Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ENO1-206ENST00000497492 647 ntTSL 215.86■□□□□ 0.131e-56■■□□□ 13.1
YBX3P16989 KARS-203ENST00000562875 801 ntTSL 38□□□□□ -1.132e-7■■□□□ 13.1
YBX3P16989 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.048e-9■■□□□ 13.1
YBX3P16989 CAND1-204ENST00000540319 2786 ntTSL 26.13□□□□□ -1.438e-9■■□□□ 13.1
YBX3P16989 NUP93-206ENST00000563465 458 ntTSL 211.84□□□□□ -0.513e-12■■□□□ 13.1
YBX3P16989 NUP93-218ENST00000569322 410 ntTSL 310.01□□□□□ -0.813e-12■■□□□ 13.1
YBX3P16989 NUP93-209ENST00000564278 588 ntTSL 29.67□□□□□ -0.863e-12■■□□□ 13.1
YBX3P16989 AHCYL1-206ENST00000481423 732 ntTSL 38.68□□□□□ -1.021e-6■■□□□ 13.1
YBX3P16989 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.138e-8■■□□□ 13.1
YBX3P16989 FGFR4-213ENST00000511076 838 ntTSL 524.93■■□□□ 1.581e-6■■□□□ 13.1
YBX3P16989 FGFR4-206ENST00000483872 663 ntTSL 315.27■□□□□ 0.041e-6■■□□□ 13.1
YBX3P16989 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.192e-6■■□□□ 13.1
YBX3P16989 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15□□□□□ -0.012e-6■■□□□ 13.1
YBX3P16989 RNF182-204ENST00000488300 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.592e-6■■□□□ 13.1
YBX3P16989 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.77□□□□□ -1.492e-6■■□□□ 13.1
YBX3P16989 GTF3C3-211ENST00000481098 547 ntTSL 28.56□□□□□ -1.041e-9■■□□□ 13.1
YBX3P16989 FADS1-218ENST00000544696 567 ntTSL 325.96■■□□□ 1.755e-13■■□□□ 13.1
YBX3P16989 FADS1-207ENST00000466716 640 ntTSL 519.5■□□□□ 0.715e-13■■□□□ 13.1
YBX3P16989 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.37■□□□□ 0.692e-16■■□□□ 13.1
YBX3P16989 PPID-201ENST00000307720 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.612e-11■■□□□ 13.1
YBX3P16989 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.517e-7■■□□□ 13.1
YBX3P16989 DEAF1-207ENST00000527170 1623 ntTSL 1 (best)19.34■□□□□ 0.697e-7■■□□□ 13.1
YBX3P16989 RPL4P5-201ENST00000413888 1276 ntBASIC11.55□□□□□ -0.561e-9■■□□□ 13.1
YBX3P16989 C19orf54-202ENST00000469741 1792 ntTSL 219.55■□□□□ 0.724e-7■■□□□ 13.1
YBX3P16989 C19orf54-206ENST00000596940 492 ntTSL 318.95■□□□□ 0.624e-7■■□□□ 13.1
YBX3P16989 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.32■□□□□ 0.524e-7■■□□□ 13.1
YBX3P16989 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.214e-7■■□□□ 13.1
YBX3P16989 C19orf54-209ENST00000598485 553 ntTSL 5 BASIC14.99□□□□□ -0.014e-7■■□□□ 13.1
YBX3P16989 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.2■■□□□ 1.786e-19■■□□□ 13.1
YBX3P16989 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.696e-19■■□□□ 13.1
YBX3P16989 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.686e-19■■□□□ 13.1
YBX3P16989 HIGD1A-205ENST00000470543 983 ntTSL 217.76■□□□□ 0.436e-19■■□□□ 13.1
YBX3P16989 CALR-206ENST00000588454 776 ntTSL 315.72■□□□□ 0.115e-26■■□□□ 13.1
YBX3P16989 SMAD4-203ENST00000585448 459 ntTSL 56.59□□□□□ -1.355e-7■■□□□ 13.1
YBX3P16989 DNAJC6-205ENST00000472787 519 ntTSL 34.64□□□□□ -1.671e-9■■□□□ 13.1
YBX3P16989 GLUL-205ENST00000461447 689 ntTSL 215.41■□□□□ 0.063e-22■■□□□ 13.1
YBX3P16989 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.842e-7■■□□□ 13.1
YBX3P16989 SMYD3-202ENST00000366517 1372 ntTSL 1 (best)10.77□□□□□ -0.682e-7■■□□□ 13.1
YBX3P16989 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC10.62□□□□□ -0.712e-7■■□□□ 13.1
YBX3P16989 SMYD3-201ENST00000366516 1863 ntTSL 1 (best)9.28□□□□□ -0.922e-7■■□□□ 13.1
YBX3P16989 ATP5G2-207ENST00000552120 511 ntTSL 1 (best)8.83□□□□□ -12e-39■■□□□ 13.1
YBX3P16989 SMYD3-209ENST00000470510 1042 ntTSL 57.97□□□□□ -1.132e-7■■□□□ 13.1
YBX3P16989 ABL1-202ENST00000372348 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.462e-7■■□□□ 13.1
YBX3P16989 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.28■□□□□ 0.367e-9■■□□□ 13.1
YBX3P16989 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 07e-9■■□□□ 13.1
YBX3P16989 UBQLN1-205ENST00000529923 471 ntTSL 24.04□□□□□ -1.767e-9■■□□□ 13.1
YBX3P16989 SOCS2-209ENST00000549887 984 ntTSL 331.41■■■□□ 2.621e-6■■□□□ 13.1
YBX3P16989 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.621e-6■■□□□ 13.1
YBX3P16989 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.541e-6■■□□□ 13.1
YBX3P16989 HSF1-202ENST00000527328 2336 ntTSL 217.83■□□□□ 0.442e-6■■□□□ 13.1
YBX3P16989 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.38■□□□□ 0.373e-7■■□□□ 13.1
YBX3P16989 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.093e-7■■□□□ 13.1
YBX3P16989 PTPRA-203ENST00000356147 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.783e-7■■□□□ 13.1
YBX3P16989 PTPRA-202ENST00000318266 3219 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.783e-7■■□□□ 13.1
YBX3P16989 PTPRA-204ENST00000380393 3636 ntTSL 1 (best) BASIC9.31□□□□□ -0.923e-7■■□□□ 13.1
YBX3P16989 FXYD5-208ENST00000543307 1003 ntTSL 2 BASIC14.03□□□□□ -0.161e-13■■□□□ 13.1
YBX3P16989 PSMD1-204ENST00000431051 2506 ntTSL 1 (best)15.55■□□□□ 0.082e-6■■□□□ 13.1
YBX3P16989 PSMD1-203ENST00000409643 2901 ntTSL 5 BASIC11.4□□□□□ -0.582e-6■■□□□ 13.1
YBX3P16989 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.684e-8■■□□□ 13.1
YBX3P16989 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.46■■□□□ 1.674e-8■■□□□ 13.1
YBX3P16989 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24.71■■□□□ 1.554e-8■■□□□ 13.1
YBX3P16989 CENPX-209ENST00000584514 882 ntTSL 224.63■■□□□ 1.534e-8■■□□□ 13.1
YBX3P16989 CENPX-204ENST00000579520 702 ntTSL 322.2■■□□□ 1.144e-8■■□□□ 13.1
YBX3P16989 CENPX-210ENST00000584600 730 ntTSL 221.63■■□□□ 1.054e-8■■□□□ 13.1
YBX3P16989 STXBP2-210ENST00000595950 552 ntTSL 529.81■■■□□ 2.362e-8■■□□□ 13.1
YBX3P16989 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 521.03■□□□□ 0.962e-8■■□□□ 13.1
YBX3P16989 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.752e-8■■□□□ 13.1
YBX3P16989 STXBP2-204ENST00000593535 549 ntTSL 417.74■□□□□ 0.432e-8■■□□□ 13.1
YBX3P16989 CHID1-212ENST00000528426 991 ntTSL 537.27■■■■□ 3.562e-6■■□□□ 13.1
YBX3P16989 CHID1-217ENST00000530939 571 ntTSL 435.24■■■■□ 3.232e-6■■□□□ 13.1
YBX3P16989 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.462e-6■■□□□ 13.1
YBX3P16989 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.79■□□□□ 0.922e-6■■□□□ 13.1
YBX3P16989 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC19.3■□□□□ 0.682e-6■■□□□ 13.1
YBX3P16989 CHID1-224ENST00000534254 1019 ntTSL 518.82■□□□□ 0.62e-6■■□□□ 13.1
YBX3P16989 CHID1-222ENST00000533059 578 ntTSL 317.77■□□□□ 0.442e-6■■□□□ 13.1
YBX3P16989 CHID1-219ENST00000531859 834 ntTSL 517.57■□□□□ 0.42e-6■■□□□ 13.1
YBX3P16989 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.222e-6■■□□□ 13.1
YBX3P16989 CHID1-208ENST00000525225 523 ntTSL 515.27■□□□□ 0.042e-6■■□□□ 13.1
YBX3P16989 CHID1-210ENST00000526714 976 ntTSL 513.35□□□□□ -0.272e-6■■□□□ 13.1
YBX3P16989 CHID1-205ENST00000454838 3255 ntTSL 5 BASIC13.27□□□□□ -0.292e-6■■□□□ 13.1
YBX3P16989 CHID1-221ENST00000533056 752 ntTSL 312.06□□□□□ -0.482e-6■■□□□ 13.1
YBX3P16989 CHID1-204ENST00000449825 3537 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.512e-6■■□□□ 13.1
YBX3P16989 FLOT2-211ENST00000586827 1069 ntTSL 517.35■□□□□ 0.371e-6■■□□□ 13.1
YBX3P16989 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.418e-7■■□□□ 13.1
YBX3P16989 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.188e-7■■□□□ 13.1
YBX3P16989 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.364e-9■■□□□ 13.1
YBX3P16989 QSER1-202ENST00000524678 2416 ntTSL 29.79□□□□□ -0.841e-6■■□□□ 13.1
YBX3P16989 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.362e-6■■□□□ 13.1
YBX3P16989 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC26.89■■□□□ 1.94e-8■■□□□ 13.1
YBX3P16989 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC26.89■■□□□ 1.94e-8■■□□□ 13.1
YBX3P16989 MAT2B-206ENST00000520449 557 ntTSL 426.23■■□□□ 1.792e-6■■□□□ 13.1
YBX3P16989 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.624e-8■■□□□ 13.1
YBX3P16989 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.95■■□□□ 1.584e-8■■□□□ 13.1
YBX3P16989 DCTN3-206ENST00000421919 687 ntTSL 224.95■■□□□ 1.584e-8■■□□□ 13.1
YBX3P16989 MAT2B-203ENST00000421814 698 ntTSL 523.72■■□□□ 1.392e-6■■□□□ 13.1
YBX3P16989 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC14.24□□□□□ -0.132e-6■■□□□ 13.1
YBX3P16989 MAT2B-208ENST00000523606 3210 ntTSL 213.46□□□□□ -0.262e-6■■□□□ 13.1
YBX3P16989 DCTN3-204ENST00000378913 951 ntTSL 1 (best) BASIC12.73□□□□□ -0.374e-8■■□□□ 13.1
YBX3P16989 MAT2B-202ENST00000321757 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-6■■□□□ 13.1
YBX3P16989 DCTN3-207ENST00000472074 542 ntTSL 510.44□□□□□ -0.744e-8■■□□□ 13.1
Retrieved 100 of 29,075 protein–RNA pairs in 242.4 ms