RNA–Protein interactions for RNA: ENST00000366516.5

SMYD3-201, Transcript of SET and MYND domain containing 3, humanhuman

TSL 1 (best)

Gene SMYD3, Length 1,863 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMYD3-201ENST00000366516 AEBP2Q6ZN18 517 aaPredicted RBP18.48■□□□□ 0.55
SMYD3-201ENST00000366516 CHIC1Q5VXU3 224 aa18.17■□□□□ 0.5
SMYD3-201ENST00000366516 NISCHQ9Y2I1 1504 aa17.78■□□□□ 0.44
SMYD3-201ENST00000366516 PHF23Q9BUL5 403 aaPredicted RBP15.99■□□□□ 0.15
SMYD3-201ENST00000366516 SENP3Q9H4L4 574 aaPredicted RBP15.66■□□□□ 0.1
SMYD3-201ENST00000366516 SHROOM4Q9ULL8 1493 aa15.16■□□□□ 0.02
SMYD3-201ENST00000366516 ZCCHC6Q5VYS8 1495 aaKnown RBP15.15■□□□□ 0.02
SMYD3-201ENST00000366516 HRCP23327 699 aa15.14■□□□□ 0.01
SMYD3-201ENST00000366516 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
SMYD3-201ENST00000366516 SUPT5HO00267 1087 aaKnown RBP15.08■□□□□ 0
SMYD3-201ENST00000366516 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
SMYD3-201ENST00000366516 DCAF1Q9Y4B6 1507 aa14.86□□□□□ -0.03
SMYD3-201ENST00000366516 PLPPR3Q6T4P5 718 aa14.82□□□□□ -0.04
SMYD3-201ENST00000366516 PCGF6Q9BYE7 350 aa14.76□□□□□ -0.05
SMYD3-201ENST00000366516 ABCC9O60706 1549 aa14.72□□□□□ -0.05
SMYD3-201ENST00000366516 PELP1Q8IZL8 1130 aaKnown RBP14.63□□□□□ -0.07
SMYD3-201ENST00000366516 ZEB1P37275 1124 aaPredicted RBP14.57□□□□□ -0.08
SMYD3-201ENST00000366516 TRIM26Q12899 539 aaPredicted RBP14.57□□□□□ -0.08
SMYD3-201ENST00000366516 FOXD1Q16676 465 aa14.52□□□□□ -0.09
SMYD3-201ENST00000366516 PPARGC1BQ86YN6 1023 aaKnown RBP14.5□□□□□ -0.09
SMYD3-201ENST00000366516 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
SMYD3-201ENST00000366516 LOC105371045A0A1W2PR82 267 aa14.33□□□□□ -0.11
SMYD3-201ENST00000366516 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
SMYD3-201ENST00000366516 RB1CC1Q8TDY2 1594 aa14.17□□□□□ -0.14
SMYD3-201ENST00000366516 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
SMYD3-201ENST00000366516 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
SMYD3-201ENST00000366516 MYT1Q01538 1121 aa14.13□□□□□ -0.15
SMYD3-201ENST00000366516 PPP6R1Q9UPN7 881 aa14.08□□□□□ -0.16
SMYD3-201ENST00000366516 ADRA2BP18089 450 aa14.06□□□□□ -0.16
SMYD3-201ENST00000366516 SCAF1Q9H7N4 1312 aaKnown RBP14.06□□□□□ -0.16
SMYD3-201ENST00000366516 SCRIBQ14160 1630 aa14□□□□□ -0.17
SMYD3-201ENST00000366516 CENPBP07199 599 aaPredicted RBP13.95□□□□□ -0.18
SMYD3-201ENST00000366516 ACIN1Q9UKV3 1341 aaKnown RBP13.93□□□□□ -0.18
SMYD3-201ENST00000366516 FAM9AQ8IZU1 332 aaPredicted RBP13.86□□□□□ -0.19
SMYD3-201ENST00000366516 CCER1Q8TC90 406 aaPredicted RBP13.84□□□□□ -0.19
SMYD3-201ENST00000366516 NACADO15069 1562 aa13.84□□□□□ -0.19
SMYD3-201ENST00000366516 WRNQ14191 1432 aaPredicted RBP eCLIP13.82□□□□□ -0.2
SMYD3-201ENST00000366516 BAZ1AQ9NRL2 1556 aaPredicted RBP13.79□□□□□ -0.2
SMYD3-201ENST00000366516 DIEXFQ68CQ4 756 aaKnown RBP13.78□□□□□ -0.2
SMYD3-201ENST00000366516 EIF4G1Q04637 1599 aaKnown RBP13.76□□□□□ -0.21
SMYD3-201ENST00000366516 NEUROD1Q13562 356 aa13.76□□□□□ -0.21
SMYD3-201ENST00000366516 MROH2BQ7Z745 1585 aa13.75□□□□□ -0.21
SMYD3-201ENST00000366516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.72□□□□□ -0.21
SMYD3-201ENST00000366516 PIAS4Q8N2W9 510 aaPredicted RBP13.72□□□□□ -0.21
SMYD3-201ENST00000366516 GTF3C3Q9Y5Q9 886 aa13.71□□□□□ -0.21
SMYD3-201ENST00000366516 EEA1Q15075 1411 aa13.71□□□□□ -0.22
SMYD3-201ENST00000366516 WIZO95785 1651 aa13.7□□□□□ -0.22
SMYD3-201ENST00000366516 CECR2Q9BXF3 1484 aa13.69□□□□□ -0.22
SMYD3-201ENST00000366516 PABPN1Q86U42 306 aaKnown RBP eCLIP13.67□□□□□ -0.22
SMYD3-201ENST00000366516 CEP162Q5TB80 1403 aa13.64□□□□□ -0.23
SMYD3-201ENST00000366516 TNIKQ9UKE5 1360 aa13.64□□□□□ -0.23
SMYD3-201ENST00000366516 TOP2AP11388 1531 aaKnown RBP13.62□□□□□ -0.23
SMYD3-201ENST00000366516 ZNF316A6NFI3 1004 aaPredicted RBP13.61□□□□□ -0.23
SMYD3-201ENST00000366516 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
SMYD3-201ENST00000366516 CLSPNQ9HAW4 1339 aa13.56□□□□□ -0.24
SMYD3-201ENST00000366516 GOLGA3Q08378 1498 aa13.53□□□□□ -0.24
SMYD3-201ENST00000366516 CCDC88BA6NC98 1476 aa13.51□□□□□ -0.25
SMYD3-201ENST00000366516 UNC13AQ9UPW8 1703 aa13.51□□□□□ -0.25
SMYD3-201ENST00000366516 SMARCA2P51531 1590 aa13.49□□□□□ -0.25
SMYD3-201ENST00000366516 SMARCA4P51532 1647 aa13.48□□□□□ -0.25
SMYD3-201ENST00000366516 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
SMYD3-201ENST00000366516 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.26
SMYD3-201ENST00000366516 BICRAQ9NZM4 1560 aa13.45□□□□□ -0.26
SMYD3-201ENST00000366516 CEP164Q9UPV0 1460 aa13.43□□□□□ -0.26
SMYD3-201ENST00000366516 KIF21BO75037 1637 aa13.43□□□□□ -0.26
SMYD3-201ENST00000366516 SOGA1O94964 1423 aa13.42□□□□□ -0.26
SMYD3-201ENST00000366516 UBTFP17480 764 aaKnown RBP13.4□□□□□ -0.26
SMYD3-201ENST00000366516 BAZ1BQ9UIG0 1483 aaKnown RBP13.38□□□□□ -0.27
SMYD3-201ENST00000366516 DNAJC5Q9H3Z4 198 aa13.38□□□□□ -0.27
SMYD3-201ENST00000366516 VPS8Q8N3P4 1428 aa13.35□□□□□ -0.27
SMYD3-201ENST00000366516 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
SMYD3-201ENST00000366516 MSH5O43196 834 aa13.34□□□□□ -0.27
SMYD3-201ENST00000366516 MIER1Q8N108 512 aa13.33□□□□□ -0.27
SMYD3-201ENST00000366516 TTBK1Q5TCY1 1321 aaPredicted RBP13.33□□□□□ -0.28
SMYD3-201ENST00000366516 CLIP1P30622 1438 aa13.32□□□□□ -0.28
SMYD3-201ENST00000366516 APLP2Q06481 763 aa13.32□□□□□ -0.28
SMYD3-201ENST00000366516 PEG3Q9GZU2 1588 aa13.28□□□□□ -0.28
SMYD3-201ENST00000366516 CC2D2AQ9P2K1 1620 aa13.28□□□□□ -0.28
SMYD3-201ENST00000366516 RUSC2Q8N2Y8 1516 aa13.27□□□□□ -0.29
SMYD3-201ENST00000366516 HNRNPUL2Q1KMD3 747 aaKnown RBP13.24□□□□□ -0.29
SMYD3-201ENST00000366516 SYNJ1O43426 1573 aa13.19□□□□□ -0.3
SMYD3-201ENST00000366516 ERICH3Q5RHP9 1530 aa13.18□□□□□ -0.3
SMYD3-201ENST00000366516 DHX57Q6P158 1386 aaKnown RBP13.15□□□□□ -0.3
SMYD3-201ENST00000366516 SUPT16HQ9Y5B9 1047 aaKnown RBP13.15□□□□□ -0.3
SMYD3-201ENST00000366516 CUX2O14529 1486 aa13.13□□□□□ -0.31
SMYD3-201ENST00000366516 RAPGEF2Q9Y4G8 1499 aa13.13□□□□□ -0.31
SMYD3-201ENST00000366516 RRBP1Q9P2E9 1410 aaKnown RBP13.11□□□□□ -0.31
SMYD3-201ENST00000366516 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
SMYD3-201ENST00000366516 BIVM-ERCC5R4GMW8 1640 aa13.07□□□□□ -0.32
SMYD3-201ENST00000366516 PPP4R3CPQ6ZMV5 832 aa13.06□□□□□ -0.32
SMYD3-201ENST00000366516 ANP32EQ9BTT0 268 aa13.06□□□□□ -0.32
SMYD3-201ENST00000366516 PRXQ9BXM0 1461 aa13.04□□□□□ -0.32
SMYD3-201ENST00000366516 ARAP1Q96P48 1450 aa13.03□□□□□ -0.32
SMYD3-201ENST00000366516 TSHZ2Q9NRE2 1034 aa13.01□□□□□ -0.33
SMYD3-201ENST00000366516 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
SMYD3-201ENST00000366516 CCNB3Q8WWL7 1395 aa13□□□□□ -0.33
SMYD3-201ENST00000366516 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
SMYD3-201ENST00000366516 TIMELESSQ9UNS1 1208 aa12.95□□□□□ -0.34
SMYD3-201ENST00000366516 KIF27Q86VH2 1401 aa12.94□□□□□ -0.34
SMYD3-201ENST00000366516 NEFLP07196 543 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms