RNA–Protein interactions for RNA: ENST00000447345.5

RFC4-208, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 785 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-208ENST00000447345 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
RFC4-208ENST00000447345 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
RFC4-208ENST00000447345 ABCC9O60706 1549 aa25.13■■□□□ 1.61
RFC4-208ENST00000447345 RB1CC1Q8TDY2 1594 aa24.19■■□□□ 1.46
RFC4-208ENST00000447345 DCAF8L2P0C7V8 631 aa24.14■■□□□ 1.45
RFC4-208ENST00000447345 NACADO15069 1562 aa24.13■■□□□ 1.45
RFC4-208ENST00000447345 ZCCHC6Q5VYS8 1495 aaKnown RBP24.12■■□□□ 1.45
RFC4-208ENST00000447345 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
RFC4-208ENST00000447345 DCAF1Q9Y4B6 1507 aa23.88■■□□□ 1.41
RFC4-208ENST00000447345 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
RFC4-208ENST00000447345 SCRIBQ14160 1630 aa23.57■■□□□ 1.36
RFC4-208ENST00000447345 BICRAQ9NZM4 1560 aa23.47■■□□□ 1.35
RFC4-208ENST00000447345 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
RFC4-208ENST00000447345 SHROOM4Q9ULL8 1493 aa23.12■■□□□ 1.29
RFC4-208ENST00000447345 DNAJC5BQ9UF47 199 aa22.91■■□□□ 1.26
RFC4-208ENST00000447345 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
RFC4-208ENST00000447345 CC2D2AQ9P2K1 1620 aa22.76■■□□□ 1.23
RFC4-208ENST00000447345 CECR2Q9BXF3 1484 aa22.54■■□□□ 1.2
RFC4-208ENST00000447345 SMARCA4P51532 1647 aa22.5■■□□□ 1.19
RFC4-208ENST00000447345 BAZ1AQ9NRL2 1556 aaPredicted RBP22.43■■□□□ 1.18
RFC4-208ENST00000447345 MROH2BQ7Z745 1585 aa22.32■■□□□ 1.16
RFC4-208ENST00000447345 SMARCA2P51531 1590 aa22.28■■□□□ 1.16
RFC4-208ENST00000447345 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
RFC4-208ENST00000447345 NCAPD3P42695 1498 aa22.21■■□□□ 1.15
RFC4-208ENST00000447345 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
RFC4-208ENST00000447345 HMGXB3Q12766 1538 aa22.18■■□□□ 1.14
RFC4-208ENST00000447345 WIZO95785 1651 aa22.17■■□□□ 1.14
RFC4-208ENST00000447345 BAZ1BQ9UIG0 1483 aaKnown RBP22.14■■□□□ 1.13
RFC4-208ENST00000447345 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
RFC4-208ENST00000447345 TOP2AP11388 1531 aaKnown RBP21.86■■□□□ 1.09
RFC4-208ENST00000447345 NESP48681 1621 aa21.77■■□□□ 1.08
RFC4-208ENST00000447345 LAMC3Q9Y6N6 1575 aa21.7■■□□□ 1.06
RFC4-208ENST00000447345 ERCC6Q03468 1493 aa21.65■■□□□ 1.06
RFC4-208ENST00000447345 KIF21AQ7Z4S6 1674 aa21.63■■□□□ 1.05
RFC4-208ENST00000447345 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
RFC4-208ENST00000447345 CADPSQ9ULU8 1353 aa21.56■■□□□ 1.04
RFC4-208ENST00000447345 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
RFC4-208ENST00000447345 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
RFC4-208ENST00000447345 PDS5BQ9NTI5 1447 aa21.48■■□□□ 1.03
RFC4-208ENST00000447345 CFTRP13569 1480 aa21.47■■□□□ 1.03
RFC4-208ENST00000447345 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
RFC4-208ENST00000447345 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.02
RFC4-208ENST00000447345 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
RFC4-208ENST00000447345 CUX2O14529 1486 aa21.34■■□□□ 1.01
RFC4-208ENST00000447345 MRC2Q9UBG0 1479 aa21.32■■□□□ 1
RFC4-208ENST00000447345 WDR62O43379 1518 aa21.27■■□□□ 1
RFC4-208ENST00000447345 URB2Q14146 1524 aaKnown RBP21.19■□□□□ 0.98
RFC4-208ENST00000447345 DNMBPQ6XZF7 1577 aa21.07■□□□□ 0.96
RFC4-208ENST00000447345 TOPBP1Q92547 1522 aa21.07■□□□□ 0.96
RFC4-208ENST00000447345 ABCC8Q09428 1581 aa21■□□□□ 0.95
RFC4-208ENST00000447345 CUX1P39880 1505 aa20.94■□□□□ 0.94
RFC4-208ENST00000447345 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
RFC4-208ENST00000447345 IFT140Q96RY7 1462 aa20.88■□□□□ 0.93
RFC4-208ENST00000447345 FGD5Q6ZNL6 1462 aa20.87■□□□□ 0.93
RFC4-208ENST00000447345 TARBP1Q13395 1621 aaKnown RBP20.86■□□□□ 0.93
RFC4-208ENST00000447345 BIVM-ERCC5R4GMW8 1640 aa20.83■□□□□ 0.93
RFC4-208ENST00000447345 SYNJ1O43426 1573 aa20.83■□□□□ 0.92
RFC4-208ENST00000447345 EIF4G3O43432 1585 aaKnown RBP20.83■□□□□ 0.92
RFC4-208ENST00000447345 ZNF608Q9ULD9 1512 aaPredicted RBP20.83■□□□□ 0.92
RFC4-208ENST00000447345 RAD54L2Q9Y4B4 1467 aa20.81■□□□□ 0.92
RFC4-208ENST00000447345 WRNQ14191 1432 aaPredicted RBP eCLIP20.79■□□□□ 0.92
RFC4-208ENST00000447345 TOP2BQ02880 1626 aa20.79■□□□□ 0.92
RFC4-208ENST00000447345 WDR97A6NE52 1622 aa20.78■□□□□ 0.92
RFC4-208ENST00000447345 SOGA1O94964 1423 aa20.76■□□□□ 0.91
RFC4-208ENST00000447345 AQRO60306 1485 aaKnown RBP eCLIP20.69■□□□□ 0.92e-7■■■■□ 23.4
RFC4-208ENST00000447345 PBRM1Q86U86 1689 aa20.67■□□□□ 0.9
RFC4-208ENST00000447345 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
RFC4-208ENST00000447345 ABCA5Q8WWZ7 1642 aa20.62■□□□□ 0.89
RFC4-208ENST00000447345 ABCA10Q8WWZ4 1543 aa20.62■□□□□ 0.89
RFC4-208ENST00000447345 CHD1O14646 1710 aa20.61■□□□□ 0.89
RFC4-208ENST00000447345 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
RFC4-208ENST00000447345 DNAJC5Q9H3Z4 198 aa20.54■□□□□ 0.88
RFC4-208ENST00000447345 SNAPC4Q5SXM2 1469 aa20.54■□□□□ 0.88
RFC4-208ENST00000447345 GRIN2BQ13224 1484 aa20.52■□□□□ 0.88
RFC4-208ENST00000447345 MAGI1Q96QZ7 1491 aaPredicted RBP20.47■□□□□ 0.87
RFC4-208ENST00000447345 FBLN2P98095 1184 aa20.43■□□□□ 0.86
RFC4-208ENST00000447345 ADAMTS12P58397 1594 aa20.42■□□□□ 0.86
RFC4-208ENST00000447345 OSCARQ8IYS5 282 aa20.4■□□□□ 0.86
RFC4-208ENST00000447345 SYNJ2O15056 1496 aa20.39■□□□□ 0.85
RFC4-208ENST00000447345 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
RFC4-208ENST00000447345 KIF27Q86VH2 1401 aa20.34■□□□□ 0.85
RFC4-208ENST00000447345 CHMP7Q8WUX9 453 aaPredicted RBP20.33■□□□□ 0.85
RFC4-208ENST00000447345 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
RFC4-208ENST00000447345 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
RFC4-208ENST00000447345 CUL7Q14999 1698 aa20.29■□□□□ 0.84
RFC4-208ENST00000447345 FHAD1B1AJZ9 1412 aa20.28■□□□□ 0.84
RFC4-208ENST00000447345 CLASP1Q7Z460 1538 aa20.27■□□□□ 0.83
RFC4-208ENST00000447345 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
RFC4-208ENST00000447345 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
RFC4-208ENST00000447345 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
RFC4-208ENST00000447345 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
RFC4-208ENST00000447345 RUSC2Q8N2Y8 1516 aa20.23■□□□□ 0.83
RFC4-208ENST00000447345 ARHGEF11O15085 1522 aa20.19■□□□□ 0.82
RFC4-208ENST00000447345 IGF1RP08069 1367 aa20.19■□□□□ 0.82
RFC4-208ENST00000447345 NUP160Q12769 1436 aa20.16■□□□□ 0.82
RFC4-208ENST00000447345 CARMIL1Q5VZK9 1371 aa20.1■□□□□ 0.81
RFC4-208ENST00000447345 CHIC1Q5VXU3 224 aa20.08■□□□□ 0.81
RFC4-208ENST00000447345 SHROOM2Q13796 1616 aa20.08■□□□□ 0.8
RFC4-208ENST00000447345 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
RFC4-208ENST00000447345 ARAP1Q96P48 1450 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 148.5 ms