RNA–Protein interactions for RNA: ENST00000527323.5

CAPN1-208, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-208ENST00000527323 NISCHQ9Y2I1 1504 aa25.86■■□□□ 1.73
CAPN1-208ENST00000527323 DCAF8L2P0C7V8 631 aa22.51■■□□□ 1.19
CAPN1-208ENST00000527323 SHROOM4Q9ULL8 1493 aa22.1■■□□□ 1.13
CAPN1-208ENST00000527323 CCDC180Q9P1Z9 1646 aa22.1■■□□□ 1.13
CAPN1-208ENST00000527323 ABCC9O60706 1549 aa21.87■■□□□ 1.09
CAPN1-208ENST00000527323 ZCCHC6Q5VYS8 1495 aaKnown RBP21.63■■□□□ 1.05
CAPN1-208ENST00000527323 SUPT5HO00267 1087 aaKnown RBP21.34■■□□□ 1.01
CAPN1-208ENST00000527323 SCRIBQ14160 1630 aa21.07■□□□□ 0.96
CAPN1-208ENST00000527323 PABPN1Q86U42 306 aaKnown RBP eCLIP20.93■□□□□ 0.943e-6■■■□□ 14.7
CAPN1-208ENST00000527323 DCAF1Q9Y4B6 1507 aa20.9■□□□□ 0.94
CAPN1-208ENST00000527323 NACADO15069 1562 aa20.75■□□□□ 0.91
CAPN1-208ENST00000527323 CHIC1Q5VXU3 224 aa20.75■□□□□ 0.91
CAPN1-208ENST00000527323 RB1CC1Q8TDY2 1594 aa20.69■□□□□ 0.9
CAPN1-208ENST00000527323 HRCP23327 699 aa20.69■□□□□ 0.9
CAPN1-208ENST00000527323 MYO15BQ96JP2 1530 aa20.62■□□□□ 0.89
CAPN1-208ENST00000527323 PCGF6Q9BYE7 350 aa20.59■□□□□ 0.89
CAPN1-208ENST00000527323 CECR2Q9BXF3 1484 aa20.49■□□□□ 0.87
CAPN1-208ENST00000527323 UNC13AQ9UPW8 1703 aa20.39■□□□□ 0.85
CAPN1-208ENST00000527323 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
CAPN1-208ENST00000527323 LOC105371045A0A1W2PR82 267 aa20.27■□□□□ 0.84
CAPN1-208ENST00000527323 RSF1Q96T23 1441 aaPredicted RBP20.26■□□□□ 0.83
CAPN1-208ENST00000527323 MROH2BQ7Z745 1585 aa20.22■□□□□ 0.83
CAPN1-208ENST00000527323 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
CAPN1-208ENST00000527323 WIZO95785 1651 aa20.07■□□□□ 0.8
CAPN1-208ENST00000527323 TRIM26Q12899 539 aaPredicted RBP20.01■□□□□ 0.79
CAPN1-208ENST00000527323 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
CAPN1-208ENST00000527323 BAZ1AQ9NRL2 1556 aaPredicted RBP19.88■□□□□ 0.77
CAPN1-208ENST00000527323 SMARCA4P51532 1647 aa19.85■□□□□ 0.77
CAPN1-208ENST00000527323 FAM9AQ8IZU1 332 aaPredicted RBP19.8■□□□□ 0.76
CAPN1-208ENST00000527323 TRIM41Q8WV44 630 aa19.79■□□□□ 0.76
CAPN1-208ENST00000527323 ZEB1P37275 1124 aaPredicted RBP19.72■□□□□ 0.75
CAPN1-208ENST00000527323 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
CAPN1-208ENST00000527323 EIF4G1Q04637 1599 aaKnown RBP19.65■□□□□ 0.74
CAPN1-208ENST00000527323 ATAD2BQ9ULI0 1458 aa19.64■□□□□ 0.73
CAPN1-208ENST00000527323 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
CAPN1-208ENST00000527323 BAZ1BQ9UIG0 1483 aaKnown RBP19.58■□□□□ 0.73
CAPN1-208ENST00000527323 TOP2AP11388 1531 aaKnown RBP19.53■□□□□ 0.72
CAPN1-208ENST00000527323 SMARCA2P51531 1590 aa19.47■□□□□ 0.71
CAPN1-208ENST00000527323 CC2D2AQ9P2K1 1620 aa19.44■□□□□ 0.7
CAPN1-208ENST00000527323 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
CAPN1-208ENST00000527323 SCAF1Q9H7N4 1312 aaKnown RBP19.3■□□□□ 0.68
CAPN1-208ENST00000527323 PEG3Q9GZU2 1588 aa19.29■□□□□ 0.68
CAPN1-208ENST00000527323 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
CAPN1-208ENST00000527323 PELP1Q8IZL8 1130 aaKnown RBP19.29■□□□□ 0.68
CAPN1-208ENST00000527323 SLC24A1O60721 1099 aa19.28■□□□□ 0.68
CAPN1-208ENST00000527323 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
CAPN1-208ENST00000527323 CCER1Q8TC90 406 aaPredicted RBP19.23■□□□□ 0.67
CAPN1-208ENST00000527323 NESP48681 1621 aa19.19■□□□□ 0.66
CAPN1-208ENST00000527323 RANGAP1P46060 587 aaPredicted RBP19.19■□□□□ 0.66
CAPN1-208ENST00000527323 TTBK1Q5TCY1 1321 aaPredicted RBP19.12■□□□□ 0.65
CAPN1-208ENST00000527323 HMGXB3Q12766 1538 aa19.1■□□□□ 0.65
CAPN1-208ENST00000527323 SOGA1O94964 1423 aa19.1■□□□□ 0.65
CAPN1-208ENST00000527323 RUSC2Q8N2Y8 1516 aa19.1■□□□□ 0.65
CAPN1-208ENST00000527323 WRNQ14191 1432 aaPredicted RBP eCLIP19.07■□□□□ 0.64
CAPN1-208ENST00000527323 ACIN1Q9UKV3 1341 aaKnown RBP19.02■□□□□ 0.63
CAPN1-208ENST00000527323 CADPSQ9ULU8 1353 aa19.01■□□□□ 0.63
CAPN1-208ENST00000527323 DIEXFQ68CQ4 756 aaKnown RBP18.99■□□□□ 0.63
CAPN1-208ENST00000527323 SYNJ1O43426 1573 aa18.99■□□□□ 0.63
CAPN1-208ENST00000527323 NEUROD1Q13562 356 aa18.98■□□□□ 0.63
CAPN1-208ENST00000527323 UBTFP17480 764 aaKnown RBP18.94■□□□□ 0.62
CAPN1-208ENST00000527323 CFTRP13569 1480 aa18.94■□□□□ 0.62
CAPN1-208ENST00000527323 CENPBP07199 599 aaPredicted RBP18.92■□□□□ 0.62
CAPN1-208ENST00000527323 CSRNP3Q8WYN3 585 aa18.87■□□□□ 0.61
CAPN1-208ENST00000527323 GTF3C3Q9Y5Q9 886 aa18.87■□□□□ 0.61
CAPN1-208ENST00000527323 FANCD2Q9BXW9 1451 aa18.85■□□□□ 0.61
CAPN1-208ENST00000527323 CUX1P39880 1505 aa18.83■□□□□ 0.61
CAPN1-208ENST00000527323 CEP162Q5TB80 1403 aa18.81■□□□□ 0.6
CAPN1-208ENST00000527323 RAD54L2Q9Y4B4 1467 aa18.75■□□□□ 0.59
CAPN1-208ENST00000527323 TNIKQ9UKE5 1360 aa18.74■□□□□ 0.59
CAPN1-208ENST00000527323 ZNF316A6NFI3 1004 aaPredicted RBP18.73■□□□□ 0.59
CAPN1-208ENST00000527323 YTHDC1Q96MU7 727 aaKnown RBP18.68■□□□□ 0.58
CAPN1-208ENST00000527323 FGD5Q6ZNL6 1462 aa18.68■□□□□ 0.58
CAPN1-208ENST00000527323 TDRD9Q8NDG6 1382 aaKnown RBP18.67■□□□□ 0.58
CAPN1-208ENST00000527323 TOP2BQ02880 1626 aa18.66■□□□□ 0.58
CAPN1-208ENST00000527323 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
CAPN1-208ENST00000527323 HNRNPUL2Q1KMD3 747 aaKnown RBP18.66■□□□□ 0.58
CAPN1-208ENST00000527323 CUX2O14529 1486 aa18.66■□□□□ 0.58
CAPN1-208ENST00000527323 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
CAPN1-208ENST00000527323 PDS5BQ9NTI5 1447 aa18.62■□□□□ 0.57
CAPN1-208ENST00000527323 ERCC6Q03468 1493 aa18.62■□□□□ 0.57
CAPN1-208ENST00000527323 URB2Q14146 1524 aaKnown RBP18.62■□□□□ 0.57
CAPN1-208ENST00000527323 EEA1Q15075 1411 aa18.62■□□□□ 0.57
CAPN1-208ENST00000527323 RAPGEF2Q9Y4G8 1499 aa18.6■□□□□ 0.57
CAPN1-208ENST00000527323 P3H3Q8IVL6 736 aa18.59■□□□□ 0.57
CAPN1-208ENST00000527323 TOPBP1Q92547 1522 aa18.58■□□□□ 0.57
CAPN1-208ENST00000527323 LAMC3Q9Y6N6 1575 aa18.56■□□□□ 0.56
CAPN1-208ENST00000527323 GOLGA3Q08378 1498 aa18.56■□□□□ 0.56
CAPN1-208ENST00000527323 POLA1P09884 1462 aaPredicted RBP18.55■□□□□ 0.56
CAPN1-208ENST00000527323 APLP2Q06481 763 aa18.54■□□□□ 0.56
CAPN1-208ENST00000527323 MIER1Q8N108 512 aa18.53■□□□□ 0.56
CAPN1-208ENST00000527323 BIVM-ERCC5R4GMW8 1640 aa18.53■□□□□ 0.56
CAPN1-208ENST00000527323 KIF27Q86VH2 1401 aa18.52■□□□□ 0.56
CAPN1-208ENST00000527323 FBLN2P98095 1184 aa18.51■□□□□ 0.55
CAPN1-208ENST00000527323 PRDM2Q13029 1718 aa18.48■□□□□ 0.55
CAPN1-208ENST00000527323 AQRO60306 1485 aaKnown RBP eCLIP18.48■□□□□ 0.558e-7■■■■□ 24.7
CAPN1-208ENST00000527323 IGF1RP08069 1367 aa18.47■□□□□ 0.55
CAPN1-208ENST00000527323 ATP1B4Q9UN42 357 aaPredicted RBP18.46■□□□□ 0.55
CAPN1-208ENST00000527323 DNMBPQ6XZF7 1577 aa18.44■□□□□ 0.54
CAPN1-208ENST00000527323 CLIP1P30622 1438 aa18.43■□□□□ 0.54
CAPN1-208ENST00000527323 CARMIL1Q5VZK9 1371 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms