Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 DCUN1D5-203ENST00000527260 808 ntTSL 59.5□□□□□ -0.897e-10■□□□□ 10.6
SMNDC1O75940 XPO1-217ENST00000475744 249 ntTSL 28.38□□□□□ -1.077e-10■□□□□ 10.6
SMNDC1O75940 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.327e-10■□□□□ 10.6
SMNDC1O75940 XPO1-208ENST00000437159 537 ntTSL 56.46□□□□□ -1.387e-10■□□□□ 10.6
SMNDC1O75940 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC14.19□□□□□ -0.142e-20■□□□□ 10.5
SMNDC1O75940 ARGLU1-204ENST00000472226 1336 ntTSL 29.4□□□□□ -0.92e-20■□□□□ 10.5
SMNDC1O75940 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.312e-20■□□□□ 10.5
SMNDC1O75940 ARGLU1-201ENST00000360629 361 ntTSL 25.52□□□□□ -1.532e-20■□□□□ 10.5
SMNDC1O75940 FUS-212ENST00000569760 639 ntTSL 221.09■□□□□ 0.974e-13■□□□□ 10.5
SMNDC1O75940 FUS-204ENST00000483853 778 ntTSL 219.12■□□□□ 0.654e-13■□□□□ 10.5
SMNDC1O75940 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.074e-8■□□□□ 10.5
SMNDC1O75940 GUK1-228ENST00000485168 737 ntTSL 314.83□□□□□ -0.044e-8■□□□□ 10.5
SMNDC1O75940 GUK1-237ENST00000495999 555 ntTSL 314.12□□□□□ -0.154e-8■□□□□ 10.5
SMNDC1O75940 GUK1-216ENST00000464858 633 ntTSL 313.89□□□□□ -0.194e-8■□□□□ 10.5
SMNDC1O75940 GUK1-223ENST00000478725 414 ntTSL 312.29□□□□□ -0.444e-8■□□□□ 10.5
SMNDC1O75940 GUK1-232ENST00000486668 738 ntTSL 311.52□□□□□ -0.574e-8■□□□□ 10.5
SMNDC1O75940 PRSS21-208ENST00000575199 679 ntTSL 219.22■□□□□ 0.672e-7■□□□□ 10.5
SMNDC1O75940 PRSS21-210ENST00000577043 814 ntTSL 516.67■□□□□ 0.262e-7■□□□□ 10.5
SMNDC1O75940 PRSS21-206ENST00000574265 860 ntTSL 311.42□□□□□ -0.582e-7■□□□□ 10.5
SMNDC1O75940 PRSS21-209ENST00000575739 378 ntTSL 38.07□□□□□ -1.122e-7■□□□□ 10.5
SMNDC1O75940 SNORA31.25-201ENST00000517242 134 ntBASIC2.43□□□□□ -2.021e-51■□□□□ 10.5
SMNDC1O75940 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.36■■□□□ 1.331e-323■□□□□ 10.5
SMNDC1O75940 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.96■■□□□ 1.271e-323■□□□□ 10.5
SMNDC1O75940 SNHG7-202ENST00000416970 789 ntTSL 1 (best)21.06■□□□□ 0.961e-323■□□□□ 10.5
SMNDC1O75940 SNORA17A-201ENST00000391185 133 ntBASIC5.29□□□□□ -1.561e-323■□□□□ 10.5
SMNDC1O75940 SNORA17.5-201ENST00000630429 132 ntBASIC5.29□□□□□ -1.561e-323■□□□□ 10.5
SMNDC1O75940 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.252e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-203ENST00000391836 732 ntTSL 510.35□□□□□ -0.752e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-201ENST00000366516 1863 ntTSL 1 (best)9.81□□□□□ -0.842e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-217ENST00000493441 823 ntTSL 29.52□□□□□ -0.892e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-209ENST00000470510 1042 ntTSL 58.89□□□□□ -0.992e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC8.1□□□□□ -1.112e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-202ENST00000366517 1372 ntTSL 1 (best)7.97□□□□□ -1.132e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-216ENST00000492487 634 ntTSL 37.36□□□□□ -1.232e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-208ENST00000464398 540 ntTSL 37.16□□□□□ -1.262e-6■□□□□ 10.5
SMNDC1O75940 SMYD3-213ENST00000488153 653 ntTSL 35.49□□□□□ -1.532e-6■□□□□ 10.5
SMNDC1O75940 PKP4-209ENST00000479398 550 ntTSL 518.55■□□□□ 0.562e-7■□□□□ 10.5
SMNDC1O75940 PIEZO1-209ENST00000490756 446 ntTSL 318.37■□□□□ 0.531e-10■□□□□ 10.5
SMNDC1O75940 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC12.22□□□□□ -0.452e-7■□□□□ 10.5
SMNDC1O75940 PRPF4B-206ENST00000481109 2364 ntTSL 1 (best)11.84□□□□□ -0.512e-7■□□□□ 10.5
SMNDC1O75940 PRPF4B-209ENST00000494674 1727 ntTSL 510.2□□□□□ -0.782e-7■□□□□ 10.5
SMNDC1O75940 DDX3Y-202ENST00000360160 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.82e-7■□□□□ 10.5
SMNDC1O75940 DUXAP9-205ENST00000619938 642 ntTSL 1 (best)9.98□□□□□ -0.812e-7■□□□□ 10.5
SMNDC1O75940 DUXAP9-203ENST00000610585 903 ntTSL 39.76□□□□□ -0.852e-7■□□□□ 10.5
SMNDC1O75940 PKP4-203ENST00000411900 552 ntTSL 49.07□□□□□ -0.962e-7■□□□□ 10.5
SMNDC1O75940 PKP4-207ENST00000457109 520 ntTSL 38.02□□□□□ -1.132e-7■□□□□ 10.5
SMNDC1O75940 PRPF4B-203ENST00000463634 2590 ntTSL 58.01□□□□□ -1.132e-7■□□□□ 10.5
SMNDC1O75940 PRPF4B-202ENST00000461612 629 ntTSL 27.62□□□□□ -1.192e-7■□□□□ 10.5
SMNDC1O75940 FN1-213ENST00000456923 3720 ntTSL 27.31□□□□□ -1.242e-7■□□□□ 10.5
SMNDC1O75940 DUXAP9-207ENST00000621361 2397 ntTSL 1 (best)6.98□□□□□ -1.292e-7■□□□□ 10.5
SMNDC1O75940 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.392e-7■□□□□ 10.5
SMNDC1O75940 PRPF4B-205ENST00000480058 6775 ntTSL 1 (best)6.17□□□□□ -1.422e-7■□□□□ 10.5
SMNDC1O75940 DDX3Y-205ENST00000463199 621 ntTSL 35.7□□□□□ -1.52e-7■□□□□ 10.5
SMNDC1O75940 FN1-224ENST00000492816 9171 ntTSL 55.39□□□□□ -1.552e-7■□□□□ 10.5
SMNDC1O75940 TMC6-204ENST00000585849 552 ntTSL 217.3■□□□□ 0.362e-6■□□□□ 10.5
SMNDC1O75940 INTS11-234ENST00000527383 668 ntTSL 313□□□□□ -0.335e-6■□□□□ 10.5
SMNDC1O75940 INTS11-212ENST00000462432 2863 ntTSL 1 (best)12.73□□□□□ -0.375e-6■□□□□ 10.5
SMNDC1O75940 INTS11-213ENST00000467408 639 ntTSL 210.87□□□□□ -0.675e-6■□□□□ 10.5
SMNDC1O75940 INTS11-245ENST00000533916 405 ntTSL 210.19□□□□□ -0.785e-6■□□□□ 10.5
SMNDC1O75940 COL27A1-207ENST00000494090 5329 ntTSL 1 (best)19.46■□□□□ 0.719e-7■□□□□ 10.4
SMNDC1O75940 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.469e-7■□□□□ 10.4
SMNDC1O75940 SNORA33-201ENST00000363664 130 ntBASIC3.18□□□□□ -1.91e-323■□□□□ 10.4
SMNDC1O75940 RBM39-204ENST00000374038 1026 ntTSL 513.93□□□□□ -0.184e-11■□□□□ 10.4
SMNDC1O75940 RBM39-207ENST00000412738 1018 ntTSL 312.43□□□□□ -0.424e-11■□□□□ 10.4
SMNDC1O75940 RBM39-232ENST00000481037 687 ntTSL 310.82□□□□□ -0.684e-11■□□□□ 10.4
SMNDC1O75940 RBM39-214ENST00000434927 716 ntTSL 58.38□□□□□ -1.074e-11■□□□□ 10.4
SMNDC1O75940 RBM39-210ENST00000425184 526 ntTSL 37.32□□□□□ -1.244e-11■□□□□ 10.4
SMNDC1O75940 RBM39-220ENST00000455343 441 ntTSL 55.31□□□□□ -1.564e-11■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.46■□□□□ 0.061e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-206ENST00000489616 583 ntTSL 214.43□□□□□ -0.11e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-213ENST00000520629 415 ntTSL 314.31□□□□□ -0.121e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.82□□□□□ -0.361e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-217ENST00000522221 979 ntTSL 29.1□□□□□ -0.951e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-219ENST00000523354 459 ntTSL 28.86□□□□□ -0.991e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-201ENST00000467069 667 ntTSL 58.58□□□□□ -1.041e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC8.07□□□□□ -1.121e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-205ENST00000481221 683 ntTSL 3 BASIC7.61□□□□□ -1.191e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-211ENST00000520396 550 ntTSL 36.17□□□□□ -1.421e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-214ENST00000521267 851 ntTSL 36.17□□□□□ -1.421e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.99□□□□□ -1.451e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-218ENST00000522525 1867 ntTSL 1 (best)5.47□□□□□ -1.531e-8■□□□□ 10.4
SMNDC1O75940 THUMPD3-AS1-207ENST00000494680 544 ntTSL 54.31□□□□□ -1.721e-8■□□□□ 10.4
SMNDC1O75940 TMC6-206ENST00000586271 970 ntTSL 216.71■□□□□ 0.271e-6■□□□□ 10.4
SMNDC1O75940 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.393e-7■□□□□ 10.4
SMNDC1O75940 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.19■□□□□ 0.666e-20■□□□□ 10.4
SMNDC1O75940 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.356e-20■□□□□ 10.4
SMNDC1O75940 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.91■□□□□ 0.143e-7■□□□□ 10.4
SMNDC1O75940 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.113e-7■□□□□ 10.4
SMNDC1O75940 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.093e-7■□□□□ 10.4
SMNDC1O75940 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.5■□□□□ 0.073e-7■□□□□ 10.4
SMNDC1O75940 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.35■□□□□ 0.056e-20■□□□□ 10.4
SMNDC1O75940 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.18■□□□□ 0.023e-7■□□□□ 10.4
SMNDC1O75940 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.063e-7■□□□□ 10.4
SMNDC1O75940 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.073e-7■□□□□ 10.4
SMNDC1O75940 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.13e-7■□□□□ 10.4
SMNDC1O75940 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.28□□□□□ -0.125e-9■□□□□ 10.4
SMNDC1O75940 ARID1A-208ENST00000532781 2583 ntTSL 1 (best)13.48□□□□□ -0.253e-7■□□□□ 10.4
SMNDC1O75940 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.251e-9■□□□□ 10.4
SMNDC1O75940 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.261e-7■□□□□ 10.4
SMNDC1O75940 TMEM63A-203ENST00000474478 5407 ntTSL 212.76□□□□□ -0.375e-9■□□□□ 10.4
Retrieved 100 of 11,362 protein–RNA pairs in 116.7 ms