RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W SHC1P39000 512 aa12.78□□□□□ -0.36
SIM1YIL123W DIP2Q12220 943 aaPredicted RBP12.78□□□□□ -0.36
SIM1YIL123W FLO11P08640 1367 aa12.77□□□□□ -0.37
SIM1YIL123W HXK1P04806 485 aaKnown RBP12.77□□□□□ -0.37
SIM1YIL123W YKT6P36015 200 aaKnown RBP12.77□□□□□ -0.37
SIM1YIL123W MRPL10P36520 322 aa12.77□□□□□ -0.37
SIM1YIL123W YER130CP39959 443 aa12.77□□□□□ -0.37
SIM1YIL123W RPT6Q01939 405 aaKnown RBP12.77□□□□□ -0.37
SIM1YIL123W GET3Q12154 354 aaKnown RBP12.77□□□□□ -0.37
SIM1YIL123W ATE1P16639 503 aa12.76□□□□□ -0.37
SIM1YIL123W MIC60P36112 540 aa12.76□□□□□ -0.37
SIM1YIL123W PCI8P40512 444 aa12.76□□□□□ -0.37
SIM1YIL123W SGD1Q06132 899 aa12.76□□□□□ -0.37
SIM1YIL123W RPL22AP05749 121 aaKnown RBP12.75□□□□□ -0.37
SIM1YIL123W RGP1P16664 663 aa12.75□□□□□ -0.37
SIM1YIL123W VPS1P21576 704 aaKnown RBP12.75□□□□□ -0.37
SIM1YIL123W AFG2P32794 780 aa12.75□□□□□ -0.37
SIM1YIL123W MPE1P35728 441 aaKnown RBP12.75□□□□□ -0.37
SIM1YIL123W VPS8P39702 1274 aa12.75□□□□□ -0.37
SIM1YIL123W PCL8Q08966 492 aa12.75□□□□□ -0.37
SIM1YIL123W CEX1Q12453 761 aa12.75□□□□□ -0.37
SIM1YIL123W YJL171CP46992 396 aa12.74□□□□□ -0.37
SIM1YIL123W ARP8Q12386 881 aaKnown RBP RIP-Chip data12.74□□□□□ -0.37not detected
SIM1YIL123W RRM3P38766 723 aa12.73□□□□□ -0.37
SIM1YIL123W YDR341CQ05506 607 aaKnown RBP12.73□□□□□ -0.37
SIM1YIL123W CLF1Q12309 687 aaPredicted RBP12.73□□□□□ -0.37
SIM1YIL123W MET6P05694 767 aaKnown RBP12.72□□□□□ -0.37
SIM1YIL123W PRE8P23639 250 aa12.72□□□□□ -0.37
SIM1YIL123W URA1P28272 314 aaPredicted RBP12.72□□□□□ -0.37
SIM1YIL123W MCM2P29469 868 aa12.72□□□□□ -0.37
SIM1YIL123W MCM4P30665 933 aaKnown RBP12.72□□□□□ -0.37
SIM1YIL123W CUE3P53137 624 aaKnown RBP12.72□□□□□ -0.37
SIM1YIL123W NAF1P53919 492 aaKnown RBP12.72□□□□□ -0.37
SIM1YIL123W SSL2Q00578 843 aa12.72□□□□□ -0.37
SIM1YIL123W CRF1Q04930 467 aa12.72□□□□□ -0.37
SIM1YIL123W MCM3P24279 971 aaKnown RBP12.71□□□□□ -0.37
SIM1YIL123W RPL8BP29453 256 aaKnown RBP12.71□□□□□ -0.37
SIM1YIL123W TOM71P38825 639 aaKnown RBP12.71□□□□□ -0.37
SIM1YIL123W PES4P39684 611 aa12.71□□□□□ -0.37
SIM1YIL123W TOP1P04786 769 aa12.71□□□□□ -0.38
SIM1YIL123W SRM1P21827 482 aa12.71□□□□□ -0.38
SIM1YIL123W YGL138CP53122 345 aa12.71□□□□□ -0.38
SIM1YIL123W SKG3Q06315 1026 aa12.71□□□□□ -0.38
SIM1YIL123W NBL1Q3E7Y6 73 aa12.71□□□□□ -0.38
SIM1YIL123W GSY2P27472 705 aa12.7□□□□□ -0.38
SIM1YIL123W VMS1Q04311 632 aaKnown RBP12.7□□□□□ -0.38
SIM1YIL123W CSC1Q06538 782 aa12.7□□□□□ -0.38
SIM1YIL123W DSE3Q08729 430 aa12.7□□□□□ -0.38
SIM1YIL123W SRP54P20424 541 aaKnown RBP12.69□□□□□ -0.38
SIM1YIL123W EBP2P36049 427 aaKnown RBP12.69□□□□□ -0.38
SIM1YIL123W MTC3P53077 123 aa12.69□□□□□ -0.38
SIM1YIL123W FOL1P53848 824 aa12.69□□□□□ -0.38
SIM1YIL123W PTC5Q12511 572 aa12.69□□□□□ -0.38
SIM1YIL123W CIT1P00890 479 aa12.68□□□□□ -0.38
SIM1YIL123W MSM1P22438 575 aa12.68□□□□□ -0.38
SIM1YIL123W BMH1P29311 267 aaKnown RBP12.68□□□□□ -0.38
SIM1YIL123W SRP40P32583 406 aaPredicted RBP12.68□□□□□ -0.38
SIM1YIL123W UTP7P40055 554 aaKnown RBP12.68□□□□□ -0.38
SIM1YIL123W MDM1Q01846 1127 aa12.68□□□□□ -0.38
SIM1YIL123W AAD16Q02895 342 aa12.68□□□□□ -0.38
SIM1YIL123W TIP41Q12199 356 aa12.68□□□□□ -0.38
SIM1YIL123W NUC1P08466 329 aa12.67□□□□□ -0.38
SIM1YIL123W KIN1P13185 1064 aa12.67□□□□□ -0.38
SIM1YIL123W CHS3P29465 1165 aa12.67□□□□□ -0.38
SIM1YIL123W FYV10P40492 516 aa12.67□□□□□ -0.38
SIM1YIL123W VPS30Q02948 557 aa12.67□□□□□ -0.38
SIM1YIL123W STI1P15705 589 aaKnown RBP RIP-Chip data12.66□□□□□ -0.38not detected
SIM1YIL123W ALG1P16661 449 aa12.66□□□□□ -0.38
SIM1YIL123W ACE2P21192 770 aa12.66□□□□□ -0.38
SIM1YIL123W RTC4P53850 401 aa12.66□□□□□ -0.38
SIM1YIL123W EIS1Q05050 843 aaKnown RBP12.66□□□□□ -0.38
SIM1YIL123W MMR1Q06324 491 aa12.66□□□□□ -0.38
SIM1YIL123W ATG20Q07528 640 aa12.66□□□□□ -0.38
SIM1YIL123W YOR296WQ08748 1289 aa12.66□□□□□ -0.38
SIM1YIL123W CCT3P39077 534 aaKnown RBP12.65□□□□□ -0.38
SIM1YIL123W TFG2P41896 400 aaPredicted RBP12.65□□□□□ -0.38
SIM1YIL123W SEN54Q02825 467 aaPredicted RBP12.65□□□□□ -0.38
SIM1YIL123W GIS4Q04233 774 aa12.65□□□□□ -0.38
SIM1YIL123W YDL124WQ07551 312 aaKnown RBP12.65□□□□□ -0.38
SIM1YIL123W TUS1Q06412 1307 aa12.65□□□□□ -0.38
SIM1YIL123W MAK11P20484 414 aaKnown RBP12.64□□□□□ -0.39
SIM1YIL123W ADP1P25371 1049 aa12.64□□□□□ -0.39
SIM1YIL123W SPB4P25808 606 aaPredicted RBP12.64□□□□□ -0.39
SIM1YIL123W SES1P07284 462 aaKnown RBP12.63□□□□□ -0.39
SIM1YIL123W CST26P38226 397 aa12.63□□□□□ -0.39
SIM1YIL123W DAK2P43550 591 aa12.63□□□□□ -0.39
SIM1YIL123W RET3P53600 189 aa12.63□□□□□ -0.39
SIM1YIL123W CTR9P89105 1077 aa12.63□□□□□ -0.39
SIM1YIL123W STV1P37296 890 aa12.62□□□□□ -0.39
SIM1YIL123W NOC2P39744 710 aaKnown RBP12.62□□□□□ -0.39
SIM1YIL123W LYS14P40971 790 aa12.62□□□□□ -0.39
SIM1YIL123W SNU71P53207 620 aaKnown RBP12.62□□□□□ -0.39
SIM1YIL123W TRM44Q02648 567 aaKnown RBP12.62□□□□□ -0.39
SIM1YIL123W WAR1Q03631 944 aa12.62□□□□□ -0.39
SIM1YIL123W YBL028CP38202 106 aa12.62□□□□□ -0.39
SIM1YIL123W HIS4P00815 799 aaKnown RBP12.61□□□□□ -0.39
SIM1YIL123W PMA1P05030 918 aaKnown RBP12.61□□□□□ -0.39
SIM1YIL123W CYC8P14922 966 aa12.61□□□□□ -0.39
SIM1YIL123W THR4P16120 514 aaKnown RBP12.61□□□□□ -0.39
SIM1YIL123W STT3P39007 718 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms