RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 DCAF8L2P0C7V8 631 aa29.97■■■□□ 2.39
COL27A1-201ENST00000356083 EHMT2Q96KQ7 1210 aa28.34■■■□□ 2.13
COL27A1-201ENST00000356083 PELP1Q8IZL8 1130 aaKnown RBP27.79■■■□□ 2.04
COL27A1-201ENST00000356083 SUPT5HO00267 1087 aaKnown RBP27.68■■■□□ 2.02
COL27A1-201ENST00000356083 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
COL27A1-201ENST00000356083 ERICH6Q7L0X2 663 aa27.19■■□□□ 1.94
COL27A1-201ENST00000356083 TTBK1Q5TCY1 1321 aaPredicted RBP27.18■■□□□ 1.94
COL27A1-201ENST00000356083 APLP2Q06481 763 aa27.13■■□□□ 1.93
COL27A1-201ENST00000356083 FAM9AQ8IZU1 332 aaPredicted RBP26.96■■□□□ 1.91
COL27A1-201ENST00000356083 RANGAP1P46060 587 aaPredicted RBP26.81■■□□□ 1.88
COL27A1-201ENST00000356083 ATP1B4Q9UN42 357 aaPredicted RBP26.75■■□□□ 1.87
COL27A1-201ENST00000356083 CCER1Q8TC90 406 aaPredicted RBP26.63■■□□□ 1.85
COL27A1-201ENST00000356083 MYT1Q01538 1121 aa26.6■■□□□ 1.85
COL27A1-201ENST00000356083 PCGF6Q9BYE7 350 aa26.44■■□□□ 1.82
COL27A1-201ENST00000356083 MYT1LQ9UL68 1186 aa26.1■■□□□ 1.77
COL27A1-201ENST00000356083 CHIC1Q5VXU3 224 aa26.09■■□□□ 1.77
COL27A1-201ENST00000356083 NEFLP07196 543 aa26.04■■□□□ 1.76
COL27A1-201ENST00000356083 YTHDC1Q96MU7 727 aaKnown RBP26.03■■□□□ 1.76
COL27A1-201ENST00000356083 CENPBP07199 599 aaPredicted RBP26.02■■□□□ 1.76
COL27A1-201ENST00000356083 DAXXQ9UER7 740 aaPredicted RBP25.94■■□□□ 1.74
COL27A1-201ENST00000356083 POLR3GLQ9BT43 218 aa25.92■■□□□ 1.74
COL27A1-201ENST00000356083 CNGB1Q14028 1251 aaPredicted RBP25.89■■□□□ 1.74
COL27A1-201ENST00000356083 SLC4A1APQ9BWU0 796 aaKnown RBP25.77■■□□□ 1.72
COL27A1-201ENST00000356083 PPARGC1BQ86YN6 1023 aaKnown RBP25.66■■□□□ 1.7
COL27A1-201ENST00000356083 UBTFP17480 764 aaKnown RBP25.62■■□□□ 1.69
COL27A1-201ENST00000356083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.5■■□□□ 1.67
COL27A1-201ENST00000356083 HNRNPUL2Q1KMD3 747 aaKnown RBP25.5■■□□□ 1.67
COL27A1-201ENST00000356083 ITGAEP38570 1179 aa25.37■■□□□ 1.65
COL27A1-201ENST00000356083 CLSPNQ9HAW4 1339 aa25.31■■□□□ 1.64
COL27A1-201ENST00000356083 TRIM41Q8WV44 630 aa25.28■■□□□ 1.64
COL27A1-201ENST00000356083 BCL11AQ9H165 835 aa25.25■■□□□ 1.63
COL27A1-201ENST00000356083 SLC24A1O60721 1099 aa25.22■■□□□ 1.63
COL27A1-201ENST00000356083 ZNF316A6NFI3 1004 aaPredicted RBP25.21■■□□□ 1.63
COL27A1-201ENST00000356083 ZEB1P37275 1124 aaPredicted RBP25.18■■□□□ 1.62
COL27A1-201ENST00000356083 RTL5Q5HYW3 569 aaPredicted RBP24.87■■□□□ 1.57
COL27A1-201ENST00000356083 NISCHQ9Y2I1 1504 aa24.85■■□□□ 1.57
COL27A1-201ENST00000356083 ZBTB47Q9UFB7 747 aaPredicted RBP24.75■■□□□ 1.55
COL27A1-201ENST00000356083 BCANQ96GW7 911 aa24.69■■□□□ 1.54
COL27A1-201ENST00000356083 PLPPR3Q6T4P5 718 aa24.48■■□□□ 1.51
COL27A1-201ENST00000356083 ZNF326Q5BKZ1 582 aaKnown RBP24.38■■□□□ 1.49
COL27A1-201ENST00000356083 CANXP27824 592 aaKnown RBP24.37■■□□□ 1.49
COL27A1-201ENST00000356083 TRIM52Q96A61 297 aa24.36■■□□□ 1.49
COL27A1-201ENST00000356083 FAM50AQ14320 339 aaKnown RBP24.33■■□□□ 1.48
COL27A1-201ENST00000356083 NEUROD1Q13562 356 aa24.28■■□□□ 1.48
COL27A1-201ENST00000356083 NEFMP07197 916 aa24.19■■□□□ 1.46
COL27A1-201ENST00000356083 TRIM26Q12899 539 aaPredicted RBP24.16■■□□□ 1.46
COL27A1-201ENST00000356083 LOC105371045A0A1W2PR82 267 aa24.15■■□□□ 1.46
COL27A1-201ENST00000356083 HRCP23327 699 aa24.14■■□□□ 1.46
COL27A1-201ENST00000356083 A0A0G2JS52 829 aa24.13■■□□□ 1.45
COL27A1-201ENST00000356083 FBLN2P98095 1184 aa24.1■■□□□ 1.45
COL27A1-201ENST00000356083 ARID3CA6NKF2 412 aa24.05■■□□□ 1.44
COL27A1-201ENST00000356083 EIF5BO60841 1220 aaKnown RBP24.01■■□□□ 1.43
COL27A1-201ENST00000356083 NPM2Q86SE8 214 aaKnown RBP24■■□□□ 1.43
COL27A1-201ENST00000356083 SCAF1Q9H7N4 1312 aaKnown RBP24■■□□□ 1.43
COL27A1-201ENST00000356083 CDK11AQ9UQ88 783 aaPredicted RBP24■■□□□ 1.43
COL27A1-201ENST00000356083 HSP90AA1P07900 732 aaKnown RBP23.99■■□□□ 1.43
COL27A1-201ENST00000356083 DIEXFQ68CQ4 756 aaKnown RBP23.94■■□□□ 1.42
COL27A1-201ENST00000356083 PLEKHG5O94827 1062 aa23.92■■□□□ 1.42
COL27A1-201ENST00000356083 TULP1O00294 542 aaPredicted RBP23.92■■□□□ 1.42
COL27A1-201ENST00000356083 ANP32BQ92688 251 aaKnown RBP23.89■■□□□ 1.41
COL27A1-201ENST00000356083 ESF1Q9H501 851 aaKnown RBP23.86■■□□□ 1.41
COL27A1-201ENST00000356083 ARXQ96QS3 562 aa23.86■■□□□ 1.41
COL27A1-201ENST00000356083 CDK11BP21127 795 aaKnown RBP23.85■■□□□ 1.41
COL27A1-201ENST00000356083 SENP3Q9H4L4 574 aaPredicted RBP23.84■■□□□ 1.41
COL27A1-201ENST00000356083 ANP32CO43423 234 aa23.83■■□□□ 1.41
COL27A1-201ENST00000356083 STAG3Q9UJ98 1225 aa23.79■■□□□ 1.4
COL27A1-201ENST00000356083 CHGAP10645 457 aaKnown RBP23.74■■□□□ 1.39
COL27A1-201ENST00000356083 NCBP3Q53F19 620 aaKnown RBP23.73■■□□□ 1.39
COL27A1-201ENST00000356083 PABPN1Q86U42 306 aaKnown RBP eCLIP23.73■■□□□ 1.391e-9■■■■■ 45.6
COL27A1-201ENST00000356083 ANP32AP39687 249 aaKnown RBP23.69■■□□□ 1.38
COL27A1-201ENST00000356083 SALL2Q9Y467 1007 aaPredicted RBP23.64■■□□□ 1.38
COL27A1-201ENST00000356083 ZBTB7CA1YPR0 619 aa23.6■■□□□ 1.37
COL27A1-201ENST00000356083 ZNF777Q9ULD5 760 aaPredicted RBP23.58■■□□□ 1.37
COL27A1-201ENST00000356083 P3H3Q8IVL6 736 aa23.57■■□□□ 1.36
COL27A1-201ENST00000356083 GTF3C3Q9Y5Q9 886 aa23.52■■□□□ 1.36
COL27A1-201ENST00000356083 UPF2Q9HAU5 1272 aaKnown RBP23.49■■□□□ 1.35
COL27A1-201ENST00000356083 C14orf37Q86TY3 774 aa23.41■■□□□ 1.34
COL27A1-201ENST00000356083 TPRNQ4KMQ1 711 aa23.41■■□□□ 1.34
COL27A1-201ENST00000356083 TAOK2Q9UL54 1235 aa23.4■■□□□ 1.34
COL27A1-201ENST00000356083 NBR1Q14596 966 aa23.38■■□□□ 1.33
COL27A1-201ENST00000356083 GLIPR1L2Q4G1C9 344 aa23.3■■□□□ 1.32
COL27A1-201ENST00000356083 HAP1P54257 671 aaPredicted RBP23.25■■□□□ 1.31
COL27A1-201ENST00000356083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.22■■□□□ 1.319e-9■■□□□ 12.1
COL27A1-201ENST00000356083 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
COL27A1-201ENST00000356083 NPHP1O15259 732 aa23.22■■□□□ 1.31
COL27A1-201ENST00000356083 FKBP8Q14318 412 aa23.12■■□□□ 1.29
COL27A1-201ENST00000356083 NPM1P06748 294 aaKnown RBP eCLIP23.11■■□□□ 1.29
COL27A1-201ENST00000356083 ABCC9O60706 1549 aa23.1■■□□□ 1.29
COL27A1-201ENST00000356083 SENP3-EIF4A1A0A087X0R7 540 aa23.09■■□□□ 1.29
COL27A1-201ENST00000356083 MYH16Q9H6N6 1097 aa23.09■■□□□ 1.29
COL27A1-201ENST00000356083 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.08■■□□□ 1.29
COL27A1-201ENST00000356083 CLSTN1O94985 981 aa23.07■■□□□ 1.28
COL27A1-201ENST00000356083 HNRNPUQ00839 825 aaKnown RBP eCLIP23.05■■□□□ 1.281e-6■■□□□ 13.5
COL27A1-201ENST00000356083 ZRSR1Q15695 479 aaKnown RBP23.03■■□□□ 1.28
COL27A1-201ENST00000356083 KDM2AQ9Y2K7 1162 aa23.02■■□□□ 1.28
COL27A1-201ENST00000356083 WDR43Q15061 677 aaKnown RBP eCLIP23.02■■□□□ 1.287e-7■■□□□ 12.1
COL27A1-201ENST00000356083 TMC1Q8TDI8 760 aa23■■□□□ 1.27
COL27A1-201ENST00000356083 NCLP19338 710 aaKnown RBP23■■□□□ 1.27
COL27A1-201ENST00000356083 CCDC136Q96JN2 1154 aa22.97■■□□□ 1.27
COL27A1-201ENST00000356083 DNTTIP2Q5QJE6 756 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms