RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.62
USP39-212ENST00000465514 ABCC9O60706 1549 aa23.54■■□□□ 1.36
USP39-212ENST00000465514 CCDC180Q9P1Z9 1646 aa22.94■■□□□ 1.26
USP39-212ENST00000465514 DNAJC5BQ9UF47 199 aa22.64■■□□□ 1.21
USP39-212ENST00000465514 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
USP39-212ENST00000465514 NACADO15069 1562 aa21.78■■□□□ 1.08
USP39-212ENST00000465514 PABPN1Q86U42 306 aaKnown RBP eCLIP21.76■■□□□ 1.07
USP39-212ENST00000465514 UNC13AQ9UPW8 1703 aa21.76■■□□□ 1.07
USP39-212ENST00000465514 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
USP39-212ENST00000465514 BICRAQ9NZM4 1560 aa21.53■■□□□ 1.04
USP39-212ENST00000465514 DCAF8L2P0C7V8 631 aa21.44■■□□□ 1.02
USP39-212ENST00000465514 CC2D2AQ9P2K1 1620 aa21.28■■□□□ 1
USP39-212ENST00000465514 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
USP39-212ENST00000465514 DNAJC5Q9H3Z4 198 aa21.27■■□□□ 1
USP39-212ENST00000465514 MYO15BQ96JP2 1530 aa21.23■□□□□ 0.99
USP39-212ENST00000465514 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
USP39-212ENST00000465514 EIF4G1Q04637 1599 aaKnown RBP21.05■□□□□ 0.96
USP39-212ENST00000465514 SCRIBQ14160 1630 aa20.86■□□□□ 0.93
USP39-212ENST00000465514 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
USP39-212ENST00000465514 DCAF1Q9Y4B6 1507 aa20.71■□□□□ 0.91
USP39-212ENST00000465514 CUX2O14529 1486 aa20.56■□□□□ 0.88
USP39-212ENST00000465514 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
USP39-212ENST00000465514 ERCC6Q03468 1493 aa20.37■□□□□ 0.85
USP39-212ENST00000465514 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
USP39-212ENST00000465514 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
USP39-212ENST00000465514 NESP48681 1621 aa20.05■□□□□ 0.8
USP39-212ENST00000465514 THOC2Q8NI27 1593 aaKnown RBP20.04■□□□□ 0.8
USP39-212ENST00000465514 ATAD2BQ9ULI0 1458 aa19.94■□□□□ 0.78
USP39-212ENST00000465514 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
USP39-212ENST00000465514 SMARCA2P51531 1590 aa19.87■□□□□ 0.77
USP39-212ENST00000465514 KIF21AQ7Z4S6 1674 aa19.86■□□□□ 0.77
USP39-212ENST00000465514 SMARCA4P51532 1647 aa19.81■□□□□ 0.76
USP39-212ENST00000465514 LAMC3Q9Y6N6 1575 aa19.79■□□□□ 0.76
USP39-212ENST00000465514 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
USP39-212ENST00000465514 BAZ1AQ9NRL2 1556 aaPredicted RBP19.65■□□□□ 0.74
USP39-212ENST00000465514 PDS5BQ9NTI5 1447 aa19.64■□□□□ 0.73
USP39-212ENST00000465514 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
USP39-212ENST00000465514 MRC2Q9UBG0 1479 aa19.56■□□□□ 0.72
USP39-212ENST00000465514 WDR62O43379 1518 aa19.56■□□□□ 0.72
USP39-212ENST00000465514 OSCARQ8IYS5 282 aa19.43■□□□□ 0.7
USP39-212ENST00000465514 CADPSQ9ULU8 1353 aa19.42■□□□□ 0.7
USP39-212ENST00000465514 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
USP39-212ENST00000465514 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
USP39-212ENST00000465514 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
USP39-212ENST00000465514 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
USP39-212ENST00000465514 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
USP39-212ENST00000465514 FANCD2Q9BXW9 1451 aa19.25■□□□□ 0.67
USP39-212ENST00000465514 ARHGEF11O15085 1522 aa19.23■□□□□ 0.67
USP39-212ENST00000465514 WIZO95785 1651 aa19.17■□□□□ 0.66
USP39-212ENST00000465514 URB2Q14146 1524 aaKnown RBP19.16■□□□□ 0.66
USP39-212ENST00000465514 CFTRP13569 1480 aa19.09■□□□□ 0.65
USP39-212ENST00000465514 TRHP20396 242 aaPredicted RBP19.06■□□□□ 0.64
USP39-212ENST00000465514 CYB5RLQ6IPT4 315 aa19.04■□□□□ 0.64
USP39-212ENST00000465514 ZNF608Q9ULD9 1512 aaPredicted RBP19.04■□□□□ 0.64
USP39-212ENST00000465514 PRDM2Q13029 1718 aa19■□□□□ 0.63
USP39-212ENST00000465514 ARAP1Q96P48 1450 aa18.99■□□□□ 0.63
USP39-212ENST00000465514 CHD1O14646 1710 aa18.98■□□□□ 0.63
USP39-212ENST00000465514 IFT140Q96RY7 1462 aa18.96■□□□□ 0.63
USP39-212ENST00000465514 EIF4G3O43432 1585 aaKnown RBP18.95■□□□□ 0.62
USP39-212ENST00000465514 TOP2AP11388 1531 aaKnown RBP18.84■□□□□ 0.61
USP39-212ENST00000465514 RSF1Q96T23 1441 aaPredicted RBP18.83■□□□□ 0.61
USP39-212ENST00000465514 TOPBP1Q92547 1522 aa18.82■□□□□ 0.6
USP39-212ENST00000465514 TARBP1Q13395 1621 aaKnown RBP18.75■□□□□ 0.59
USP39-212ENST00000465514 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.591e-6■■■□□ 15.3
USP39-212ENST00000465514 FBLN2P98095 1184 aa18.72■□□□□ 0.59
USP39-212ENST00000465514 DNMBPQ6XZF7 1577 aa18.72■□□□□ 0.59
USP39-212ENST00000465514 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
USP39-212ENST00000465514 CLASP1Q7Z460 1538 aa18.67■□□□□ 0.58
USP39-212ENST00000465514 CCDC88BA6NC98 1476 aa18.59■□□□□ 0.57
USP39-212ENST00000465514 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
USP39-212ENST00000465514 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.57
USP39-212ENST00000465514 SNAPC4Q5SXM2 1469 aa18.57■□□□□ 0.56
USP39-212ENST00000465514 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.55
USP39-212ENST00000465514 TDRD9Q8NDG6 1382 aaKnown RBP18.5■□□□□ 0.55
USP39-212ENST00000465514 SENP3Q9H4L4 574 aaPredicted RBP18.49■□□□□ 0.55
USP39-212ENST00000465514 WDR97A6NE52 1622 aa18.49■□□□□ 0.55
USP39-212ENST00000465514 GAPVD1Q14C86 1478 aa18.48■□□□□ 0.55
USP39-212ENST00000465514 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.55
USP39-212ENST00000465514 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
USP39-212ENST00000465514 SOGA1O94964 1423 aa18.43■□□□□ 0.54
USP39-212ENST00000465514 SYNJ2O15056 1496 aa18.41■□□□□ 0.54
USP39-212ENST00000465514 PBRM1Q86U86 1689 aa18.39■□□□□ 0.53
USP39-212ENST00000465514 KIF13AQ9H1H9 1805 aa18.39■□□□□ 0.53
USP39-212ENST00000465514 GRIN2BQ13224 1484 aa18.39■□□□□ 0.53
USP39-212ENST00000465514 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
USP39-212ENST00000465514 ERCC6L2Q5T890 1561 aa18.34■□□□□ 0.53
USP39-212ENST00000465514 ILDR1Q86SU0 546 aaPredicted RBP18.3■□□□□ 0.52
USP39-212ENST00000465514 CUX1P39880 1505 aa18.27■□□□□ 0.51
USP39-212ENST00000465514 CEP170Q5SW79 1584 aa18.23■□□□□ 0.51
USP39-212ENST00000465514 ABCA5Q8WWZ7 1642 aa18.21■□□□□ 0.51
USP39-212ENST00000465514 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
USP39-212ENST00000465514 SHROOM2Q13796 1616 aa18.18■□□□□ 0.5
USP39-212ENST00000465514 GRIN2AQ12879 1464 aa18.17■□□□□ 0.5
USP39-212ENST00000465514 KDM4FA0A1W2PPD8 638 aa18.13■□□□□ 0.49
USP39-212ENST00000465514 ADAMTS12P58397 1594 aa18.13■□□□□ 0.49
USP39-212ENST00000465514 NUP160Q12769 1436 aa18.11■□□□□ 0.49
USP39-212ENST00000465514 ABCA10Q8WWZ4 1543 aa18.11■□□□□ 0.49
USP39-212ENST00000465514 KDM6BO15054 1643 aa18.09■□□□□ 0.49
USP39-212ENST00000465514 DIP2BQ9P265 1576 aa18.07■□□□□ 0.48
USP39-212ENST00000465514 ABCC10Q5T3U5 1492 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms