Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC15.98■□□□□ 0.15
USH2AO75445 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
USH2AO75445 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
USH2AO75445 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
USH2AO75445 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
USH2AO75445 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
USH2AO75445 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USH2AO75445 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
USH2AO75445 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
USH2AO75445 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USH2AO75445 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USH2AO75445 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC15.16■□□□□ 0.02
USH2AO75445 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC15.13■□□□□ 0.01
USH2AO75445 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USH2AO75445 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC15.01□□□□□ -0.01
USH2AO75445 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
USH2AO75445 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
USH2AO75445 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
USH2AO75445 ZNRF2P1-201ENST00000441407 443 ntBASIC14.85□□□□□ -0.03
USH2AO75445 INO80B-203ENST00000409917 796 ntTSL 2 BASIC14.77□□□□□ -0.04
USH2AO75445 AC006077.2-201ENST00000623591 457 ntBASIC14.77□□□□□ -0.05
USH2AO75445 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USH2AO75445 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USH2AO75445 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
USH2AO75445 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
USH2AO75445 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USH2AO75445 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC14.7□□□□□ -0.06
USH2AO75445 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC14.69□□□□□ -0.06
USH2AO75445 AL356512.1-201ENST00000607453 1739 ntBASIC14.67□□□□□ -0.06
USH2AO75445 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
USH2AO75445 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
USH2AO75445 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
USH2AO75445 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USH2AO75445 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
USH2AO75445 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
USH2AO75445 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
USH2AO75445 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC14.4□□□□□ -0.1
USH2AO75445 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USH2AO75445 AP002365.1-201ENST00000603448 772 ntBASIC14.39□□□□□ -0.11
USH2AO75445 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
USH2AO75445 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
USH2AO75445 AC015813.7-201ENST00000623294 581 ntBASIC14.35□□□□□ -0.11
USH2AO75445 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC14.34□□□□□ -0.11
USH2AO75445 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
USH2AO75445 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
USH2AO75445 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC14.29□□□□□ -0.12
USH2AO75445 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
USH2AO75445 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USH2AO75445 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC14.22□□□□□ -0.13
USH2AO75445 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
USH2AO75445 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC14.16□□□□□ -0.14
USH2AO75445 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USH2AO75445 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
USH2AO75445 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC14.13□□□□□ -0.15
USH2AO75445 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USH2AO75445 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
USH2AO75445 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC14.05□□□□□ -0.16
USH2AO75445 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USH2AO75445 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC14.04□□□□□ -0.16
USH2AO75445 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC14.03□□□□□ -0.16
USH2AO75445 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC14.01□□□□□ -0.17
USH2AO75445 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC13.99□□□□□ -0.17
USH2AO75445 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC13.98□□□□□ -0.17
USH2AO75445 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USH2AO75445 RPS2P35-201ENST00000443417 897 ntBASIC13.97□□□□□ -0.17
USH2AO75445 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USH2AO75445 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
USH2AO75445 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
USH2AO75445 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
USH2AO75445 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
USH2AO75445 DYNLL1-208ENST00000550178 581 ntBASIC13.93□□□□□ -0.18
USH2AO75445 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC13.92□□□□□ -0.18
USH2AO75445 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC13.92□□□□□ -0.18
USH2AO75445 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC13.92□□□□□ -0.18
USH2AO75445 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
USH2AO75445 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC13.92□□□□□ -0.18
USH2AO75445 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USH2AO75445 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
USH2AO75445 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
USH2AO75445 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC13.89□□□□□ -0.19
USH2AO75445 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC13.88□□□□□ -0.19
USH2AO75445 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
USH2AO75445 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC13.87□□□□□ -0.19
USH2AO75445 RARRES2P7-201ENST00000567349 469 ntBASIC13.86□□□□□ -0.19
USH2AO75445 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
USH2AO75445 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USH2AO75445 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USH2AO75445 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC13.8□□□□□ -0.2
USH2AO75445 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC13.8□□□□□ -0.2
USH2AO75445 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC13.79□□□□□ -0.2
USH2AO75445 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USH2AO75445 AL031258.1-201ENST00000623562 325 ntBASIC13.78□□□□□ -0.2
USH2AO75445 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
USH2AO75445 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC13.76□□□□□ -0.21
USH2AO75445 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC13.76□□□□□ -0.21
USH2AO75445 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
USH2AO75445 SUZ12P1-203ENST00000578195 985 ntBASIC13.73□□□□□ -0.21
USH2AO75445 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
USH2AO75445 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
USH2AO75445 HES6-203ENST00000409160 1600 ntTSL 2 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 461.5 ms