RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W SGS1P35187 1447 aa20.27■□□□□ 0.84
SIM1YIL123W INO80P53115 1489 aa19.93■□□□□ 0.78
SIM1YIL123W TCB3Q03640 1545 aaKnown RBP19.68■□□□□ 0.74
SIM1YIL123W TY1B-DR4Q07793 1604 aa19.4■□□□□ 0.7
SIM1YIL123W MON2P48563 1636 aaPredicted RBP19.4■□□□□ 0.7
SIM1YIL123W SPA2P23201 1466 aaKnown RBP19.37■□□□□ 0.69
SIM1YIL123W SSN2P38931 1420 aa19.33■□□□□ 0.68
SIM1YIL123W HSL1P34244 1518 aa19.03■□□□□ 0.64
SIM1YIL123W SWR1Q05471 1514 aa19.01■□□□□ 0.63
SIM1YIL123W SPT6P23615 1451 aaKnown RBP18.97■□□□□ 0.63
SIM1YIL123W DRS1P32892 752 aaKnown RBP18.72■□□□□ 0.59
SIM1YIL123W HIR3P47171 1648 aa18.69■□□□□ 0.58
SIM1YIL123W XRN1P22147 1528 aaKnown RBP18.54■□□□□ 0.56
SIM1YIL123W DNA2P38859 1522 aa18.46■□□□□ 0.55
SIM1YIL123W KOG1P38873 1557 aa18.39■□□□□ 0.53
SIM1YIL123W REV3P14284 1504 aa18.28■□□□□ 0.52
SIM1YIL123W SIN3P22579 1536 aa18.19■□□□□ 0.5
SIM1YIL123W THO2P53552 1597 aaKnown RBP18.1■□□□□ 0.49
SIM1YIL123W BUD4P47136 1447 aa18.08■□□□□ 0.48
SIM1YIL123W SSK2P53599 1579 aa18.05■□□□□ 0.48
SIM1YIL123W ECM5Q03214 1411 aa18.03■□□□□ 0.48
SIM1YIL123W TAF2P23255 1407 aa18■□□□□ 0.47
SIM1YIL123W ATG2P53855 1592 aa17.86■□□□□ 0.45
SIM1YIL123W ESP1Q03018 1630 aa17.86■□□□□ 0.45
SIM1YIL123W MYO2P19524 1574 aaKnown RBP17.8■□□□□ 0.44
SIM1YIL123W SKI3P17883 1432 aaKnown RBP17.76■□□□□ 0.43
SIM1YIL123W PEP1P32319 1579 aa17.76■□□□□ 0.43
SIM1YIL123W MDS3P53094 1487 aa17.75■□□□□ 0.43
SIM1YIL123W YPK9Q12697 1472 aa17.68■□□□□ 0.42
SIM1YIL123W POL1P13382 1468 aa17.57■□□□□ 0.4
SIM1YIL123W SCC2Q04002 1493 aa17.5■□□□□ 0.39
SIM1YIL123W RPO31P04051 1460 aa17.45■□□□□ 0.38
SIM1YIL123W STU1P38198 1513 aa17.44■□□□□ 0.38
SIM1YIL123W CHD1P32657 1468 aa17.4■□□□□ 0.38
SIM1YIL123W UFD4P33202 1483 aa17.37■□□□□ 0.37
SIM1YIL123W YTA7P40340 1379 aa17.35■□□□□ 0.37
SIM1YIL123W RKR1Q04781 1562 aa17.33■□□□□ 0.37
SIM1YIL123W YOR1P53049 1477 aa17.32■□□□□ 0.36
SIM1YIL123W TOP2P06786 1428 aaKnown RBP17.32■□□□□ 0.36
SIM1YIL123W YCF1P39109 1515 aaKnown RBP17.28■□□□□ 0.36
SIM1YIL123W MMS22Q06164 1454 aa17.28■□□□□ 0.36
SIM1YIL123W SMC4Q12267 1418 aa17.23■□□□□ 0.35
SIM1YIL123W BPT1P14772 1559 aa17.2■□□□□ 0.34
SIM1YIL123W MYO4P32492 1471 aa17.17■□□□□ 0.34
SIM1YIL123W TY2B-LR1P0C2J3 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-FP0CX63 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-GR2P0CX64 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-CP25384 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-DR2Q03494 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY1B-DR1Q03855 1755 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-DR3Q07791 1770 aaKnown RBP17.14■□□□□ 0.33
SIM1YIL123W TY2B-OR1Q12113 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-DR1Q12472 1770 aa17.14■□□□□ 0.33
SIM1YIL123W TY2B-OR2Q12501 1770 aa17.14■□□□□ 0.33
SIM1YIL123W RSE1Q04693 1361 aaKnown RBP17.05■□□□□ 0.32
SIM1YIL123W TY1B-DR3Q99231 1755 aa17.04■□□□□ 0.32
SIM1YIL123W TY2B-BQ12491 1770 aa16.99■□□□□ 0.31
SIM1YIL123W SAS10Q12136 610 aaPredicted RBP16.98■□□□□ 0.31
SIM1YIL123W TY1B-BRQ12193 1756 aa16.91■□□□□ 0.3
SIM1YIL123W TY1B-GR3Q12316 1755 aa16.91■□□□□ 0.3
SIM1YIL123W TY1B-ORQ92393 1755 aa16.91■□□□□ 0.3
SIM1YIL123W SPP41P38904 1435 aa16.91■□□□□ 0.3
SIM1YIL123W SNQ2P32568 1501 aaKnown RBP16.89■□□□□ 0.29
SIM1YIL123W TY1B-HO13535 1793 aa16.88■□□□□ 0.29
SIM1YIL123W CDC25P04821 1589 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-DR5P0C2I2 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-DR6P0C2I3 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-LR2P0C2I5 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-LR3P0C2I6 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TY1B-PR1P0C2I9 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TY1B-PR2P0C2J0 1756 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-PR3P0C2J1 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TY1B-JR1P47098 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-ML2Q03434 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TY1B-ER1Q03612 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-ML1Q04711 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TY1B-GR2Q12269 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-OLQ12273 1755 aa16.88■□□□□ 0.29
SIM1YIL123W TY1B-PLQ12414 1755 aaKnown RBP16.88■□□□□ 0.29
SIM1YIL123W TAF7Q05021 590 aa16.87■□□□□ 0.29
SIM1YIL123W RQC2Q12532 1038 aaKnown RBP16.86■□□□□ 0.29
SIM1YIL123W STH1P32597 1359 aa16.84■□□□□ 0.29
SIM1YIL123W PAN1P32521 1480 aa16.84■□□□□ 0.29
SIM1YIL123W TSC11P40061 1430 aa16.8■□□□□ 0.28
SIM1YIL123W VTH1P40438 1549 aa16.75■□□□□ 0.27
SIM1YIL123W VTH2P40890 1549 aa16.75■□□□□ 0.27
SIM1YIL123W MTC1P47018 478 aaKnown RBP16.7■□□□□ 0.26
SIM1YIL123W PDR15Q04182 1529 aaKnown RBP16.67■□□□□ 0.26
SIM1YIL123W MLP2P40457 1679 aa16.67■□□□□ 0.26
SIM1YIL123W SNT2P53127 1403 aa16.65■□□□□ 0.26
SIM1YIL123W TRM732Q03496 1420 aa16.64■□□□□ 0.25
SIM1YIL123W DNF1P32660 1571 aa16.63■□□□□ 0.25
SIM1YIL123W ULS1Q08562 1619 aa16.62■□□□□ 0.25
SIM1YIL123W ESC1Q03661 1658 aaKnown RBP16.61■□□□□ 0.25
SIM1YIL123W TY1B-JR2P47100 1755 aaKnown RBP16.6■□□□□ 0.25
SIM1YIL123W TY1B-ER2Q03619 1755 aa16.6■□□□□ 0.25
SIM1YIL123W TY1B-MR1Q04214 1755 aa16.6■□□□□ 0.25
SIM1YIL123W TY1B-MR2Q04670 1755 aaKnown RBP16.6■□□□□ 0.25
SIM1YIL123W TY1B-LR1Q12088 1755 aaKnown RBP16.6■□□□□ 0.25
SIM1YIL123W TY1B-NL1Q12112 1755 aa16.6■□□□□ 0.25
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms