.05■■■□□ 2.24
CAPN1-226ENST00000533820 YTHDC1Q96MU7 727 aaKnown RBP29.02■■■□□ 2.24
CAPN1-226ENST00000533820 CENPBP07199 599 aaPredicted RBP29■■■□□ 2.23
CAPN1-226ENST00000533820 ZNF316A6NFI3 1004 aaPredicted RBP28.96■■■□□ 2.23
CAPN1-226ENST00000533820 APLP2Q06481 763 aa28.9■■■□□ 2.22
CAPN1-226ENST00000533820 BICRAQ9NZM4 1560 aa28.89■■■□□ 2.22
CAPN1-226ENST00000533820 SYNJ1O43426 1573 aa28.89■■■□□ 2.21
CAPN1-226ENST00000533820 CLIP1P30622 1438 aa28.89■■■□□ 2.21
CAPN1-226ENST00000533820 CEP164Q9UPV0 1460 aa28.83■■■□□ 2.21
CAPN1-226ENST00000533820 RAPGEF2Q9Y4G8 1499 aa28.76■■■□□ 2.19
CAPN1-226ENST00000533820 MIER1Q8N108 512 aa28.75■■■□□ 2.19
CAPN1-226ENST00000533820 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
CAPN1-226ENST00000533820 BCL11AQ9H165 835 aa28.71■■■□□ 2.19
CAPN1-226ENST00000533820 ATAD2BQ9ULI0 1458 aa28.71■■■□□ 2.19
CAPN1-226ENST00000533820 VPS8Q8N3P4 1428 aa28.67■■■□□ 2.18
CAPN1-226ENST00000533820 KIF21BO75037 1637 aa28.63■■■□□ 2.17
CAPN1-226ENST00000533820 PEG3Q9GZU2 1588 aa28.61■■■□□ 2.17
CAPN1-226ENST00000533820 KANK4Q5T7N3 995 aaPredicted RBP28.48■■■□□ 2.15
CAPN1-226ENST00000533820 ITGAEP38570 1179 aa28.44■■■□□ 2.14
CAPN1-226ENST00000533820 PRKCSHP14314 528 aaPredicted RBP28.38■■■□□ 2.13
CAPN1-226ENST00000533820 TOP2BQ02880 1626 aa28.34■■■□□ 2.13
CAPN1-226ENST00000533820 DHX57Q6P158 1386 aaKnown RBP28.27■■■□□ 2.12
CAPN1-226ENST00000533820 ARAP1Q96P48 1450 aa28.26■■■□□ 2.12
CAPN1-226ENST00000533820 PRXQ9BXM0 1461 aa28.22■■■□□ 2.11
CAPN1-226ENST00000533820 CUX1P39880 1505 aa28.16■■■□□ 2.1
CAPN1-226ENST00000533820 KIF27Q86VH2 1401 aa28.14■■■□□ 2.09
CAPN1-226ENST00000533820 BIVM-ERCC5R4GMW8 1640 aa28.13■■■□□ 2.09
CAPN1-226ENST00000533820 ERICH3Q5RHP9 1530 aa28.1■■■□□ 2.09
CAPN1-226ENST00000533820 ATP1B4Q9UN42 357 aaPredicted RBP28.05■■■□□ 2.08
CAPN1-226ENST00000533820 CLSPNQ9HAW4 1339 aa28.03■■■□□ 2.08
CAPN1-226ENST00000533820 CCNB3Q8WWL7 1395 aa28.02■■■□□ 2.08
CAPN1-226ENST00000533820 P3H3Q8IVL6 736 aa28.02■■■□□ 2.08
CAPN1-226ENST00000533820 ARHGAP35Q9NRY4 1499 aa28■■■□□ 2.07
CAPN1-226ENST00000533820 NCAPD3P42695 1498 aa27.98■■■□□ 2.07
CAPN1-226ENST00000533820 RRBP1Q9P2E9 1410 aaKnown RBP27.97■■■□□ 2.07
CAPN1-226ENST00000533820 FAM50AQ14320 339 aaKnown RBP27.93■■■□□ 2.06
CAPN1-226ENST00000533820 CUX2O14529 1486 aa27.92■■■□□ 2.06
CAPN1-226ENST00000533820 KCNH8Q96L42 1107 aa27.91■■■□□ 2.06
CAPN1-226ENST00000533820 ANP32EQ9BTT0 268 aa27.89■■■□□ 2.06
CAPN1-226ENST00000533820 CFTRP13569 1480 aa27.89■■■□□ 2.06
CAPN1-226ENST00000533820 RAB3GAP2Q9H2M9 1393 aa27.88■■■□□ 2.05
CAPN1-226ENST00000533820 HMGXB3Q12766 1538 aa27.87■■■□□ 2.05
CAPN1-226ENST00000533820 IGF1RP08069 1367 aa27.86■■■□□ 2.05
CAPN1-226ENST00000533820 SIN3AQ96ST3 1273 aa27.84■■■□□ 2.05
CAPN1-226ENST00000533820 SUPT16HQ9Y5B9 1047 aaKnown RBP27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms