RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
PTPRA-202ENST00000318266 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
PTPRA-202ENST00000318266 ABCC9O60706 1549 aa16.84■□□□□ 0.29
PTPRA-202ENST00000318266 SHROOM4Q9ULL8 1493 aa16.51■□□□□ 0.23
PTPRA-202ENST00000318266 SUPT5HO00267 1087 aaKnown RBP16.41■□□□□ 0.22
PTPRA-202ENST00000318266 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
PTPRA-202ENST00000318266 HRCP23327 699 aa16.25■□□□□ 0.19
PTPRA-202ENST00000318266 NACADO15069 1562 aa16.24■□□□□ 0.19
PTPRA-202ENST00000318266 PCGF6Q9BYE7 350 aa16.13■□□□□ 0.17
PTPRA-202ENST00000318266 MYO15BQ96JP2 1530 aa16.11■□□□□ 0.17
PTPRA-202ENST00000318266 PPARGC1BQ86YN6 1023 aaKnown RBP16.11■□□□□ 0.17
PTPRA-202ENST00000318266 CHIC1Q5VXU3 224 aa15.94■□□□□ 0.14
PTPRA-202ENST00000318266 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
PTPRA-202ENST00000318266 UNC13AQ9UPW8 1703 aa15.84■□□□□ 0.13
PTPRA-202ENST00000318266 BICRAQ9NZM4 1560 aa15.71■□□□□ 0.11
PTPRA-202ENST00000318266 DCAF8L2P0C7V8 631 aa15.71■□□□□ 0.11
PTPRA-202ENST00000318266 LOC105371045A0A1W2PR82 267 aa15.7■□□□□ 0.1
PTPRA-202ENST00000318266 DCAF1Q9Y4B6 1507 aa15.68■□□□□ 0.1
PTPRA-202ENST00000318266 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
PTPRA-202ENST00000318266 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
PTPRA-202ENST00000318266 CC2D2AQ9P2K1 1620 aa15.44■□□□□ 0.06
PTPRA-202ENST00000318266 CECR2Q9BXF3 1484 aa15.41■□□□□ 0.06
PTPRA-202ENST00000318266 PELP1Q8IZL8 1130 aaKnown RBP15.39■□□□□ 0.05
PTPRA-202ENST00000318266 SCAF1Q9H7N4 1312 aaKnown RBP15.38■□□□□ 0.05
PTPRA-202ENST00000318266 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.054e-6■■□□□ 13.3
PTPRA-202ENST00000318266 EIF4G1Q04637 1599 aaKnown RBP15.37■□□□□ 0.05
PTPRA-202ENST00000318266 EHMT2Q96KQ7 1210 aa15.3■□□□□ 0.04
PTPRA-202ENST00000318266 ZEB1P37275 1124 aaPredicted RBP15.25■□□□□ 0.03
PTPRA-202ENST00000318266 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
PTPRA-202ENST00000318266 FAM9AQ8IZU1 332 aaPredicted RBP15.24■□□□□ 0.03
PTPRA-202ENST00000318266 CUX2O14529 1486 aa15.19■□□□□ 0.02
PTPRA-202ENST00000318266 TRIM41Q8WV44 630 aa15.09■□□□□ 0.01
PTPRA-202ENST00000318266 SCRIBQ14160 1630 aa15.08■□□□□ 0
PTPRA-202ENST00000318266 NEUROD1Q13562 356 aa15.02■□□□□ -0
PTPRA-202ENST00000318266 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15□□□□□ -0.01
PTPRA-202ENST00000318266 ACIN1Q9UKV3 1341 aaKnown RBP14.99□□□□□ -0.01
PTPRA-202ENST00000318266 GTF3C3Q9Y5Q9 886 aa14.94□□□□□ -0.02
PTPRA-202ENST00000318266 CCER1Q8TC90 406 aaPredicted RBP14.94□□□□□ -0.02
PTPRA-202ENST00000318266 TTBK1Q5TCY1 1321 aaPredicted RBP14.89□□□□□ -0.03
PTPRA-202ENST00000318266 NCAPD3P42695 1498 aa14.86□□□□□ -0.03
PTPRA-202ENST00000318266 DIEXFQ68CQ4 756 aaKnown RBP14.85□□□□□ -0.03
PTPRA-202ENST00000318266 HMGXB3Q12766 1538 aa14.84□□□□□ -0.03
PTPRA-202ENST00000318266 CENPBP07199 599 aaPredicted RBP14.82□□□□□ -0.04
PTPRA-202ENST00000318266 RSF1Q96T23 1441 aaPredicted RBP14.79□□□□□ -0.04
PTPRA-202ENST00000318266 SMARCA2P51531 1590 aa14.78□□□□□ -0.04
PTPRA-202ENST00000318266 YTHDC1Q96MU7 727 aaKnown RBP14.76□□□□□ -0.05
PTPRA-202ENST00000318266 ERCC6Q03468 1493 aa14.73□□□□□ -0.05
PTPRA-202ENST00000318266 MYT1Q01538 1121 aa14.69□□□□□ -0.06
PTPRA-202ENST00000318266 LAMC3Q9Y6N6 1575 aa14.67□□□□□ -0.06
PTPRA-202ENST00000318266 PEG3Q9GZU2 1588 aa14.67□□□□□ -0.06
PTPRA-202ENST00000318266 THOC2Q8NI27 1593 aaKnown RBP14.65□□□□□ -0.06
PTPRA-202ENST00000318266 ATAD2BQ9ULI0 1458 aa14.62□□□□□ -0.07
PTPRA-202ENST00000318266 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
PTPRA-202ENST00000318266 BAZ1AQ9NRL2 1556 aaPredicted RBP14.54□□□□□ -0.08
PTPRA-202ENST00000318266 ZNF316A6NFI3 1004 aaPredicted RBP14.53□□□□□ -0.08
PTPRA-202ENST00000318266 MIER1Q8N108 512 aa14.5□□□□□ -0.09
PTPRA-202ENST00000318266 PDS5BQ9NTI5 1447 aa14.48□□□□□ -0.09
PTPRA-202ENST00000318266 BAZ1BQ9UIG0 1483 aaKnown RBP14.46□□□□□ -0.09
PTPRA-202ENST00000318266 WDR62O43379 1518 aa14.41□□□□□ -0.1
PTPRA-202ENST00000318266 HNRNPUL2Q1KMD3 747 aaKnown RBP14.41□□□□□ -0.1
PTPRA-202ENST00000318266 MROH2BQ7Z745 1585 aa14.39□□□□□ -0.11
PTPRA-202ENST00000318266 KIF21AQ7Z4S6 1674 aa14.38□□□□□ -0.11
PTPRA-202ENST00000318266 UBTFP17480 764 aaKnown RBP14.38□□□□□ -0.11
PTPRA-202ENST00000318266 MRC2Q9UBG0 1479 aa14.37□□□□□ -0.11
PTPRA-202ENST00000318266 CEP162Q5TB80 1403 aa14.37□□□□□ -0.11
PTPRA-202ENST00000318266 WIZO95785 1651 aa14.33□□□□□ -0.12
PTPRA-202ENST00000318266 NESP48681 1621 aa14.31□□□□□ -0.12
PTPRA-202ENST00000318266 CCDC88BA6NC98 1476 aa14.3□□□□□ -0.12
PTPRA-202ENST00000318266 WRNQ14191 1432 aaPredicted RBP eCLIP14.29□□□□□ -0.12
PTPRA-202ENST00000318266 ABCC8Q09428 1581 aa14.29□□□□□ -0.12
PTPRA-202ENST00000318266 SOGA1O94964 1423 aa14.27□□□□□ -0.12
PTPRA-202ENST00000318266 CADPSQ9ULU8 1353 aa14.26□□□□□ -0.13
PTPRA-202ENST00000318266 RANGAP1P46060 587 aaPredicted RBP14.24□□□□□ -0.13
PTPRA-202ENST00000318266 CSRNP3Q8WYN3 585 aa14.22□□□□□ -0.13
PTPRA-202ENST00000318266 TNIKQ9UKE5 1360 aa14.21□□□□□ -0.13
PTPRA-202ENST00000318266 PRDM2Q13029 1718 aa14.2□□□□□ -0.14
PTPRA-202ENST00000318266 RUSC2Q8N2Y8 1516 aa14.19□□□□□ -0.14
PTPRA-202ENST00000318266 SUPT16HQ9Y5B9 1047 aaKnown RBP14.19□□□□□ -0.14
PTPRA-202ENST00000318266 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
PTPRA-202ENST00000318266 APLP2Q06481 763 aa14.11□□□□□ -0.15
PTPRA-202ENST00000318266 TSHZ2Q9NRE2 1034 aa14.1□□□□□ -0.15
PTPRA-202ENST00000318266 BCANQ96GW7 911 aa14.09□□□□□ -0.15
PTPRA-202ENST00000318266 CFTRP13569 1480 aa14.08□□□□□ -0.16
PTPRA-202ENST00000318266 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
PTPRA-202ENST00000318266 GOLGA3Q08378 1498 aa14.05□□□□□ -0.16
PTPRA-202ENST00000318266 FANCD2Q9BXW9 1451 aa14.05□□□□□ -0.16
PTPRA-202ENST00000318266 WDR97A6NE52 1622 aa14.05□□□□□ -0.16
PTPRA-202ENST00000318266 ANP32EQ9BTT0 268 aa14.05□□□□□ -0.16
PTPRA-202ENST00000318266 RIMBP3CA6NJZ7 1639 aa14.03□□□□□ -0.16
PTPRA-202ENST00000318266 RIMBP3BA6NNM3 1639 aa14.03□□□□□ -0.16
PTPRA-202ENST00000318266 RIMBP3Q9UFD9 1639 aa14.03□□□□□ -0.16
PTPRA-202ENST00000318266 KCNH8Q96L42 1107 aa14.02□□□□□ -0.17
PTPRA-202ENST00000318266 IFT140Q96RY7 1462 aa14.01□□□□□ -0.17
PTPRA-202ENST00000318266 CLIP1P30622 1438 aa14.01□□□□□ -0.17
PTPRA-202ENST00000318266 EEA1Q15075 1411 aa13.99□□□□□ -0.17
PTPRA-202ENST00000318266 BCL11AQ9H165 835 aa13.98□□□□□ -0.17
PTPRA-202ENST00000318266 TOP2AP11388 1531 aaKnown RBP13.98□□□□□ -0.17
PTPRA-202ENST00000318266 CLSPNQ9HAW4 1339 aa13.96□□□□□ -0.17
PTPRA-202ENST00000318266 ITGAEP38570 1179 aa13.94□□□□□ -0.18
PTPRA-202ENST00000318266 DHX57Q6P158 1386 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms