RNA–Protein interactions for RNA: ENST00000481098.1

GTF3C3-211, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 2

Gene GTF3C3, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-211ENST00000481098 AEBP2Q6ZN18 517 aaPredicted RBP31.66■■■□□ 2.66
GTF3C3-211ENST00000481098 CHIC1Q5VXU3 224 aa30.97■■■□□ 2.55
GTF3C3-211ENST00000481098 PHF23Q9BUL5 403 aaPredicted RBP27.23■■□□□ 1.95
GTF3C3-211ENST00000481098 SENP3Q9H4L4 574 aaPredicted RBP26.91■■□□□ 1.9
GTF3C3-211ENST00000481098 PLPPR3Q6T4P5 718 aa25.15■■□□□ 1.62
GTF3C3-211ENST00000481098 FOXD1Q16676 465 aa24.93■■□□□ 1.58
GTF3C3-211ENST00000481098 PPP6R1Q9UPN7 881 aa23.99■■□□□ 1.43
GTF3C3-211ENST00000481098 ADRA2BP18089 450 aa23.94■■□□□ 1.42
GTF3C3-211ENST00000481098 PIAS4Q8N2W9 510 aaPredicted RBP23.49■■□□□ 1.35
GTF3C3-211ENST00000481098 MSH5O43196 834 aa23.02■■□□□ 1.28
GTF3C3-211ENST00000481098 PPP4R3CPQ6ZMV5 832 aa22.13■■□□□ 1.13
GTF3C3-211ENST00000481098 SCAF1Q9H7N4 1312 aaKnown RBP21.95■■□□□ 1.1
GTF3C3-211ENST00000481098 MAPK8IP2Q13387 824 aaPredicted RBP21.69■■□□□ 1.06
GTF3C3-211ENST00000481098 KCNA4P22459 653 aa21.64■■□□□ 1.05
GTF3C3-211ENST00000481098 NCBP3Q53F19 620 aaKnown RBP21.58■■□□□ 1.05
GTF3C3-211ENST00000481098 CNKSR2Q8WXI2 1034 aa21.54■■□□□ 1.04
GTF3C3-211ENST00000481098 DMRT2Q9Y5R5 561 aa21.49■■□□□ 1.03
GTF3C3-211ENST00000481098 NPM3O75607 178 aaKnown RBP21.26■□□□□ 0.99
GTF3C3-211ENST00000481098 RNF216Q9NWF9 866 aaPredicted RBP21.14■□□□□ 0.97
GTF3C3-211ENST00000481098 HOXD11P31277 338 aaPredicted RBP21.07■□□□□ 0.96
GTF3C3-211ENST00000481098 POTEDQ86YR6 584 aa20.88■□□□□ 0.93
GTF3C3-211ENST00000481098 DNAJC5BQ9UF47 199 aa20.83■□□□□ 0.93
GTF3C3-211ENST00000481098 SLC4A1APQ9BWU0 796 aaKnown RBP20.6■□□□□ 0.89
GTF3C3-211ENST00000481098 DCAF8L1A6NGE4 600 aa20.39■□□□□ 0.85
GTF3C3-211ENST00000481098 SLC4A2P04920 1241 aa20.09■□□□□ 0.81
GTF3C3-211ENST00000481098 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.97■□□□□ 0.79
GTF3C3-211ENST00000481098 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
GTF3C3-211ENST00000481098 ZBTB22O15209 634 aa19.93■□□□□ 0.78
GTF3C3-211ENST00000481098 FOXD4L1Q9NU39 408 aa19.93■□□□□ 0.78
GTF3C3-211ENST00000481098 CSRNP3Q8WYN3 585 aa19.81■□□□□ 0.76
GTF3C3-211ENST00000481098 RNF39Q9H2S5 420 aa19.73■□□□□ 0.75
GTF3C3-211ENST00000481098 U3KPZ7 1027 aaPredicted RBP19.7■□□□□ 0.74
GTF3C3-211ENST00000481098 MYCNP04198 464 aaPredicted RBP19.66■□□□□ 0.74
GTF3C3-211ENST00000481098 C1QBPQ07021 282 aaKnown RBP19.51■□□□□ 0.71
GTF3C3-211ENST00000481098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
GTF3C3-211ENST00000481098 HNRNPUL2Q1KMD3 747 aaKnown RBP19.49■□□□□ 0.71
GTF3C3-211ENST00000481098 SAMD1Q6SPF0 538 aaPredicted RBP19.42■□□□□ 0.7
GTF3C3-211ENST00000481098 ATXN8OSP0DMR3 200 aa19.31■□□□□ 0.68
GTF3C3-211ENST00000481098 APLP2Q06481 763 aa19.28■□□□□ 0.68
GTF3C3-211ENST00000481098 CACNB1Q02641 598 aaPredicted RBP19.11■□□□□ 0.65
GTF3C3-211ENST00000481098 SPINK5Q9NQ38 1064 aaPredicted RBP19.11■□□□□ 0.65
GTF3C3-211ENST00000481098 ATF5Q9Y2D1 282 aaPredicted RBP19.08■□□□□ 0.64
GTF3C3-211ENST00000481098 CAPN15O75808 1086 aa19■□□□□ 0.63
GTF3C3-211ENST00000481098 ZNF219Q9P2Y4 722 aaPredicted RBP19■□□□□ 0.63
GTF3C3-211ENST00000481098 TRHP20396 242 aaPredicted RBP18.89■□□□□ 0.61
GTF3C3-211ENST00000481098 DSG3P32926 999 aa18.75■□□□□ 0.59
GTF3C3-211ENST00000481098 POLA2Q14181 598 aa18.65■□□□□ 0.58
GTF3C3-211ENST00000481098 ABCB7O75027 752 aa18.62■□□□□ 0.57
GTF3C3-211ENST00000481098 ZBTB12Q9Y330 459 aaPredicted RBP18.42■□□□□ 0.54
GTF3C3-211ENST00000481098 FBLN2P98095 1184 aa18.3■□□□□ 0.52
GTF3C3-211ENST00000481098 MKRN4PQ13434 485 aaPredicted RBP18.3■□□□□ 0.52
GTF3C3-211ENST00000481098 OSCARQ8IYS5 282 aa18.01■□□□□ 0.47
GTF3C3-211ENST00000481098 SPDYE2BA6NHP3 402 aa17.91■□□□□ 0.46
GTF3C3-211ENST00000481098 SPDYE6P0CI01 402 aa17.91■□□□□ 0.46
GTF3C3-211ENST00000481098 SPDYE2Q495Y8 402 aa17.91■□□□□ 0.46
GTF3C3-211ENST00000481098 RBM42Q9BTD8 480 aaKnown RBP17.89■□□□□ 0.45
GTF3C3-211ENST00000481098 SPDYE4A6NLX3 237 aa17.86■□□□□ 0.45
GTF3C3-211ENST00000481098 FKBP8Q14318 412 aa17.86■□□□□ 0.45
GTF3C3-211ENST00000481098 SSUH2Q9Y2M2 353 aa17.8■□□□□ 0.44
GTF3C3-211ENST00000481098 ZNF692Q9BU19 519 aaPredicted RBP17.77■□□□□ 0.44
GTF3C3-211ENST00000481098 PROM2Q8N271 834 aa17.7■□□□□ 0.42
GTF3C3-211ENST00000481098 AKT1S1Q96B36 256 aa17.68■□□□□ 0.42
GTF3C3-211ENST00000481098 PABPN1Q86U42 306 aaKnown RBP eCLIP17.54■□□□□ 0.4
GTF3C3-211ENST00000481098 REM2Q8IYK8 340 aaPredicted RBP17.47■□□□□ 0.39
GTF3C3-211ENST00000481098 SPDYE1Q8NFV5 336 aaPredicted RBP17.36■□□□□ 0.37
GTF3C3-211ENST00000481098 STAG3Q9UJ98 1225 aa17.31■□□□□ 0.36
GTF3C3-211ENST00000481098 FBXO3Q9UK99 471 aa17.3■□□□□ 0.36
GTF3C3-211ENST00000481098 PITPNM1O00562 1244 aa17.27■□□□□ 0.36
GTF3C3-211ENST00000481098 CLEC11AQ9Y240 323 aa17.17■□□□□ 0.34
GTF3C3-211ENST00000481098 CHRDL2Q6WN34 429 aa17.11■□□□□ 0.33
GTF3C3-211ENST00000481098 PRR29P0C7W0 189 aa17.07■□□□□ 0.32
GTF3C3-211ENST00000481098 VASPP50552 380 aaPredicted RBP17.05■□□□□ 0.32
GTF3C3-211ENST00000481098 FXR2P51116 673 aaKnown RBP eCLIP16.98■□□□□ 0.31
GTF3C3-211ENST00000481098 CREBZFQ9NS37 354 aa16.91■□□□□ 0.3
GTF3C3-211ENST00000481098 MIER1Q8N108 512 aa16.9■□□□□ 0.3
GTF3C3-211ENST00000481098 PIP4P2Q8N4L2 257 aa16.89■□□□□ 0.29
GTF3C3-211ENST00000481098 PLCD3Q8N3E9 789 aa16.87■□□□□ 0.29
GTF3C3-211ENST00000481098 PLEKHG5O94827 1062 aa16.83■□□□□ 0.28
GTF3C3-211ENST00000481098 PRKAR2AP13861 404 aaKnown RBP16.8■□□□□ 0.28
GTF3C3-211ENST00000481098 IFNLR1Q8IU57 520 aaPredicted RBP16.8■□□□□ 0.28
GTF3C3-211ENST00000481098 MNX1P50219 401 aaPredicted RBP16.78■□□□□ 0.28
GTF3C3-211ENST00000481098 ZBTB47Q9UFB7 747 aaPredicted RBP16.77■□□□□ 0.28
GTF3C3-211ENST00000481098 CHADLQ6NUI6 762 aa16.76■□□□□ 0.27
GTF3C3-211ENST00000481098 FARP1Q9Y4F1 1045 aaPredicted RBP16.69■□□□□ 0.26
GTF3C3-211ENST00000481098 KLHL34Q8N239 644 aa16.65■□□□□ 0.26
GTF3C3-211ENST00000481098 NPM1P06748 294 aaKnown RBP eCLIP16.61■□□□□ 0.25
GTF3C3-211ENST00000481098 SPOCK2Q92563 424 aa16.59■□□□□ 0.25
GTF3C3-211ENST00000481098 NUBP1P53384 320 aa16.54■□□□□ 0.24
GTF3C3-211ENST00000481098 POTEHQ6S545 545 aa16.54■□□□□ 0.24
GTF3C3-211ENST00000481098 RASEFQ8IZ41 740 aa16.43■□□□□ 0.22
GTF3C3-211ENST00000481098 C19orf67A6NJJ6 358 aa16.4■□□□□ 0.22
GTF3C3-211ENST00000481098 FAM212AQ96EL1 285 aa16.38■□□□□ 0.21
GTF3C3-211ENST00000481098 AMER1Q5JTC6 1135 aaPredicted RBP16.37■□□□□ 0.21
GTF3C3-211ENST00000481098 GSE1Q14687 1217 aa16.34■□□□□ 0.21
GTF3C3-211ENST00000481098 CD44P16070 742 aaKnown RBP16.33■□□□□ 0.2
GTF3C3-211ENST00000481098 PAK3O75914 559 aaPredicted RBP16.3■□□□□ 0.2
GTF3C3-211ENST00000481098 HAX1O00165 279 aa16.28■□□□□ 0.2
GTF3C3-211ENST00000481098 DCAF8Q5TAQ9 597 aa16.28■□□□□ 0.2
GTF3C3-211ENST00000481098 TSPYL2Q9H2G4 693 aaPredicted RBP16.27■□□□□ 0.2
GTF3C3-211ENST00000481098 RTN4Q9NQC3 1192 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms