Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC22.11■■□□□ 1.13
APOBP04114 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
APOBP04114 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
APOBP04114 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOBP04114 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
APOBP04114 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
APOBP04114 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
APOBP04114 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOBP04114 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
APOBP04114 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
APOBP04114 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC21.06■□□□□ 0.96
APOBP04114 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.99■□□□□ 0.95
APOBP04114 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOBP04114 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20.92■□□□□ 0.94
APOBP04114 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
APOBP04114 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
APOBP04114 AL356512.1-201ENST00000607453 1739 ntBASIC20.82■□□□□ 0.92
APOBP04114 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOBP04114 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOBP04114 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
APOBP04114 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
APOBP04114 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.43■□□□□ 0.86
APOBP04114 ZNRF2P1-201ENST00000441407 443 ntBASIC20.42■□□□□ 0.86
APOBP04114 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOBP04114 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOBP04114 AC006077.2-201ENST00000623591 457 ntBASIC20.33■□□□□ 0.85
APOBP04114 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOBP04114 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
APOBP04114 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
APOBP04114 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.27■□□□□ 0.84
APOBP04114 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOBP04114 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.19■□□□□ 0.82
APOBP04114 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
APOBP04114 AC015813.7-201ENST00000623294 581 ntBASIC19.97■□□□□ 0.79
APOBP04114 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC19.9■□□□□ 0.78
APOBP04114 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.86■□□□□ 0.77
APOBP04114 HES6-203ENST00000409160 1600 ntTSL 2 BASIC19.83■□□□□ 0.77
APOBP04114 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
APOBP04114 AP002365.1-201ENST00000603448 772 ntBASIC19.8■□□□□ 0.76
APOBP04114 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
APOBP04114 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
APOBP04114 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
APOBP04114 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC19.75■□□□□ 0.75
APOBP04114 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
APOBP04114 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOBP04114 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
APOBP04114 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.67■□□□□ 0.74
APOBP04114 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
APOBP04114 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.64■□□□□ 0.73
APOBP04114 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC19.61■□□□□ 0.73
APOBP04114 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOBP04114 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
APOBP04114 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
APOBP04114 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.54■□□□□ 0.72
APOBP04114 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.54■□□□□ 0.72
APOBP04114 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
APOBP04114 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOBP04114 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC19.48■□□□□ 0.71
APOBP04114 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
APOBP04114 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
APOBP04114 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
APOBP04114 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.38■□□□□ 0.69
APOBP04114 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
APOBP04114 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
APOBP04114 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
APOBP04114 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.32■□□□□ 0.68
APOBP04114 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOBP04114 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
APOBP04114 DYNLL1-208ENST00000550178 581 ntBASIC19.26■□□□□ 0.67
APOBP04114 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
APOBP04114 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC19.23■□□□□ 0.67
APOBP04114 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.22■□□□□ 0.67
APOBP04114 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
APOBP04114 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.2■□□□□ 0.66
APOBP04114 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.19■□□□□ 0.66
APOBP04114 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOBP04114 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOBP04114 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOBP04114 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOBP04114 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.13■□□□□ 0.65
APOBP04114 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
APOBP04114 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.1■□□□□ 0.65
APOBP04114 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
APOBP04114 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
APOBP04114 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.08■□□□□ 0.65
APOBP04114 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOBP04114 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOBP04114 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOBP04114 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.05■□□□□ 0.64
APOBP04114 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOBP04114 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC19.05■□□□□ 0.64
APOBP04114 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOBP04114 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.04■□□□□ 0.64
APOBP04114 AL031258.1-201ENST00000623562 325 ntBASIC19.03■□□□□ 0.64
APOBP04114 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.02■□□□□ 0.64
APOBP04114 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.02■□□□□ 0.64
APOBP04114 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.02■□□□□ 0.63
APOBP04114 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19■□□□□ 0.63
APOBP04114 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
APOBP04114 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms