RNA–Protein interactions for RNA: ENST00000524773.5

CAPN1-202, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-202ENST00000524773 NISCHQ9Y2I1 1504 aa26.17■■□□□ 1.78
CAPN1-202ENST00000524773 SHROOM4Q9ULL8 1493 aa23.01■■□□□ 1.27
CAPN1-202ENST00000524773 SUPT5HO00267 1087 aaKnown RBP22.74■■□□□ 1.23
CAPN1-202ENST00000524773 CCDC180Q9P1Z9 1646 aa22.62■■□□□ 1.21
CAPN1-202ENST00000524773 MYO15BQ96JP2 1530 aa22.13■■□□□ 1.13
CAPN1-202ENST00000524773 HRCP23327 699 aa22.09■■□□□ 1.13
CAPN1-202ENST00000524773 PCGF6Q9BYE7 350 aa22.08■■□□□ 1.13
CAPN1-202ENST00000524773 PPARGC1BQ86YN6 1023 aaKnown RBP22.04■■□□□ 1.12
CAPN1-202ENST00000524773 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
CAPN1-202ENST00000524773 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
CAPN1-202ENST00000524773 ZCCHC6Q5VYS8 1495 aaKnown RBP22■■□□□ 1.11
CAPN1-202ENST00000524773 LOC105371045A0A1W2PR82 267 aa21.72■■□□□ 1.07
CAPN1-202ENST00000524773 DCAF1Q9Y4B6 1507 aa21.56■■□□□ 1.04
CAPN1-202ENST00000524773 ABCC9O60706 1549 aa21.36■■□□□ 1.01
CAPN1-202ENST00000524773 EHMT2Q96KQ7 1210 aa21.27■□□□□ 0.99
CAPN1-202ENST00000524773 TRIM26Q12899 539 aaPredicted RBP21.18■□□□□ 0.98
CAPN1-202ENST00000524773 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
CAPN1-202ENST00000524773 NACADO15069 1562 aa21.06■□□□□ 0.96
CAPN1-202ENST00000524773 SCRIBQ14160 1630 aa20.96■□□□□ 0.95
CAPN1-202ENST00000524773 TRIM41Q8WV44 630 aa20.88■□□□□ 0.93
CAPN1-202ENST00000524773 SCAF1Q9H7N4 1312 aaKnown RBP20.85■□□□□ 0.93
CAPN1-202ENST00000524773 RB1CC1Q8TDY2 1594 aa20.84■□□□□ 0.93
CAPN1-202ENST00000524773 ZEB1P37275 1124 aaPredicted RBP20.7■□□□□ 0.9
CAPN1-202ENST00000524773 RSF1Q96T23 1441 aaPredicted RBP20.64■□□□□ 0.89
CAPN1-202ENST00000524773 TTBK1Q5TCY1 1321 aaPredicted RBP20.62■□□□□ 0.89
CAPN1-202ENST00000524773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.62■□□□□ 0.89
CAPN1-202ENST00000524773 CCER1Q8TC90 406 aaPredicted RBP20.45■□□□□ 0.86
CAPN1-202ENST00000524773 NEUROD1Q13562 356 aa20.43■□□□□ 0.86
CAPN1-202ENST00000524773 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
CAPN1-202ENST00000524773 PELP1Q8IZL8 1130 aaKnown RBP20.43■□□□□ 0.86
CAPN1-202ENST00000524773 CECR2Q9BXF3 1484 aa20.38■□□□□ 0.85
CAPN1-202ENST00000524773 ACIN1Q9UKV3 1341 aaKnown RBP20.32■□□□□ 0.84
CAPN1-202ENST00000524773 GTF3C3Q9Y5Q9 886 aa20.28■□□□□ 0.84
CAPN1-202ENST00000524773 PABPN1Q86U42 306 aaKnown RBP eCLIP20.26■□□□□ 0.833e-6■■■□□ 14.7
CAPN1-202ENST00000524773 MROH2BQ7Z745 1585 aa20.26■□□□□ 0.83
CAPN1-202ENST00000524773 DIEXFQ68CQ4 756 aaKnown RBP20.24■□□□□ 0.83
CAPN1-202ENST00000524773 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
CAPN1-202ENST00000524773 BAZ1AQ9NRL2 1556 aaPredicted RBP20.18■□□□□ 0.82
CAPN1-202ENST00000524773 YTHDC1Q96MU7 727 aaKnown RBP20.15■□□□□ 0.82
CAPN1-202ENST00000524773 WIZO95785 1651 aa20.11■□□□□ 0.81
CAPN1-202ENST00000524773 SMARCA4P51532 1647 aa20.05■□□□□ 0.8
CAPN1-202ENST00000524773 CENPBP07199 599 aaPredicted RBP20.02■□□□□ 0.8
CAPN1-202ENST00000524773 ABCC8Q09428 1581 aa19.96■□□□□ 0.79
CAPN1-202ENST00000524773 UBTFP17480 764 aaKnown RBP19.92■□□□□ 0.78
CAPN1-202ENST00000524773 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
CAPN1-202ENST00000524773 HNRNPUL2Q1KMD3 747 aaKnown RBP19.9■□□□□ 0.78
CAPN1-202ENST00000524773 SOGA1O94964 1423 aa19.89■□□□□ 0.77
CAPN1-202ENST00000524773 CEP162Q5TB80 1403 aa19.87■□□□□ 0.77
CAPN1-202ENST00000524773 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
CAPN1-202ENST00000524773 RANGAP1P46060 587 aaPredicted RBP19.85■□□□□ 0.77
CAPN1-202ENST00000524773 MIER1Q8N108 512 aa19.85■□□□□ 0.77
CAPN1-202ENST00000524773 TOP2AP11388 1531 aaKnown RBP19.85■□□□□ 0.77
CAPN1-202ENST00000524773 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
CAPN1-202ENST00000524773 PEG3Q9GZU2 1588 aa19.75■□□□□ 0.75
CAPN1-202ENST00000524773 EIF4G1Q04637 1599 aaKnown RBP19.73■□□□□ 0.75
CAPN1-202ENST00000524773 CSRNP3Q8WYN3 585 aa19.72■□□□□ 0.75
CAPN1-202ENST00000524773 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
CAPN1-202ENST00000524773 WRNQ14191 1432 aaPredicted RBP eCLIP19.69■□□□□ 0.74
CAPN1-202ENST00000524773 SMARCA2P51531 1590 aa19.69■□□□□ 0.74
CAPN1-202ENST00000524773 TNIKQ9UKE5 1360 aa19.64■□□□□ 0.74
CAPN1-202ENST00000524773 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
CAPN1-202ENST00000524773 EEA1Q15075 1411 aa19.51■□□□□ 0.71
CAPN1-202ENST00000524773 NCAPD3P42695 1498 aa19.46■□□□□ 0.71
CAPN1-202ENST00000524773 GOLGA3Q08378 1498 aa19.45■□□□□ 0.7
CAPN1-202ENST00000524773 APLP2Q06481 763 aa19.43■□□□□ 0.7
CAPN1-202ENST00000524773 HMGXB3Q12766 1538 aa19.42■□□□□ 0.7
CAPN1-202ENST00000524773 CLIP1P30622 1438 aa19.4■□□□□ 0.7
CAPN1-202ENST00000524773 MYT1Q01538 1121 aa19.36■□□□□ 0.69
CAPN1-202ENST00000524773 ITGAEP38570 1179 aa19.31■□□□□ 0.68
CAPN1-202ENST00000524773 SUPT16HQ9Y5B9 1047 aaKnown RBP19.31■□□□□ 0.68
CAPN1-202ENST00000524773 KCNH8Q96L42 1107 aa19.29■□□□□ 0.68
CAPN1-202ENST00000524773 RAPGEF2Q9Y4G8 1499 aa19.29■□□□□ 0.68
CAPN1-202ENST00000524773 CC2D2AQ9P2K1 1620 aa19.27■□□□□ 0.68
CAPN1-202ENST00000524773 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
CAPN1-202ENST00000524773 KANK4Q5T7N3 995 aaPredicted RBP19.26■□□□□ 0.67
CAPN1-202ENST00000524773 VPS8Q8N3P4 1428 aa19.26■□□□□ 0.67
CAPN1-202ENST00000524773 CEP164Q9UPV0 1460 aa19.25■□□□□ 0.67
CAPN1-202ENST00000524773 BCANQ96GW7 911 aa19.23■□□□□ 0.67
CAPN1-202ENST00000524773 DHX57Q6P158 1386 aaKnown RBP19.19■□□□□ 0.66
CAPN1-202ENST00000524773 KIF21BO75037 1637 aa19.15■□□□□ 0.66
CAPN1-202ENST00000524773 TSHZ2Q9NRE2 1034 aa19.13■□□□□ 0.65
CAPN1-202ENST00000524773 CFTRP13569 1480 aa19.11■□□□□ 0.65
CAPN1-202ENST00000524773 HIRIP3Q9BW71 556 aaPredicted RBP19.07■□□□□ 0.64
CAPN1-202ENST00000524773 CADPSQ9ULU8 1353 aa19.03■□□□□ 0.64
CAPN1-202ENST00000524773 TOP2BQ02880 1626 aa18.99■□□□□ 0.63
CAPN1-202ENST00000524773 DDX10Q13206 875 aaKnown RBP18.99■□□□□ 0.63
CAPN1-202ENST00000524773 ARAP1Q96P48 1450 aa18.97■□□□□ 0.63
CAPN1-202ENST00000524773 FKBP8Q14318 412 aa18.97■□□□□ 0.63
CAPN1-202ENST00000524773 SIN3AQ96ST3 1273 aa18.96■□□□□ 0.63
CAPN1-202ENST00000524773 PRDM2Q13029 1718 aa18.95■□□□□ 0.62
CAPN1-202ENST00000524773 BIVM-ERCC5R4GMW8 1640 aa18.94■□□□□ 0.62
CAPN1-202ENST00000524773 CUX1P39880 1505 aa18.91■□□□□ 0.62
CAPN1-202ENST00000524773 CLSPNQ9HAW4 1339 aa18.91■□□□□ 0.62
CAPN1-202ENST00000524773 TRIM52Q96A61 297 aa18.9■□□□□ 0.62
CAPN1-202ENST00000524773 ANP32EQ9BTT0 268 aa18.89■□□□□ 0.61
CAPN1-202ENST00000524773 ATP1B4Q9UN42 357 aaPredicted RBP18.87■□□□□ 0.61
CAPN1-202ENST00000524773 CCNB3Q8WWL7 1395 aa18.87■□□□□ 0.61
CAPN1-202ENST00000524773 RAB3GAP2Q9H2M9 1393 aa18.86■□□□□ 0.61
CAPN1-202ENST00000524773 FAM50AQ14320 339 aaKnown RBP18.84■□□□□ 0.61
CAPN1-202ENST00000524773 ERICH3Q5RHP9 1530 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms