Protein–RNA interactions for Protein: P53600

RET3, Coatomer subunit zeta, yeastyeast

Predictions only

Length 189 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RET3P53600 YML009W-BYML009W-B 477 nt23.16■■□□□ 1.3
RET3P53600 NSR1YGR159C 1245 nt22.91■■□□□ 1.26
RET3P53600 NOP1YDL014W 984 nt22.47■■□□□ 1.19
RET3P53600 YKL036CYKL036C 393 nt20.77■□□□□ 0.92
RET3P53600 MDJ1YFL016C 1536 nt20.38■□□□□ 0.85
RET3P53600 Q0297Q0297 156 nt19.65■□□□□ 0.74
RET3P53600 SRX1YKL086W 384 nt19.62■□□□□ 0.73
RET3P53600 YJL027CYJL027C 417 nt19.43■□□□□ 0.7
RET3P53600 SCS3YGL126W 1143 nt18.92■□□□□ 0.62
RET3P53600 YCR051WYCR051W 669 nt18.7■□□□□ 0.58
RET3P53600 YOL085CYOL085C 342 nt18■□□□□ 0.47
RET3P53600 DBP2YNL112W 1641 nt18■□□□□ 0.47
RET3P53600 PKP1YIL042C 1185 nt17.79■□□□□ 0.44
RET3P53600 TRN1tP(UGG)A 72 nt17.72■□□□□ 0.43
RET3P53600 SUF9tP(UGG)F 72 nt17.72■□□□□ 0.43
RET3P53600 SUF8tP(UGG)H 72 nt17.72■□□□□ 0.43
RET3P53600 tP(UGG)LtP(UGG)L 72 nt17.72■□□□□ 0.43
RET3P53600 SUF7tP(UGG)M 72 nt17.72■□□□□ 0.43
RET3P53600 tP(UGG)N1tP(UGG)N1 72 nt17.72■□□□□ 0.43
RET3P53600 tP(UGG)N2tP(UGG)N2 72 nt17.72■□□□□ 0.43
RET3P53600 tP(UGG)O1tP(UGG)O1 72 nt17.72■□□□□ 0.43
RET3P53600 SUF11tP(UGG)O2 72 nt17.72■□□□□ 0.43
RET3P53600 RPP1BYDL130W 321 nt17.66■□□□□ 0.42
RET3P53600 CCC1YLR220W 969 nt17.65■□□□□ 0.42
RET3P53600 YBR190WYBR190W 312 nt17.31■□□□□ 0.36
RET3P53600 RTC3YHR087W 336 nt17.02■□□□□ 0.32
RET3P53600 RVS167YDR388W 1449 nt16.96■□□□□ 0.3
RET3P53600 ATS1YAL020C 1002 nt16.92■□□□□ 0.3
RET3P53600 PET122YER153C 765 nt16.9■□□□□ 0.3
RET3P53600 SCJ1YMR214W 1134 nt16.87■□□□□ 0.29
RET3P53600 tP(UGG)O3tP(UGG)O3 72 nt16.8■□□□□ 0.28
RET3P53600 SCR1SCR1 522 nt16.72■□□□□ 0.27
RET3P53600 RRN5YLR141W 1092 nt16.42■□□□□ 0.22
RET3P53600 SHR5YOL110W 714 nt16.34■□□□□ 0.21
RET3P53600 YDJ1YNL064C 1230 nt16.2■□□□□ 0.18
RET3P53600 RSB1YOR049C 1065 nt16.11■□□□□ 0.17
RET3P53600 YER088W-BYER088W-B 147 nt16.08■□□□□ 0.16
RET3P53600 DEP1YAL013W 1218 nt15.97■□□□□ 0.15
RET3P53600 GAR1YHR089C 618 nt15.93■□□□□ 0.14
RET3P53600 URN1YPR152C 1398 nt15.91■□□□□ 0.14
RET3P53600 PUT4YOR348C 1884 nt15.7■□□□□ 0.1
RET3P53600 PST2YDR032C 597 nt15.65■□□□□ 0.1
RET3P53600 RPN10YHR200W 807 nt15.65■□□□□ 0.1
RET3P53600 YNL208WYNL208W 600 nt15.64■□□□□ 0.09
RET3P53600 OPI9YLR338W 858 nt15.62■□□□□ 0.09
RET3P53600 SAH1YER043C 1350 nt15.57■□□□□ 0.08
RET3P53600 ARE1YCR048W 1833 nt15.44■□□□□ 0.06
RET3P53600 TIR1YER011W 765 nt15.36■□□□□ 0.05
RET3P53600 YHR049C-AYHR049C-A 297 nt15.27■□□□□ 0.04
RET3P53600 POA1YBR022W 534 nt15.27■□□□□ 0.04
RET3P53600 PUN1YLR414C 792 nt15.18■□□□□ 0.02
RET3P53600 SSA1YAL005C 1929 nt15.17■□□□□ 0.02
RET3P53600 YJR018WYJR018W 363 nt15.16■□□□□ 0.02
RET3P53600 YKL097CYKL097C 411 nt15.07■□□□□ 0
RET3P53600 SHU1YHL006C 453 nt15.04■□□□□ -0
RET3P53600 PTC2YER089C 1395 nt15.03■□□□□ -0
RET3P53600 BUD23YCR047C 828 nt14.97□□□□□ -0.01
RET3P53600 SRB2YHR041C 633 nt14.93□□□□□ -0.02
RET3P53600 YJR120WYJR120W 351 nt14.91□□□□□ -0.02
RET3P53600 BSC6YOL137W 1494 nt14.9□□□□□ -0.02
RET3P53600 RPP2BYDR382W 333 nt14.87□□□□□ -0.03
RET3P53600 YAL037C-BYAL037C-B 975 nt14.86□□□□□ -0.03
RET3P53600 NAB2YGL122C 1578 nt14.8□□□□□ -0.04
RET3P53600 WWM1YFL010C 636 nt14.71□□□□□ -0.05
RET3P53600 FPR4YLR449W 1179 nt14.67□□□□□ -0.06
RET3P53600 DAL1YIR027C 1383 nt14.6□□□□□ -0.07
RET3P53600 INM2YDR287W 879 nt14.59□□□□□ -0.07
RET3P53600 YGR021WYGR021W 873 nt14.58□□□□□ -0.08
RET3P53600 FIS1YIL065C 468 nt14.58□□□□□ -0.08
RET3P53600 BDH2YAL061W 1254 nt14.56□□□□□ -0.08
RET3P53600 HOM6YJR139C 1080 nt14.54□□□□□ -0.08
RET3P53600 MNP1YGL068W 585 nt14.53□□□□□ -0.08
RET3P53600 YBL100CYBL100C 315 nt14.5□□□□□ -0.09
RET3P53600 PHO4YFR034C 939 nt14.49□□□□□ -0.09
RET3P53600 SSA3YBL075C 1950 nt14.48□□□□□ -0.09
RET3P53600 YOR139CYOR139C 393 nt14.46□□□□□ -0.09
RET3P53600 YFL021C-AYFL021C-A 855 nt14.41□□□□□ -0.1
RET3P53600 NPL3YDR432W 1245 nt14.36□□□□□ -0.11
RET3P53600 LSM3YLR438C-A 270 nt14.35□□□□□ -0.11
RET3P53600 RKM5YLR137W 1104 nt14.34□□□□□ -0.11
RET3P53600 FUN26YAL022C 1554 nt14.32□□□□□ -0.12
RET3P53600 TRM9YML014W 840 nt14.32□□□□□ -0.12
RET3P53600 YOL037CYOL037C 354 nt14.22□□□□□ -0.13
RET3P53600 YPS1YLR120C 1710 nt14.16□□□□□ -0.14
RET3P53600 ALF1YNL148C 765 nt14.13□□□□□ -0.15
RET3P53600 CCT6YDR188W 1641 nt14.12□□□□□ -0.15
RET3P53600 SPT5YML010W 3192 nt14.07□□□□□ -0.16
RET3P53600 YDR095CYDR095C 411 nt14.07□□□□□ -0.16
RET3P53600 YHR165W-AYHR165W-A 312 nt14.06□□□□□ -0.16
RET3P53600 SUF2tP(AGG)C 72 nt14.01□□□□□ -0.17
RET3P53600 SUF10tP(AGG)N 72 nt14.01□□□□□ -0.17
RET3P53600 MEP2YNL142W 1500 nt13.95□□□□□ -0.18
RET3P53600 YLR281CYLR281C 468 nt13.92□□□□□ -0.18
RET3P53600 tM(CAU)CtM(CAU)C 72 nt13.9□□□□□ -0.18
RET3P53600 IMT4tM(CAU)E 72 nt13.9□□□□□ -0.18
RET3P53600 IMT3tM(CAU)J3 72 nt13.9□□□□□ -0.18
RET3P53600 IMT1tM(CAU)O1 72 nt13.9□□□□□ -0.18
RET3P53600 IMT2tM(CAU)P 72 nt13.9□□□□□ -0.18
RET3P53600 WHI5YOR083W 888 nt13.9□□□□□ -0.18
RET3P53600 SIS1YNL007C 1059 nt13.86□□□□□ -0.19
Retrieved 100 of 7,029 protein–RNA pairs in 42.4 ms