Protein–RNA interactions for Protein: P39000

SHC1, Protein SHC1, yeastyeast

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHC1P39000 YML009W-BYML009W-B 477 nt24.81■■□□□ 1.56
SHC1P39000 NOP1YDL014W 984 nt24.39■■□□□ 1.49
SHC1P39000 NSR1YGR159C 1245 nt24.03■■□□□ 1.44
SHC1P39000 YKL036CYKL036C 393 nt23.12■■□□□ 1.29
SHC1P39000 YJL027CYJL027C 417 nt21.73■■□□□ 1.07
SHC1P39000 Q0297Q0297 156 nt21.52■■□□□ 1.04
SHC1P39000 SCS3YGL126W 1143 nt21.36■■□□□ 1.01
SHC1P39000 SRX1YKL086W 384 nt21.28■■□□□ 1
SHC1P39000 MDJ1YFL016C 1536 nt20.73■□□□□ 0.91
SHC1P39000 YCR051WYCR051W 669 nt20.3■□□□□ 0.84
SHC1P39000 YOL085CYOL085C 342 nt19.99■□□□□ 0.79
SHC1P39000 SCJ1YMR214W 1134 nt19.74■□□□□ 0.75
SHC1P39000 PKP1YIL042C 1185 nt19.66■□□□□ 0.74
SHC1P39000 RPP1BYDL130W 321 nt19.34■□□□□ 0.69
SHC1P39000 ATS1YAL020C 1002 nt19.3■□□□□ 0.68
SHC1P39000 TRN1tP(UGG)A 72 nt18.82■□□□□ 0.6
SHC1P39000 SUF9tP(UGG)F 72 nt18.82■□□□□ 0.6
SHC1P39000 SUF8tP(UGG)H 72 nt18.82■□□□□ 0.6
SHC1P39000 tP(UGG)LtP(UGG)L 72 nt18.82■□□□□ 0.6
SHC1P39000 SUF7tP(UGG)M 72 nt18.82■□□□□ 0.6
SHC1P39000 tP(UGG)N1tP(UGG)N1 72 nt18.82■□□□□ 0.6
SHC1P39000 tP(UGG)N2tP(UGG)N2 72 nt18.82■□□□□ 0.6
SHC1P39000 tP(UGG)O1tP(UGG)O1 72 nt18.82■□□□□ 0.6
SHC1P39000 SUF11tP(UGG)O2 72 nt18.82■□□□□ 0.6
SHC1P39000 CCC1YLR220W 969 nt18.74■□□□□ 0.59
SHC1P39000 DBP2YNL112W 1641 nt18.55■□□□□ 0.56
SHC1P39000 SCR1SCR1 522 nt18.42■□□□□ 0.54
SHC1P39000 PET122YER153C 765 nt18.39■□□□□ 0.53
SHC1P39000 tP(UGG)O3tP(UGG)O3 72 nt18.06■□□□□ 0.48
SHC1P39000 RTC3YHR087W 336 nt18.01■□□□□ 0.47
SHC1P39000 RRN5YLR141W 1092 nt17.96■□□□□ 0.47
SHC1P39000 RSB1YOR049C 1065 nt17.81■□□□□ 0.44
SHC1P39000 PST2YDR032C 597 nt17.75■□□□□ 0.43
SHC1P39000 RVS167YDR388W 1449 nt17.68■□□□□ 0.42
SHC1P39000 YER088W-BYER088W-B 147 nt17.59■□□□□ 0.41
SHC1P39000 YBR190WYBR190W 312 nt17.48■□□□□ 0.39
SHC1P39000 YDJ1YNL064C 1230 nt17.45■□□□□ 0.38
SHC1P39000 YKL097CYKL097C 411 nt17.44■□□□□ 0.38
SHC1P39000 SHR5YOL110W 714 nt17.19■□□□□ 0.34
SHC1P39000 GAR1YHR089C 618 nt17■□□□□ 0.31
SHC1P39000 SHU1YHL006C 453 nt16.88■□□□□ 0.29
SHC1P39000 YOR139CYOR139C 393 nt16.58■□□□□ 0.24
SHC1P39000 DEP1YAL013W 1218 nt16.53■□□□□ 0.24
SHC1P39000 YAL037C-BYAL037C-B 975 nt16.46■□□□□ 0.23
SHC1P39000 TIR1YER011W 765 nt16.38■□□□□ 0.21
SHC1P39000 NPL3YDR432W 1245 nt16.34■□□□□ 0.21
SHC1P39000 URN1YPR152C 1398 nt16.31■□□□□ 0.2
SHC1P39000 YNL208WYNL208W 600 nt16.31■□□□□ 0.2
SHC1P39000 RPN10YHR200W 807 nt16.23■□□□□ 0.19
SHC1P39000 SSA1YAL005C 1929 nt16.02■□□□□ 0.16
SHC1P39000 OPI9YLR338W 858 nt15.91■□□□□ 0.14
SHC1P39000 MNP1YGL068W 585 nt15.89■□□□□ 0.13
SHC1P39000 tM(CAU)CtM(CAU)C 72 nt15.89■□□□□ 0.13
SHC1P39000 IMT4tM(CAU)E 72 nt15.89■□□□□ 0.13
SHC1P39000 IMT3tM(CAU)J3 72 nt15.89■□□□□ 0.13
SHC1P39000 IMT1tM(CAU)O1 72 nt15.89■□□□□ 0.13
SHC1P39000 IMT2tM(CAU)P 72 nt15.89■□□□□ 0.13
SHC1P39000 YGR021WYGR021W 873 nt15.88■□□□□ 0.13
SHC1P39000 YOL037CYOL037C 354 nt15.87■□□□□ 0.13
SHC1P39000 SRB2YHR041C 633 nt15.86■□□□□ 0.13
SHC1P39000 HOM6YJR139C 1080 nt15.84■□□□□ 0.13
SHC1P39000 WWM1YFL010C 636 nt15.78■□□□□ 0.12
SHC1P39000 SAH1YER043C 1350 nt15.66■□□□□ 0.1
SHC1P39000 RKM5YLR137W 1104 nt15.62■□□□□ 0.09
SHC1P39000 YJR018WYJR018W 363 nt15.6■□□□□ 0.09
SHC1P39000 PUS2YGL063W 1113 nt15.57■□□□□ 0.08
SHC1P39000 MOT3YMR070W 1473 nt15.55■□□□□ 0.08
SHC1P39000 BSC6YOL137W 1494 nt15.52■□□□□ 0.07
SHC1P39000 RPP2BYDR382W 333 nt15.5■□□□□ 0.07
SHC1P39000 YFL021C-AYFL021C-A 855 nt15.49■□□□□ 0.07
SHC1P39000 PUN1YLR414C 792 nt15.47■□□□□ 0.07
SHC1P39000 YLR281CYLR281C 468 nt15.46■□□□□ 0.07
SHC1P39000 YJR120WYJR120W 351 nt15.44■□□□□ 0.06
SHC1P39000 SSA3YBL075C 1950 nt15.35■□□□□ 0.05
SHC1P39000 WHI5YOR083W 888 nt15.33■□□□□ 0.04
SHC1P39000 PUT4YOR348C 1884 nt15.31■□□□□ 0.04
SHC1P39000 BDH2YAL061W 1254 nt15.26■□□□□ 0.03
SHC1P39000 ARE1YCR048W 1833 nt15.26■□□□□ 0.03
SHC1P39000 LSM3YLR438C-A 270 nt15.19■□□□□ 0.02
SHC1P39000 FMP45YDL222C 930 nt15.18■□□□□ 0.02
SHC1P39000 PTC2YER089C 1395 nt15.18■□□□□ 0.02
SHC1P39000 MRPL8YJL063C 717 nt15.15■□□□□ 0.02
SHC1P39000 YHR049C-AYHR049C-A 297 nt15.1■□□□□ 0.01
SHC1P39000 DSK2YMR276W 1122 nt15.07■□□□□ 0
SHC1P39000 YPR011CYPR011C 981 nt15.07■□□□□ 0
SHC1P39000 YCH1YGR203W 447 nt15.05■□□□□ -0
SHC1P39000 YLR236CYLR236C 324 nt14.99□□□□□ -0.01
SHC1P39000 INM2YDR287W 879 nt14.96□□□□□ -0.01
SHC1P39000 IMP2'YIL154C 1041 nt14.96□□□□□ -0.01
SHC1P39000 POA1YBR022W 534 nt14.96□□□□□ -0.01
SHC1P39000 ADO1YJR105W 1023 nt14.93□□□□□ -0.02
SHC1P39000 YBL100CYBL100C 315 nt14.93□□□□□ -0.02
SHC1P39000 UBX6YJL048C 1191 nt14.91□□□□□ -0.02
SHC1P39000 TRM9YML014W 840 nt14.9□□□□□ -0.02
SHC1P39000 FPR4YLR449W 1179 nt14.87□□□□□ -0.03
SHC1P39000 NAB2YGL122C 1578 nt14.86□□□□□ -0.03
SHC1P39000 BUD23YCR047C 828 nt14.86□□□□□ -0.03
SHC1P39000 YLR154C-GYLR154C-G 150 nt14.85□□□□□ -0.03
SHC1P39000 YEL076C-AYEL076C-A 651 nt14.81□□□□□ -0.04
SHC1P39000 YEL076CYEL076C 651 nt14.81□□□□□ -0.04
Retrieved 100 of 7,029 protein–RNA pairs in 16.6 ms