RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 NISCHQ9Y2I1 1504 aa38.77■■■■□ 3.8
CAPN1-201ENST00000279247 CCDC180Q9P1Z9 1646 aa33.41■■■□□ 2.94
CAPN1-201ENST00000279247 SHROOM4Q9ULL8 1493 aa32.89■■■□□ 2.86
CAPN1-201ENST00000279247 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
CAPN1-201ENST00000279247 ZCCHC6Q5VYS8 1495 aaKnown RBP32.59■■■□□ 2.81
CAPN1-201ENST00000279247 ABCC9O60706 1549 aa32.36■■■□□ 2.77
CAPN1-201ENST00000279247 SUPT5HO00267 1087 aaKnown RBP31.93■■■□□ 2.7
CAPN1-201ENST00000279247 DCAF1Q9Y4B6 1507 aa31.67■■■□□ 2.66
CAPN1-201ENST00000279247 SCRIBQ14160 1630 aa31.33■■■□□ 2.61
CAPN1-201ENST00000279247 NACADO15069 1562 aa31.26■■■□□ 2.59
CAPN1-201ENST00000279247 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
CAPN1-201ENST00000279247 RB1CC1Q8TDY2 1594 aa31.08■■■□□ 2.57
CAPN1-201ENST00000279247 PABPN1Q86U42 306 aaKnown RBP eCLIP30.78■■■□□ 2.523e-6■■■□□ 14.7
CAPN1-201ENST00000279247 UNC13AQ9UPW8 1703 aa30.54■■■□□ 2.48
CAPN1-201ENST00000279247 CHIC1Q5VXU3 224 aa30.47■■■□□ 2.47
CAPN1-201ENST00000279247 CECR2Q9BXF3 1484 aa30.45■■■□□ 2.47
CAPN1-201ENST00000279247 RSF1Q96T23 1441 aaPredicted RBP30.44■■■□□ 2.46
CAPN1-201ENST00000279247 BICRAQ9NZM4 1560 aa30.29■■■□□ 2.44
CAPN1-201ENST00000279247 MROH2BQ7Z745 1585 aa30.16■■■□□ 2.42
CAPN1-201ENST00000279247 WIZO95785 1651 aa29.97■■■□□ 2.39
CAPN1-201ENST00000279247 BAZ1AQ9NRL2 1556 aaPredicted RBP29.85■■■□□ 2.37
CAPN1-201ENST00000279247 SMARCA4P51532 1647 aa29.77■■■□□ 2.36
CAPN1-201ENST00000279247 TRIM41Q8WV44 630 aa29.69■■■□□ 2.34
CAPN1-201ENST00000279247 LOC105371045A0A1W2PR82 267 aa29.69■■■□□ 2.34
CAPN1-201ENST00000279247 FAM9AQ8IZU1 332 aaPredicted RBP29.6■■■□□ 2.33
CAPN1-201ENST00000279247 EHMT2Q96KQ7 1210 aa29.51■■■□□ 2.31
CAPN1-201ENST00000279247 TOP2AP11388 1531 aaKnown RBP29.4■■■□□ 2.3
CAPN1-201ENST00000279247 EIF4G1Q04637 1599 aaKnown RBP29.39■■■□□ 2.3
CAPN1-201ENST00000279247 ATAD2BQ9ULI0 1458 aa29.38■■■□□ 2.29
CAPN1-201ENST00000279247 CCDC88BA6NC98 1476 aa29.34■■■□□ 2.29
CAPN1-201ENST00000279247 SMARCA2P51531 1590 aa29.24■■■□□ 2.27
CAPN1-201ENST00000279247 BAZ1BQ9UIG0 1483 aaKnown RBP29.23■■■□□ 2.27
CAPN1-201ENST00000279247 PEG3Q9GZU2 1588 aa29.17■■■□□ 2.26
CAPN1-201ENST00000279247 ABCC8Q09428 1581 aa29.11■■■□□ 2.25
CAPN1-201ENST00000279247 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
CAPN1-201ENST00000279247 NCAPD3P42695 1498 aa28.98■■■□□ 2.23
CAPN1-201ENST00000279247 PCGF6Q9BYE7 350 aa28.94■■■□□ 2.22
CAPN1-201ENST00000279247 DNAJC5BQ9UF47 199 aa28.93■■■□□ 2.22
CAPN1-201ENST00000279247 HMGXB3Q12766 1538 aa28.8■■■□□ 2.2
CAPN1-201ENST00000279247 SOGA1O94964 1423 aa28.69■■■□□ 2.18
CAPN1-201ENST00000279247 WRNQ14191 1432 aaPredicted RBP eCLIP28.67■■■□□ 2.18
CAPN1-201ENST00000279247 RUSC2Q8N2Y8 1516 aa28.59■■■□□ 2.17
CAPN1-201ENST00000279247 PPARGC1BQ86YN6 1023 aaKnown RBP28.56■■■□□ 2.16
CAPN1-201ENST00000279247 SYNJ1O43426 1573 aa28.5■■■□□ 2.15
CAPN1-201ENST00000279247 CSRNP3Q8WYN3 585 aa28.48■■■□□ 2.15
CAPN1-201ENST00000279247 UBTFP17480 764 aaKnown RBP28.47■■■□□ 2.15
CAPN1-201ENST00000279247 NESP48681 1621 aa28.43■■■□□ 2.14
CAPN1-201ENST00000279247 CFTRP13569 1480 aa28.41■■■□□ 2.14
CAPN1-201ENST00000279247 CADPSQ9ULU8 1353 aa28.4■■■□□ 2.14
CAPN1-201ENST00000279247 TRIM26Q12899 539 aaPredicted RBP28.39■■■□□ 2.14
CAPN1-201ENST00000279247 TTBK1Q5TCY1 1321 aaPredicted RBP28.33■■■□□ 2.13
CAPN1-201ENST00000279247 RANGAP1P46060 587 aaPredicted RBP28.29■■■□□ 2.12
CAPN1-201ENST00000279247 EEA1Q15075 1411 aa28.24■■■□□ 2.11
CAPN1-201ENST00000279247 HRCP23327 699 aa28.22■■■□□ 2.11
CAPN1-201ENST00000279247 CEP162Q5TB80 1403 aa28.18■■■□□ 2.1
CAPN1-201ENST00000279247 TOP2BQ02880 1626 aa28.14■■■□□ 2.1
CAPN1-201ENST00000279247 CUX1P39880 1505 aa28.13■■■□□ 2.09
CAPN1-201ENST00000279247 FANCD2Q9BXW9 1451 aa28.12■■■□□ 2.09
CAPN1-201ENST00000279247 GOLGA3Q08378 1498 aa28.11■■■□□ 2.09
CAPN1-201ENST00000279247 TNIKQ9UKE5 1360 aa28.11■■■□□ 2.09
CAPN1-201ENST00000279247 CEP164Q9UPV0 1460 aa28.02■■■□□ 2.08
CAPN1-201ENST00000279247 BIVM-ERCC5R4GMW8 1640 aa28■■■□□ 2.07
CAPN1-201ENST00000279247 RAPGEF2Q9Y4G8 1499 aa28■■■□□ 2.07
CAPN1-201ENST00000279247 PRDM2Q13029 1718 aa27.94■■■□□ 2.06
CAPN1-201ENST00000279247 LAMC3Q9Y6N6 1575 aa27.91■■■□□ 2.06
CAPN1-201ENST00000279247 KIF21BO75037 1637 aa27.87■■■□□ 2.05
CAPN1-201ENST00000279247 PDS5BQ9NTI5 1447 aa27.86■■■□□ 2.05
CAPN1-201ENST00000279247 FGD5Q6ZNL6 1462 aa27.85■■■□□ 2.05
CAPN1-201ENST00000279247 KIF27Q86VH2 1401 aa27.85■■■□□ 2.05
CAPN1-201ENST00000279247 CLIP1P30622 1438 aa27.84■■■□□ 2.05
CAPN1-201ENST00000279247 RAD54L2Q9Y4B4 1467 aa27.81■■■□□ 2.04
CAPN1-201ENST00000279247 KIF21AQ7Z4S6 1674 aa27.8■■■□□ 2.04
CAPN1-201ENST00000279247 CUX2O14529 1486 aa27.8■■■□□ 2.04
CAPN1-201ENST00000279247 URB2Q14146 1524 aaKnown RBP27.79■■■□□ 2.04
CAPN1-201ENST00000279247 TOPBP1Q92547 1522 aa27.78■■■□□ 2.04
CAPN1-201ENST00000279247 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
CAPN1-201ENST00000279247 PRXQ9BXM0 1461 aa27.69■■■□□ 2.02
CAPN1-201ENST00000279247 DNMBPQ6XZF7 1577 aa27.68■■■□□ 2.02
CAPN1-201ENST00000279247 APLP2Q06481 763 aa27.65■■■□□ 2.02
CAPN1-201ENST00000279247 ERCC6Q03468 1493 aa27.63■■■□□ 2.01
CAPN1-201ENST00000279247 TDRD9Q8NDG6 1382 aaKnown RBP27.61■■■□□ 2.01
CAPN1-201ENST00000279247 IGF1RP08069 1367 aa27.6■■■□□ 2.01
CAPN1-201ENST00000279247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.59■■■□□ 2.01
CAPN1-201ENST00000279247 ERICH3Q5RHP9 1530 aa27.56■■■□□ 2
CAPN1-201ENST00000279247 VPS8Q8N3P4 1428 aa27.54■■■□□ 2
CAPN1-201ENST00000279247 CARMIL1Q5VZK9 1371 aa27.52■■■□□ 2
CAPN1-201ENST00000279247 MRC2Q9UBG0 1479 aa27.48■■□□□ 1.99
CAPN1-201ENST00000279247 CCER1Q8TC90 406 aaPredicted RBP27.45■■□□□ 1.98
CAPN1-201ENST00000279247 P3H3Q8IVL6 736 aa27.43■■□□□ 1.98
CAPN1-201ENST00000279247 HNRNPUL2Q1KMD3 747 aaKnown RBP27.42■■□□□ 1.98
CAPN1-201ENST00000279247 ABCA10Q8WWZ4 1543 aa27.42■■□□□ 1.98
CAPN1-201ENST00000279247 ARAP1Q96P48 1450 aa27.39■■□□□ 1.97
CAPN1-201ENST00000279247 AQRO60306 1485 aaKnown RBP eCLIP27.38■■□□□ 1.978e-7■■■■□ 24.7
CAPN1-201ENST00000279247 ZEB1P37275 1124 aaPredicted RBP27.35■■□□□ 1.97
CAPN1-201ENST00000279247 ATP1B4Q9UN42 357 aaPredicted RBP27.32■■□□□ 1.96
CAPN1-201ENST00000279247 KANK4Q5T7N3 995 aaPredicted RBP27.31■■□□□ 1.96
CAPN1-201ENST00000279247 ZNF608Q9ULD9 1512 aaPredicted RBP27.31■■□□□ 1.96
CAPN1-201ENST00000279247 ARHGAP35Q9NRY4 1499 aa27.3■■□□□ 1.96
CAPN1-201ENST00000279247 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
CAPN1-201ENST00000279247 TARBP1Q13395 1621 aaKnown RBP27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms