RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 NISCHQ9Y2I1 1504 aa42.02■■■■■ 4.32
YBX3-201ENST00000228251 CCDC180Q9P1Z9 1646 aa36.33■■■■□ 3.41
YBX3-201ENST00000228251 ZCCHC6Q5VYS8 1495 aaKnown RBP35.48■■■■□ 3.27
YBX3-201ENST00000228251 DCAF1Q9Y4B6 1507 aa34.76■■■■□ 3.16
YBX3-201ENST00000228251 SHROOM4Q9ULL8 1493 aa34.7■■■■□ 3.14
YBX3-201ENST00000228251 DCAF8L2P0C7V8 631 aa34.23■■■■□ 3.07
YBX3-201ENST00000228251 MYO15BQ96JP2 1530 aa34.06■■■■□ 3.04
YBX3-201ENST00000228251 SUPT5HO00267 1087 aaKnown RBP33.67■■■□□ 2.98
YBX3-201ENST00000228251 ABCC9O60706 1549 aa33.63■■■□□ 2.97
YBX3-201ENST00000228251 NACADO15069 1562 aa33.6■■■□□ 2.97
YBX3-201ENST00000228251 SCRIBQ14160 1630 aa33.48■■■□□ 2.95
YBX3-201ENST00000228251 RB1CC1Q8TDY2 1594 aa33.12■■■□□ 2.89
YBX3-201ENST00000228251 RSF1Q96T23 1441 aaPredicted RBP32.87■■■□□ 2.85
YBX3-201ENST00000228251 CHIC1Q5VXU3 224 aa32.72■■■□□ 2.83
YBX3-201ENST00000228251 UNC13AQ9UPW8 1703 aa32.7■■■□□ 2.83
YBX3-201ENST00000228251 CECR2Q9BXF3 1484 aa32.63■■■□□ 2.81
YBX3-201ENST00000228251 MROH2BQ7Z745 1585 aa32.53■■■□□ 2.8
YBX3-201ENST00000228251 BAZ1AQ9NRL2 1556 aaPredicted RBP32.35■■■□□ 2.77
YBX3-201ENST00000228251 WIZO95785 1651 aa32.32■■■□□ 2.76
YBX3-201ENST00000228251 BICRAQ9NZM4 1560 aa32.27■■■□□ 2.76
YBX3-201ENST00000228251 SMARCA4P51532 1647 aa32.18■■■□□ 2.74
YBX3-201ENST00000228251 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.71
YBX3-201ENST00000228251 EIF4G1Q04637 1599 aaKnown RBP31.87■■■□□ 2.69
YBX3-201ENST00000228251 PABPN1Q86U42 306 aaKnown RBP eCLIP31.81■■■□□ 2.683e-7■■□□□ 12.6
YBX3-201ENST00000228251 PEG3Q9GZU2 1588 aa31.78■■■□□ 2.68
YBX3-201ENST00000228251 SMARCA2P51531 1590 aa31.72■■■□□ 2.67
YBX3-201ENST00000228251 CCDC88BA6NC98 1476 aa31.64■■■□□ 2.65
YBX3-201ENST00000228251 TRIM41Q8WV44 630 aa31.58■■■□□ 2.65
YBX3-201ENST00000228251 LOC105371045A0A1W2PR82 267 aa31.48■■■□□ 2.63
YBX3-201ENST00000228251 ATAD2BQ9ULI0 1458 aa31.42■■■□□ 2.62
YBX3-201ENST00000228251 BAZ1BQ9UIG0 1483 aaKnown RBP31.23■■■□□ 2.59
YBX3-201ENST00000228251 ABCC8Q09428 1581 aa31.23■■■□□ 2.59
YBX3-201ENST00000228251 HMGXB3Q12766 1538 aa31.07■■■□□ 2.56
YBX3-201ENST00000228251 FAM9AQ8IZU1 332 aaPredicted RBP31.05■■■□□ 2.56
YBX3-201ENST00000228251 NCAPD3P42695 1498 aa31.02■■■□□ 2.56
YBX3-201ENST00000228251 WRNQ14191 1432 aaPredicted RBP eCLIP30.86■■■□□ 2.53
YBX3-201ENST00000228251 SYNJ1O43426 1573 aa30.82■■■□□ 2.53
YBX3-201ENST00000228251 SOGA1O94964 1423 aa30.77■■■□□ 2.52
YBX3-201ENST00000228251 EEA1Q15075 1411 aa30.77■■■□□ 2.52
YBX3-201ENST00000228251 PCGF6Q9BYE7 350 aa30.74■■■□□ 2.51
YBX3-201ENST00000228251 RUSC2Q8N2Y8 1516 aa30.66■■■□□ 2.5
YBX3-201ENST00000228251 TOP2BQ02880 1626 aa30.61■■■□□ 2.49
YBX3-201ENST00000228251 BIVM-ERCC5R4GMW8 1640 aa30.6■■■□□ 2.49
YBX3-201ENST00000228251 EHMT2Q96KQ7 1210 aa30.56■■■□□ 2.48
YBX3-201ENST00000228251 TRIM26Q12899 539 aaPredicted RBP30.55■■■□□ 2.48
YBX3-201ENST00000228251 CFTRP13569 1480 aa30.54■■■□□ 2.48
YBX3-201ENST00000228251 PRDM2Q13029 1718 aa30.53■■■□□ 2.48
YBX3-201ENST00000228251 CC2D2AQ9P2K1 1620 aa30.51■■■□□ 2.47
YBX3-201ENST00000228251 HRCP23327 699 aa30.51■■■□□ 2.47
YBX3-201ENST00000228251 CSRNP3Q8WYN3 585 aa30.51■■■□□ 2.47
YBX3-201ENST00000228251 TNIKQ9UKE5 1360 aa30.45■■■□□ 2.47
YBX3-201ENST00000228251 KIF21BO75037 1637 aa30.44■■■□□ 2.46
YBX3-201ENST00000228251 GOLGA3Q08378 1498 aa30.4■■■□□ 2.46
YBX3-201ENST00000228251 CUX1P39880 1505 aa30.36■■■□□ 2.45
YBX3-201ENST00000228251 CEP162Q5TB80 1403 aa30.36■■■□□ 2.45
YBX3-201ENST00000228251 CEP164Q9UPV0 1460 aa30.33■■■□□ 2.45
YBX3-201ENST00000228251 CADPSQ9ULU8 1353 aa30.23■■■□□ 2.43
YBX3-201ENST00000228251 RAPGEF2Q9Y4G8 1499 aa30.11■■■□□ 2.41
YBX3-201ENST00000228251 UBTFP17480 764 aaKnown RBP30.1■■■□□ 2.41
YBX3-201ENST00000228251 ERICH3Q5RHP9 1530 aa30.08■■■□□ 2.41
YBX3-201ENST00000228251 PRXQ9BXM0 1461 aa30.06■■■□□ 2.4
YBX3-201ENST00000228251 KIF27Q86VH2 1401 aa29.98■■■□□ 2.39
YBX3-201ENST00000228251 CLIP1P30622 1438 aa29.92■■■□□ 2.38
YBX3-201ENST00000228251 FANCD2Q9BXW9 1451 aa29.92■■■□□ 2.38
YBX3-201ENST00000228251 PPARGC1BQ86YN6 1023 aaKnown RBP29.89■■■□□ 2.38
YBX3-201ENST00000228251 FGD5Q6ZNL6 1462 aa29.87■■■□□ 2.37
YBX3-201ENST00000228251 LAMC3Q9Y6N6 1575 aa29.84■■■□□ 2.37
YBX3-201ENST00000228251 DNMBPQ6XZF7 1577 aa29.82■■■□□ 2.36
YBX3-201ENST00000228251 NESP48681 1621 aa29.81■■■□□ 2.36
YBX3-201ENST00000228251 VPS8Q8N3P4 1428 aa29.8■■■□□ 2.36
YBX3-201ENST00000228251 CUX2O14529 1486 aa29.77■■■□□ 2.36
YBX3-201ENST00000228251 TOPBP1Q92547 1522 aa29.72■■■□□ 2.35
YBX3-201ENST00000228251 IGF1RP08069 1367 aa29.7■■■□□ 2.35
YBX3-201ENST00000228251 ARAP1Q96P48 1450 aa29.65■■■□□ 2.34
YBX3-201ENST00000228251 ZEB1P37275 1124 aaPredicted RBP29.64■■■□□ 2.34
YBX3-201ENST00000228251 POLA1P09884 1462 aaPredicted RBP29.64■■■□□ 2.33
YBX3-201ENST00000228251 ABCA10Q8WWZ4 1543 aa29.63■■■□□ 2.33
YBX3-201ENST00000228251 WDR97A6NE52 1622 aa29.58■■■□□ 2.33
YBX3-201ENST00000228251 URB2Q14146 1524 aaKnown RBP29.58■■■□□ 2.33
YBX3-201ENST00000228251 DNAJC5BQ9UF47 199 aa29.57■■■□□ 2.32
YBX3-201ENST00000228251 RAD54L2Q9Y4B4 1467 aa29.54■■■□□ 2.32
YBX3-201ENST00000228251 CARMIL1Q5VZK9 1371 aa29.51■■■□□ 2.32
YBX3-201ENST00000228251 KIF21AQ7Z4S6 1674 aa29.51■■■□□ 2.31
YBX3-201ENST00000228251 PDS5BQ9NTI5 1447 aa29.49■■■□□ 2.31
YBX3-201ENST00000228251 ARHGAP35Q9NRY4 1499 aa29.49■■■□□ 2.31
YBX3-201ENST00000228251 TTBK1Q5TCY1 1321 aaPredicted RBP29.45■■■□□ 2.31
YBX3-201ENST00000228251 CUL7Q14999 1698 aa29.43■■■□□ 2.3
YBX3-201ENST00000228251 ABCA5Q8WWZ7 1642 aa29.4■■■□□ 2.3
YBX3-201ENST00000228251 RANGAP1P46060 587 aaPredicted RBP29.39■■■□□ 2.29
YBX3-201ENST00000228251 TARBP1Q13395 1621 aaKnown RBP29.29■■■□□ 2.28
YBX3-201ENST00000228251 APLP2Q06481 763 aa29.28■■■□□ 2.28
YBX3-201ENST00000228251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.27■■■□□ 2.28
YBX3-201ENST00000228251 CTTNBP2Q8WZ74 1663 aa29.26■■■□□ 2.28
YBX3-201ENST00000228251 MAP3K1Q13233 1512 aa29.19■■■□□ 2.26
YBX3-201ENST00000228251 GAPVD1Q14C86 1478 aa29.18■■■□□ 2.26
YBX3-201ENST00000228251 CCER1Q8TC90 406 aaPredicted RBP29.16■■■□□ 2.26
YBX3-201ENST00000228251 EFCAB5A4FU69 1503 aa29.14■■■□□ 2.26
YBX3-201ENST00000228251 MRC2Q9UBG0 1479 aa29.14■■■□□ 2.26
YBX3-201ENST00000228251 KANK4Q5T7N3 995 aaPredicted RBP29.13■■■□□ 2.25
YBX3-201ENST00000228251 TDRD9Q8NDG6 1382 aaKnown RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms