RNA–Protein interactions for RNA: ENST00000527920.5

SSSCA1-205, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 806 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-205ENST00000527920 NISCHQ9Y2I1 1504 aa81.38■■■■■ 10.62
SSSCA1-205ENST00000527920 CCDC180Q9P1Z9 1646 aa72.62■■■■■ 9.22
SSSCA1-205ENST00000527920 ABCC9O60706 1549 aa71.51■■■■■ 9.04
SSSCA1-205ENST00000527920 RB1CC1Q8TDY2 1594 aa68.63■■■■■ 8.58
SSSCA1-205ENST00000527920 NACADO15069 1562 aa68.45■■■■■ 8.55
SSSCA1-205ENST00000527920 DCAF8L2P0C7V8 631 aa68.03■■■■■ 8.48
SSSCA1-205ENST00000527920 MYO15BQ96JP2 1530 aa67.96■■■■■ 8.47
SSSCA1-205ENST00000527920 ZCCHC6Q5VYS8 1495 aaKnown RBP67.69■■■■■ 8.43
SSSCA1-205ENST00000527920 DCAF1Q9Y4B6 1507 aa67.41■■■■■ 8.38
SSSCA1-205ENST00000527920 UNC13AQ9UPW8 1703 aa66.91■■■■■ 8.3
SSSCA1-205ENST00000527920 PABPN1Q86U42 306 aaKnown RBP eCLIP66.69■■■■■ 8.27
SSSCA1-205ENST00000527920 BICRAQ9NZM4 1560 aa66.54■■■■■ 8.24
SSSCA1-205ENST00000527920 DNAJC5BQ9UF47 199 aa66.16■■■■■ 8.18
SSSCA1-205ENST00000527920 SCRIBQ14160 1630 aa66.09■■■■■ 8.17
SSSCA1-205ENST00000527920 SHROOM4Q9ULL8 1493 aa65.98■■■■■ 8.15
SSSCA1-205ENST00000527920 EIF4G1Q04637 1599 aaKnown RBP64.84■■■■■ 7.97
SSSCA1-205ENST00000527920 CC2D2AQ9P2K1 1620 aa64.68■■■■■ 7.95
SSSCA1-205ENST00000527920 CECR2Q9BXF3 1484 aa64.38■■■■■ 7.9
SSSCA1-205ENST00000527920 SMARCA4P51532 1647 aa63.23■■■■■ 7.71
SSSCA1-205ENST00000527920 NCAPD3P42695 1498 aa63.19■■■■■ 7.71
SSSCA1-205ENST00000527920 BAZ1AQ9NRL2 1556 aaPredicted RBP63.13■■■■■ 7.7
SSSCA1-205ENST00000527920 ATAD2BQ9ULI0 1458 aa63.08■■■■■ 7.69
SSSCA1-205ENST00000527920 SMARCA2P51531 1590 aa63■■■■■ 7.68
SSSCA1-205ENST00000527920 HMGXB3Q12766 1538 aa62.81■■■■■ 7.65
SSSCA1-205ENST00000527920 PEG3Q9GZU2 1588 aa62.73■■■■■ 7.63
SSSCA1-205ENST00000527920 MROH2BQ7Z745 1585 aa62.66■■■■■ 7.62
SSSCA1-205ENST00000527920 BAZ1BQ9UIG0 1483 aaKnown RBP62.51■■■■■ 7.6
SSSCA1-205ENST00000527920 WIZO95785 1651 aa61.89■■■■■ 7.5
SSSCA1-205ENST00000527920 RSF1Q96T23 1441 aaPredicted RBP61.77■■■■■ 7.48
SSSCA1-205ENST00000527920 ERCC6Q03468 1493 aa61.72■■■■■ 7.47
SSSCA1-205ENST00000527920 NESP48681 1621 aa61.7■■■■■ 7.47
SSSCA1-205ENST00000527920 LAMC3Q9Y6N6 1575 aa61.57■■■■■ 7.45
SSSCA1-205ENST00000527920 CUX2O14529 1486 aa61.38■■■■■ 7.42
SSSCA1-205ENST00000527920 TOP2AP11388 1531 aaKnown RBP61.31■■■■■ 7.41
SSSCA1-205ENST00000527920 CADPSQ9ULU8 1353 aa61.27■■■■■ 7.4
SSSCA1-205ENST00000527920 PDS5BQ9NTI5 1447 aa61.19■■■■■ 7.39
SSSCA1-205ENST00000527920 THOC2Q8NI27 1593 aaKnown RBP60.96■■■■■ 7.35
SSSCA1-205ENST00000527920 KIF21AQ7Z4S6 1674 aa60.92■■■■■ 7.34
SSSCA1-205ENST00000527920 CFTRP13569 1480 aa60.81■■■■■ 7.33
SSSCA1-205ENST00000527920 MRC2Q9UBG0 1479 aa60.58■■■■■ 7.29
SSSCA1-205ENST00000527920 CCDC88BA6NC98 1476 aa60.55■■■■■ 7.28
SSSCA1-205ENST00000527920 FANCD2Q9BXW9 1451 aa60.54■■■■■ 7.28
SSSCA1-205ENST00000527920 CEP164Q9UPV0 1460 aa60.53■■■■■ 7.28
SSSCA1-205ENST00000527920 WDR62O43379 1518 aa60.41■■■■■ 7.26
SSSCA1-205ENST00000527920 PRDM2Q13029 1718 aa60.18■■■■■ 7.22
SSSCA1-205ENST00000527920 DNAJC5Q9H3Z4 198 aa60.13■■■■■ 7.22
SSSCA1-205ENST00000527920 URB2Q14146 1524 aaKnown RBP59.96■■■■■ 7.19
SSSCA1-205ENST00000527920 SUPT5HO00267 1087 aaKnown RBP59.61■■■■■ 7.13
SSSCA1-205ENST00000527920 ABCC8Q09428 1581 aa59.55■■■■■ 7.12
SSSCA1-205ENST00000527920 TOPBP1Q92547 1522 aa59.51■■■■■ 7.12
SSSCA1-205ENST00000527920 DNMBPQ6XZF7 1577 aa59.39■■■■■ 7.1
SSSCA1-205ENST00000527920 IFT140Q96RY7 1462 aa59.32■■■■■ 7.09
SSSCA1-205ENST00000527920 ZNF608Q9ULD9 1512 aaPredicted RBP59.02■■■■■ 7.04
SSSCA1-205ENST00000527920 POLA1P09884 1462 aaPredicted RBP58.97■■■■■ 7.03
SSSCA1-205ENST00000527920 TARBP1Q13395 1621 aaKnown RBP58.89■■■■■ 7.02
SSSCA1-205ENST00000527920 CUX1P39880 1505 aa58.83■■■■■ 7.01
SSSCA1-205ENST00000527920 EIF4G3O43432 1585 aaKnown RBP58.77■■■■■ 7
SSSCA1-205ENST00000527920 FGD5Q6ZNL6 1462 aa58.72■■■■■ 6.99
SSSCA1-205ENST00000527920 SOGA1O94964 1423 aa58.7■■■■■ 6.99
SSSCA1-205ENST00000527920 OSCARQ8IYS5 282 aa58.66■■■■■ 6.98
SSSCA1-205ENST00000527920 RAD54L2Q9Y4B4 1467 aa58.66■■■■■ 6.98
SSSCA1-205ENST00000527920 AQRO60306 1485 aaKnown RBP eCLIP58.61■■■■■ 6.974e-6■■■■■ 31
SSSCA1-205ENST00000527920 WDR97A6NE52 1622 aa58.5■■■■■ 6.96
SSSCA1-205ENST00000527920 TDRD9Q8NDG6 1382 aaKnown RBP58.41■■■■■ 6.94
SSSCA1-205ENST00000527920 WRNQ14191 1432 aaPredicted RBP eCLIP58.26■■■■■ 6.92
SSSCA1-205ENST00000527920 TOP2BQ02880 1626 aa58.19■■■■■ 6.91
SSSCA1-205ENST00000527920 ABCA10Q8WWZ4 1543 aa58.18■■■■■ 6.9
SSSCA1-205ENST00000527920 BIVM-ERCC5R4GMW8 1640 aa58.17■■■■■ 6.9
SSSCA1-205ENST00000527920 GRIN2BQ13224 1484 aa58.13■■■■■ 6.9
SSSCA1-205ENST00000527920 SYNJ1O43426 1573 aa58.08■■■■■ 6.89
SSSCA1-205ENST00000527920 SNAPC4Q5SXM2 1469 aa58.07■■■■■ 6.89
SSSCA1-205ENST00000527920 CHD1O14646 1710 aa58.07■■■■■ 6.89
SSSCA1-205ENST00000527920 MAGI1Q96QZ7 1491 aaPredicted RBP58.06■■■■■ 6.89
SSSCA1-205ENST00000527920 GAPVD1Q14C86 1478 aa58.02■■■■■ 6.88
SSSCA1-205ENST00000527920 ABCA5Q8WWZ7 1642 aa57.97■■■■■ 6.87
SSSCA1-205ENST00000527920 FBLN2P98095 1184 aa57.95■■■■■ 6.87
SSSCA1-205ENST00000527920 PBRM1Q86U86 1689 aa57.85■■■■■ 6.85
SSSCA1-205ENST00000527920 SYNJ2O15056 1496 aa57.82■■■■■ 6.85
SSSCA1-205ENST00000527920 CHMP7Q8WUX9 453 aaPredicted RBP57.78■■■■■ 6.84
SSSCA1-205ENST00000527920 TRIM41Q8WV44 630 aa57.75■■■■■ 6.84
SSSCA1-205ENST00000527920 RIMBP3CA6NJZ7 1639 aa57.73■■■■■ 6.83
SSSCA1-205ENST00000527920 RIMBP3BA6NNM3 1639 aa57.73■■■■■ 6.83
SSSCA1-205ENST00000527920 RIMBP3Q9UFD9 1639 aa57.73■■■■■ 6.83
SSSCA1-205ENST00000527920 ARHGEF11O15085 1522 aa57.71■■■■■ 6.83
SSSCA1-205ENST00000527920 CLASP1Q7Z460 1538 aa57.55■■■■■ 6.8
SSSCA1-205ENST00000527920 ERICH3Q5RHP9 1530 aa57.48■■■■■ 6.79
SSSCA1-205ENST00000527920 ADAMTS12P58397 1594 aa57.44■■■■■ 6.79
SSSCA1-205ENST00000527920 FHAD1B1AJZ9 1412 aa57.37■■■■■ 6.77
SSSCA1-205ENST00000527920 GRIN2AQ12879 1464 aa57.36■■■■■ 6.77
SSSCA1-205ENST00000527920 ARAP1Q96P48 1450 aa57.21■■■■■ 6.75
SSSCA1-205ENST00000527920 NUP160Q12769 1436 aa57.18■■■■■ 6.74
SSSCA1-205ENST00000527920 CYB5RLQ6IPT4 315 aa57.14■■■■■ 6.74
SSSCA1-205ENST00000527920 KIF27Q86VH2 1401 aa57.1■■■■■ 6.73
SSSCA1-205ENST00000527920 CEP170Q5SW79 1584 aa57.06■■■■■ 6.72
SSSCA1-205ENST00000527920 IGF1RP08069 1367 aa56.94■■■■■ 6.71
SSSCA1-205ENST00000527920 CUL7Q14999 1698 aa56.8■■■■■ 6.68
SSSCA1-205ENST00000527920 SHROOM2Q13796 1616 aa56.77■■■■■ 6.68
SSSCA1-205ENST00000527920 ERCC6L2Q5T890 1561 aa56.62■■■■■ 6.65
SSSCA1-205ENST00000527920 RUSC2Q8N2Y8 1516 aa56.61■■■■■ 6.65
SSSCA1-205ENST00000527920 CARMIL1Q5VZK9 1371 aa56.57■■■■■ 6.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms