Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.71■■■■□ 3.15
CFAP54Q96N23 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.48■■■■□ 3.11
CFAP54Q96N23 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.78■■■■□ 3
CFAP54Q96N23 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
CFAP54Q96N23 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.64■■■□□ 2.98
CFAP54Q96N23 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
CFAP54Q96N23 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
CFAP54Q96N23 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.17■■■□□ 2.9
CFAP54Q96N23 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.08■■■□□ 2.89
CFAP54Q96N23 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.99■■■□□ 2.87
CFAP54Q96N23 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CFAP54Q96N23 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CFAP54Q96N23 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CFAP54Q96N23 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.57■■■□□ 2.81
CFAP54Q96N23 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CFAP54Q96N23 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.35■■■□□ 2.77
CFAP54Q96N23 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.33■■■□□ 2.77
CFAP54Q96N23 AC006077.2-201ENST00000623591 457 ntBASIC32.22■■■□□ 2.75
CFAP54Q96N23 ZNRF2P1-201ENST00000441407 443 ntBASIC32.16■■■□□ 2.74
CFAP54Q96N23 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
CFAP54Q96N23 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
CFAP54Q96N23 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.95■■■□□ 2.7
CFAP54Q96N23 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CFAP54Q96N23 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CFAP54Q96N23 AL356512.1-201ENST00000607453 1739 ntBASIC31.83■■■□□ 2.69
CFAP54Q96N23 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.83■■■□□ 2.69
CFAP54Q96N23 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
CFAP54Q96N23 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.74■■■□□ 2.67
CFAP54Q96N23 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CFAP54Q96N23 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.57■■■□□ 2.64
CFAP54Q96N23 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
CFAP54Q96N23 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CFAP54Q96N23 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.37■■■□□ 2.61
CFAP54Q96N23 AP002365.1-201ENST00000603448 772 ntBASIC31.33■■■□□ 2.61
CFAP54Q96N23 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.17■■■□□ 2.58
CFAP54Q96N23 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CFAP54Q96N23 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.14■■■□□ 2.58
CFAP54Q96N23 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.13■■■□□ 2.57
CFAP54Q96N23 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.13■■■□□ 2.57
CFAP54Q96N23 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
CFAP54Q96N23 AC015813.7-201ENST00000623294 581 ntBASIC31.07■■■□□ 2.56
CFAP54Q96N23 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.06■■■□□ 2.56
CFAP54Q96N23 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
CFAP54Q96N23 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
CFAP54Q96N23 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.99■■■□□ 2.55
CFAP54Q96N23 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CFAP54Q96N23 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.93■■■□□ 2.54
CFAP54Q96N23 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CFAP54Q96N23 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.82■■■□□ 2.52
CFAP54Q96N23 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CFAP54Q96N23 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CFAP54Q96N23 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CFAP54Q96N23 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.58■■■□□ 2.49
CFAP54Q96N23 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.54■■■□□ 2.48
CFAP54Q96N23 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.53■■■□□ 2.48
CFAP54Q96N23 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.53■■■□□ 2.48
CFAP54Q96N23 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CFAP54Q96N23 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.5■■■□□ 2.47
CFAP54Q96N23 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
CFAP54Q96N23 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.48■■■□□ 2.47
CFAP54Q96N23 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.45■■■□□ 2.46
CFAP54Q96N23 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CFAP54Q96N23 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CFAP54Q96N23 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CFAP54Q96N23 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.28■■■□□ 2.44
CFAP54Q96N23 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.25■■■□□ 2.43
CFAP54Q96N23 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CFAP54Q96N23 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.22■■■□□ 2.43
CFAP54Q96N23 RPS2P35-201ENST00000443417 897 ntBASIC30.22■■■□□ 2.43
CFAP54Q96N23 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.21■■■□□ 2.43
CFAP54Q96N23 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.21■■■□□ 2.43
CFAP54Q96N23 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.21■■■□□ 2.43
CFAP54Q96N23 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
CFAP54Q96N23 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CFAP54Q96N23 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.17■■■□□ 2.42
CFAP54Q96N23 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CFAP54Q96N23 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CFAP54Q96N23 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.13■■■□□ 2.41
CFAP54Q96N23 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.09■■■□□ 2.41
CFAP54Q96N23 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CFAP54Q96N23 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.41
CFAP54Q96N23 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CFAP54Q96N23 DYNLL1-208ENST00000550178 581 ntBASIC30.05■■■□□ 2.4
CFAP54Q96N23 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
CFAP54Q96N23 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.02■■■□□ 2.4
CFAP54Q96N23 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CFAP54Q96N23 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CFAP54Q96N23 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.98■■■□□ 2.39
CFAP54Q96N23 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CFAP54Q96N23 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CFAP54Q96N23 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.9■■■□□ 2.38
CFAP54Q96N23 RARRES2P7-201ENST00000567349 469 ntBASIC29.9■■■□□ 2.38
CFAP54Q96N23 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.9■■■□□ 2.38
CFAP54Q96N23 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CFAP54Q96N23 AC136428.2-201ENST00000563187 214 ntBASIC29.84■■■□□ 2.37
CFAP54Q96N23 SUZ12P1-203ENST00000578195 985 ntBASIC29.82■■■□□ 2.36
CFAP54Q96N23 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CFAP54Q96N23 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CFAP54Q96N23 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.76■■■□□ 2.36
CFAP54Q96N23 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.76■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms