Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.04■■■■□ 3.04
CDX4O14627 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34■■■■□ 3.03
CDX4O14627 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.58■■■□□ 2.97
CDX4O14627 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
CDX4O14627 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CDX4O14627 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
CDX4O14627 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.54■■■□□ 2.8
CDX4O14627 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
CDX4O14627 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.39■■■□□ 2.78
CDX4O14627 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
CDX4O14627 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDX4O14627 AL356512.1-201ENST00000607453 1739 ntBASIC32.26■■■□□ 2.76
CDX4O14627 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.14■■■□□ 2.74
CDX4O14627 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.12■■■□□ 2.73
CDX4O14627 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CDX4O14627 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CDX4O14627 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
CDX4O14627 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
CDX4O14627 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.52■■■□□ 2.64
CDX4O14627 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CDX4O14627 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CDX4O14627 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
CDX4O14627 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.44■■■□□ 2.62
CDX4O14627 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
CDX4O14627 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDX4O14627 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CDX4O14627 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.27■■■□□ 2.6
CDX4O14627 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CDX4O14627 ZNRF2P1-201ENST00000441407 443 ntBASIC31.09■■■□□ 2.57
CDX4O14627 AC006077.2-201ENST00000623591 457 ntBASIC31.07■■■□□ 2.56
CDX4O14627 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.95■■■□□ 2.55
CDX4O14627 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.87■■■□□ 2.53
CDX4O14627 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CDX4O14627 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CDX4O14627 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.75■■■□□ 2.51
CDX4O14627 AC015813.7-201ENST00000623294 581 ntBASIC30.75■■■□□ 2.51
CDX4O14627 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.67■■■□□ 2.5
CDX4O14627 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CDX4O14627 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC30.55■■■□□ 2.48
CDX4O14627 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CDX4O14627 AP002365.1-201ENST00000603448 772 ntBASIC30.3■■■□□ 2.44
CDX4O14627 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.26■■■□□ 2.44
CDX4O14627 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CDX4O14627 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CDX4O14627 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
CDX4O14627 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CDX4O14627 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.08■■■□□ 2.41
CDX4O14627 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.08■■■□□ 2.41
CDX4O14627 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.07■■■□□ 2.4
CDX4O14627 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CDX4O14627 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.99■■■□□ 2.39
CDX4O14627 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CDX4O14627 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.94■■■□□ 2.38
CDX4O14627 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.94■■■□□ 2.38
CDX4O14627 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.93■■■□□ 2.38
CDX4O14627 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CDX4O14627 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CDX4O14627 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
CDX4O14627 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.88■■■□□ 2.37
CDX4O14627 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.82■■■□□ 2.36
CDX4O14627 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CDX4O14627 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.76■■■□□ 2.35
CDX4O14627 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
CDX4O14627 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
CDX4O14627 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.65■■■□□ 2.34
CDX4O14627 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CDX4O14627 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
CDX4O14627 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
CDX4O14627 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CDX4O14627 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.55■■■□□ 2.32
CDX4O14627 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.32
CDX4O14627 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CDX4O14627 DYNLL1-208ENST00000550178 581 ntBASIC29.48■■■□□ 2.31
CDX4O14627 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CDX4O14627 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
CDX4O14627 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
CDX4O14627 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
CDX4O14627 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.3
CDX4O14627 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CDX4O14627 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.39■■■□□ 2.3
CDX4O14627 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.36■■■□□ 2.29
CDX4O14627 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.35■■■□□ 2.29
CDX4O14627 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CDX4O14627 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CDX4O14627 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CDX4O14627 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.31■■■□□ 2.28
CDX4O14627 AL031258.1-201ENST00000623562 325 ntBASIC29.27■■■□□ 2.28
CDX4O14627 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
CDX4O14627 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.27
CDX4O14627 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CDX4O14627 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.19■■■□□ 2.26
CDX4O14627 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CDX4O14627 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
CDX4O14627 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.15■■■□□ 2.26
CDX4O14627 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.15■■■□□ 2.26
CDX4O14627 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CDX4O14627 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.13■■■□□ 2.25
CDX4O14627 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.13■■■□□ 2.25
CDX4O14627 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CDX4O14627 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.12■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms