Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.82■■■□□ 2.2
HTTP42858 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
HTTP42858 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.81■■■□□ 2.2
HTTP42858 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
HTTP42858 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC28.81■■■□□ 2.2
HTTP42858 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.81■■■□□ 2.2
HTTP42858 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
HTTP42858 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.81■■■□□ 2.2
HTTP42858 AC126177.7-201ENST00000547904 679 ntBASIC28.8■■■□□ 2.2
HTTP42858 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
HTTP42858 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
HTTP42858 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
HTTP42858 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.8■■■□□ 2.2
HTTP42858 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.79■■■□□ 2.2
HTTP42858 SMPD5-203ENST00000639008 1464 ntBASIC28.79■■■□□ 2.2
HTTP42858 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
HTTP42858 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
HTTP42858 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC28.79■■■□□ 2.2
HTTP42858 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
HTTP42858 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
HTTP42858 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.77■■■□□ 2.2
HTTP42858 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
HTTP42858 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.77■■■□□ 2.2
HTTP42858 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
HTTP42858 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
HTTP42858 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
HTTP42858 MIR4508-201ENST00000584178 70 ntBASIC28.76■■■□□ 2.19
HTTP42858 PVT1_1.1-201ENST00000615125 194 ntBASIC28.76■■■□□ 2.19
HTTP42858 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.75■■■□□ 2.19
HTTP42858 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
HTTP42858 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
HTTP42858 BHLHE23-202ENST00000612929 1109 ntBASIC28.74■■■□□ 2.19
HTTP42858 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC28.74■■■□□ 2.19
HTTP42858 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.74■■■□□ 2.19
HTTP42858 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
HTTP42858 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
HTTP42858 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.73■■■□□ 2.19
HTTP42858 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.73■■■□□ 2.19
HTTP42858 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
HTTP42858 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
HTTP42858 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
HTTP42858 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
HTTP42858 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
HTTP42858 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.72■■■□□ 2.19
HTTP42858 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.72■■■□□ 2.19
HTTP42858 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
HTTP42858 PRTG-204ENST00000561292 833 ntTSL 3 BASIC28.71■■■□□ 2.19
HTTP42858 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.7■■■□□ 2.18
HTTP42858 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
HTTP42858 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
HTTP42858 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
HTTP42858 YBX1P4-201ENST00000392794 808 ntBASIC28.68■■■□□ 2.18
HTTP42858 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
HTTP42858 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
HTTP42858 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
HTTP42858 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC28.68■■■□□ 2.18
HTTP42858 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
HTTP42858 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
HTTP42858 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
HTTP42858 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
HTTP42858 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
HTTP42858 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.67■■■□□ 2.18
HTTP42858 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.67■■■□□ 2.18
HTTP42858 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
HTTP42858 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
HTTP42858 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC28.66■■■□□ 2.18
HTTP42858 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
HTTP42858 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
HTTP42858 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.65■■■□□ 2.18
HTTP42858 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
HTTP42858 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
HTTP42858 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.65■■■□□ 2.18
HTTP42858 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
HTTP42858 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.65■■■□□ 2.18
HTTP42858 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
HTTP42858 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
HTTP42858 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC28.64■■■□□ 2.18
HTTP42858 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.63■■■□□ 2.17
HTTP42858 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
HTTP42858 AC074183.2-201ENST00000623112 922 ntBASIC28.63■■■□□ 2.17
HTTP42858 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.63■■■□□ 2.17
HTTP42858 AC093536.1-201ENST00000569153 554 ntBASIC28.63■■■□□ 2.17
HTTP42858 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.63■■■□□ 2.17
HTTP42858 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
HTTP42858 MIR638-201ENST00000385237 100 ntBASIC28.63■■■□□ 2.17
HTTP42858 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
HTTP42858 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
HTTP42858 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC28.62■■■□□ 2.17
HTTP42858 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
HTTP42858 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.62■■■□□ 2.17
HTTP42858 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC28.62■■■□□ 2.17
HTTP42858 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
HTTP42858 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC28.61■■■□□ 2.17
HTTP42858 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
HTTP42858 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
HTTP42858 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
HTTP42858 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC28.6■■■□□ 2.17
HTTP42858 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.6■■■□□ 2.17
HTTP42858 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
HTTP42858 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms