Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 NSR1YGR159C 1245 nt22.5■■□□□ 1.19
SSL2Q00578 YML009W-BYML009W-B 477 nt22.3■■□□□ 1.16
SSL2Q00578 NOP1YDL014W 984 nt21.35■■□□□ 1.01
SSL2Q00578 MDJ1YFL016C 1536 nt20.55■□□□□ 0.88
SSL2Q00578 YKL036CYKL036C 393 nt19.4■□□□□ 0.7
SSL2Q00578 SRX1YKL086W 384 nt18.77■□□□□ 0.6
SSL2Q00578 YJL027CYJL027C 417 nt18.76■□□□□ 0.59
SSL2Q00578 Q0297Q0297 156 nt18.68■□□□□ 0.58
SSL2Q00578 DBP2YNL112W 1641 nt18.09■□□□□ 0.49
SSL2Q00578 YCR051WYCR051W 669 nt17.76■□□□□ 0.43
SSL2Q00578 SCS3YGL126W 1143 nt17.53■□□□□ 0.4
SSL2Q00578 YBR190WYBR190W 312 nt17.5■□□□□ 0.39
SSL2Q00578 TRN1tP(UGG)A 72 nt17.3■□□□□ 0.36
SSL2Q00578 SUF9tP(UGG)F 72 nt17.3■□□□□ 0.36
SSL2Q00578 SUF8tP(UGG)H 72 nt17.3■□□□□ 0.36
SSL2Q00578 tP(UGG)LtP(UGG)L 72 nt17.3■□□□□ 0.36
SSL2Q00578 SUF7tP(UGG)M 72 nt17.3■□□□□ 0.36
SSL2Q00578 tP(UGG)N1tP(UGG)N1 72 nt17.3■□□□□ 0.36
SSL2Q00578 tP(UGG)N2tP(UGG)N2 72 nt17.3■□□□□ 0.36
SSL2Q00578 tP(UGG)O1tP(UGG)O1 72 nt17.3■□□□□ 0.36
SSL2Q00578 SUF11tP(UGG)O2 72 nt17.3■□□□□ 0.36
SSL2Q00578 CCC1YLR220W 969 nt17.09■□□□□ 0.33
SSL2Q00578 RTC3YHR087W 336 nt17.05■□□□□ 0.32
SSL2Q00578 YOL085CYOL085C 342 nt16.9■□□□□ 0.3
SSL2Q00578 RPP1BYDL130W 321 nt16.76■□□□□ 0.27
SSL2Q00578 PKP1YIL042C 1185 nt16.75■□□□□ 0.27
SSL2Q00578 SCJ1YMR214W 1134 nt16.72■□□□□ 0.27
SSL2Q00578 RVS167YDR388W 1449 nt16.57■□□□□ 0.24
SSL2Q00578 SSA3YBL075C 1950 nt16.39■□□□□ 0.21
SSL2Q00578 PUT4YOR348C 1884 nt16.38■□□□□ 0.21
SSL2Q00578 tP(UGG)O3tP(UGG)O3 72 nt16.21■□□□□ 0.19
SSL2Q00578 PET122YER153C 765 nt16.15■□□□□ 0.18
SSL2Q00578 SHR5YOL110W 714 nt16.01■□□□□ 0.15
SSL2Q00578 ARE1YCR048W 1833 nt15.96■□□□□ 0.15
SSL2Q00578 URN1YPR152C 1398 nt15.87■□□□□ 0.13
SSL2Q00578 SAH1YER043C 1350 nt15.81■□□□□ 0.12
SSL2Q00578 DEP1YAL013W 1218 nt15.8■□□□□ 0.12
SSL2Q00578 POA1YBR022W 534 nt15.78■□□□□ 0.12
SSL2Q00578 OPI9YLR338W 858 nt15.73■□□□□ 0.11
SSL2Q00578 YHR049C-AYHR049C-A 297 nt15.68■□□□□ 0.1
SSL2Q00578 SCR1SCR1 522 nt15.64■□□□□ 0.09
SSL2Q00578 YDJ1YNL064C 1230 nt15.63■□□□□ 0.09
SSL2Q00578 RRN5YLR141W 1092 nt15.61■□□□□ 0.09
SSL2Q00578 BSC6YOL137W 1494 nt15.53■□□□□ 0.08
SSL2Q00578 ATS1YAL020C 1002 nt15.53■□□□□ 0.08
SSL2Q00578 GAR1YHR089C 618 nt15.39■□□□□ 0.05
SSL2Q00578 YNL208WYNL208W 600 nt15.39■□□□□ 0.05
SSL2Q00578 RPN10YHR200W 807 nt15.35■□□□□ 0.05
SSL2Q00578 SPT5YML010W 3192 nt15.33■□□□□ 0.04
SSL2Q00578 YER088W-BYER088W-B 147 nt15.32■□□□□ 0.04
SSL2Q00578 BUD23YCR047C 828 nt15.23■□□□□ 0.03
SSL2Q00578 PUN1YLR414C 792 nt15.18■□□□□ 0.02
SSL2Q00578 PTC2YER089C 1395 nt15.17■□□□□ 0.02
SSL2Q00578 YJR018WYJR018W 363 nt15.09■□□□□ 0.01
SSL2Q00578 RSB1YOR049C 1065 nt15.08■□□□□ 0
SSL2Q00578 YJR120WYJR120W 351 nt15.01□□□□□ -0.01
SSL2Q00578 NAB2YGL122C 1578 nt14.98□□□□□ -0.01
SSL2Q00578 SSA1YAL005C 1929 nt14.91□□□□□ -0.02
SSL2Q00578 TIR1YER011W 765 nt14.89□□□□□ -0.03
SSL2Q00578 FIS1YIL065C 468 nt14.87□□□□□ -0.03
SSL2Q00578 SSA4YER103W 1929 nt14.85□□□□□ -0.03
SSL2Q00578 SRB2YHR041C 633 nt14.76□□□□□ -0.05
SSL2Q00578 DAL1YIR027C 1383 nt14.72□□□□□ -0.05
SSL2Q00578 FPR4YLR449W 1179 nt14.65□□□□□ -0.06
SSL2Q00578 PHO4YFR034C 939 nt14.63□□□□□ -0.07
SSL2Q00578 MEP2YNL142W 1500 nt14.61□□□□□ -0.07
SSL2Q00578 INM2YDR287W 879 nt14.53□□□□□ -0.08
SSL2Q00578 RPP2BYDR382W 333 nt14.53□□□□□ -0.08
SSL2Q00578 YPS1YLR120C 1710 nt14.52□□□□□ -0.09
SSL2Q00578 PST2YDR032C 597 nt14.5□□□□□ -0.09
SSL2Q00578 DCW1YKL046C 1350 nt14.47□□□□□ -0.09
SSL2Q00578 YBL100CYBL100C 315 nt14.4□□□□□ -0.1
SSL2Q00578 BDF1YLR399C 2061 nt14.39□□□□□ -0.11
SSL2Q00578 YDR095CYDR095C 411 nt14.35□□□□□ -0.11
SSL2Q00578 YHR165W-AYHR165W-A 312 nt14.3□□□□□ -0.12
SSL2Q00578 BDH2YAL061W 1254 nt14.29□□□□□ -0.12
SSL2Q00578 FUN26YAL022C 1554 nt14.24□□□□□ -0.13
SSL2Q00578 WWM1YFL010C 636 nt14.23□□□□□ -0.13
SSL2Q00578 PTP1YDL230W 1008 nt14.19□□□□□ -0.14
SSL2Q00578 EMI2YDR516C 1503 nt14.17□□□□□ -0.14
SSL2Q00578 CAC2YML102W 1407 nt14.16□□□□□ -0.14
SSL2Q00578 TAT1YBR069C 1860 nt14.16□□□□□ -0.14
SSL2Q00578 YBR220CYBR220C 1683 nt14.11□□□□□ -0.15
SSL2Q00578 SHU1YHL006C 453 nt14.05□□□□□ -0.16
SSL2Q00578 YDL221WYDL221W 552 nt14.03□□□□□ -0.16
SSL2Q00578 TRM9YML014W 840 nt14.03□□□□□ -0.16
SSL2Q00578 RPP2AYOL039W 321 nt14.03□□□□□ -0.16
SSL2Q00578 YAL037C-BYAL037C-B 975 nt14□□□□□ -0.17
SSL2Q00578 ALF1YNL148C 765 nt14□□□□□ -0.17
SSL2Q00578 CCT6YDR188W 1641 nt14□□□□□ -0.17
SSL2Q00578 LSM3YLR438C-A 270 nt13.98□□□□□ -0.17
SSL2Q00578 SDH1YKL148C 1923 nt13.95□□□□□ -0.18
SSL2Q00578 IRC15YPL017C 1500 nt13.95□□□□□ -0.18
SSL2Q00578 SIS1YNL007C 1059 nt13.94□□□□□ -0.18
SSL2Q00578 HOM6YJR139C 1080 nt13.92□□□□□ -0.18
SSL2Q00578 YMR090WYMR090W 684 nt13.9□□□□□ -0.18
SSL2Q00578 YFL021C-AYFL021C-A 855 nt13.89□□□□□ -0.19
SSL2Q00578 MNP1YGL068W 585 nt13.85□□□□□ -0.19
SSL2Q00578 YGR021WYGR021W 873 nt13.83□□□□□ -0.2
SSL2Q00578 GFD2YCL036W 1701 nt13.83□□□□□ -0.2
Retrieved 100 of 7,029 protein–RNA pairs in 28.3 ms