Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.59■■■□□ 2.97
CHD8Q9HCK8 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.24■■■□□ 2.91
CHD8Q9HCK8 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC32.66■■■□□ 2.82
CHD8Q9HCK8 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CHD8Q9HCK8 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CHD8Q9HCK8 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
CHD8Q9HCK8 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHD8Q9HCK8 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.94■■■□□ 2.7
CHD8Q9HCK8 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
CHD8Q9HCK8 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
CHD8Q9HCK8 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CHD8Q9HCK8 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.63■■■□□ 2.65
CHD8Q9HCK8 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CHD8Q9HCK8 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CHD8Q9HCK8 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.3■■■□□ 2.6
CHD8Q9HCK8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CHD8Q9HCK8 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
CHD8Q9HCK8 AC006077.2-201ENST00000623591 457 ntBASIC31.03■■■□□ 2.56
CHD8Q9HCK8 ZNRF2P1-201ENST00000441407 443 ntBASIC30.95■■■□□ 2.54
CHD8Q9HCK8 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
CHD8Q9HCK8 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
CHD8Q9HCK8 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.91■■■□□ 2.54
CHD8Q9HCK8 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CHD8Q9HCK8 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CHD8Q9HCK8 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
CHD8Q9HCK8 AL356512.1-201ENST00000607453 1739 ntBASIC30.8■■■□□ 2.52
CHD8Q9HCK8 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CHD8Q9HCK8 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.72■■■□□ 2.51
CHD8Q9HCK8 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.64■■■□□ 2.5
CHD8Q9HCK8 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.47
CHD8Q9HCK8 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CHD8Q9HCK8 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
CHD8Q9HCK8 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.33■■■□□ 2.45
CHD8Q9HCK8 AP002365.1-201ENST00000603448 772 ntBASIC30.16■■■□□ 2.42
CHD8Q9HCK8 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.11■■■□□ 2.41
CHD8Q9HCK8 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.11■■■□□ 2.41
CHD8Q9HCK8 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC30.08■■■□□ 2.41
CHD8Q9HCK8 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.08■■■□□ 2.41
CHD8Q9HCK8 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CHD8Q9HCK8 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
CHD8Q9HCK8 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC29.95■■■□□ 2.38
CHD8Q9HCK8 AC015813.7-201ENST00000623294 581 ntBASIC29.95■■■□□ 2.38
CHD8Q9HCK8 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.92■■■□□ 2.38
CHD8Q9HCK8 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.92■■■□□ 2.38
CHD8Q9HCK8 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
CHD8Q9HCK8 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.78■■■□□ 2.36
CHD8Q9HCK8 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CHD8Q9HCK8 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.73■■■□□ 2.35
CHD8Q9HCK8 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CHD8Q9HCK8 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CHD8Q9HCK8 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.57■■■□□ 2.32
CHD8Q9HCK8 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
CHD8Q9HCK8 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
CHD8Q9HCK8 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.51■■■□□ 2.31
CHD8Q9HCK8 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.51■■■□□ 2.31
CHD8Q9HCK8 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.46■■■□□ 2.31
CHD8Q9HCK8 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.31
CHD8Q9HCK8 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.41■■■□□ 2.3
CHD8Q9HCK8 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CHD8Q9HCK8 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CHD8Q9HCK8 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.33■■■□□ 2.28
CHD8Q9HCK8 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
CHD8Q9HCK8 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.26■■■□□ 2.28
CHD8Q9HCK8 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CHD8Q9HCK8 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CHD8Q9HCK8 RPS2P35-201ENST00000443417 897 ntBASIC29.2■■■□□ 2.27
CHD8Q9HCK8 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.19■■■□□ 2.26
CHD8Q9HCK8 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.17■■■□□ 2.26
CHD8Q9HCK8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.17■■■□□ 2.26
CHD8Q9HCK8 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.16■■■□□ 2.26
CHD8Q9HCK8 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.15■■■□□ 2.26
CHD8Q9HCK8 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
CHD8Q9HCK8 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CHD8Q9HCK8 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.12■■■□□ 2.25
CHD8Q9HCK8 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CHD8Q9HCK8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.09■■■□□ 2.25
CHD8Q9HCK8 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.08■■■□□ 2.25
CHD8Q9HCK8 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CHD8Q9HCK8 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CHD8Q9HCK8 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.04■■■□□ 2.24
CHD8Q9HCK8 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
CHD8Q9HCK8 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
CHD8Q9HCK8 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
CHD8Q9HCK8 DYNLL1-208ENST00000550178 581 ntBASIC28.98■■■□□ 2.23
CHD8Q9HCK8 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
CHD8Q9HCK8 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
CHD8Q9HCK8 RARRES2P7-201ENST00000567349 469 ntBASIC28.92■■■□□ 2.22
CHD8Q9HCK8 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.89■■■□□ 2.22
CHD8Q9HCK8 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.85■■■□□ 2.21
CHD8Q9HCK8 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CHD8Q9HCK8 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CHD8Q9HCK8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC28.75■■■□□ 2.19
CHD8Q9HCK8 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CHD8Q9HCK8 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.72■■■□□ 2.19
CHD8Q9HCK8 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CHD8Q9HCK8 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.69■■■□□ 2.18
CHD8Q9HCK8 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.69■■■□□ 2.18
CHD8Q9HCK8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC28.67■■■□□ 2.18
CHD8Q9HCK8 AC136428.2-201ENST00000563187 214 ntBASIC28.63■■■□□ 2.17
CHD8Q9HCK8 SUZ12P1-203ENST00000578195 985 ntBASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms