RNA–Protein interactions for RNA: ENST00000480058.5

PRPF4B-205, Transcript of pre-mRNA processing factor 4B, humanhuman

TSL 1 (best)

Gene PRPF4B, Length 6,775 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4B-205ENST00000480058 PELP1Q8IZL8 1130 aaKnown RBP9.96□□□□□ -0.82
PRPF4B-205ENST00000480058 NISCHQ9Y2I1 1504 aa9.93□□□□□ -0.82
PRPF4B-205ENST00000480058 DCAF8L2P0C7V8 631 aa9.89□□□□□ -0.83
PRPF4B-205ENST00000480058 MYT1Q01538 1121 aa9.78□□□□□ -0.84
PRPF4B-205ENST00000480058 SUPT5HO00267 1087 aaKnown RBP9.73□□□□□ -0.85
PRPF4B-205ENST00000480058 ZEB1P37275 1124 aaPredicted RBP9.68□□□□□ -0.86
PRPF4B-205ENST00000480058 CENPBP07199 599 aaPredicted RBP9.56□□□□□ -0.88
PRPF4B-205ENST00000480058 APLP2Q06481 763 aa9.5□□□□□ -0.89
PRPF4B-205ENST00000480058 CCER1Q8TC90 406 aaPredicted RBP9.46□□□□□ -0.89
PRPF4B-205ENST00000480058 PCGF6Q9BYE7 350 aa9.33□□□□□ -0.92
PRPF4B-205ENST00000480058 FAM9AQ8IZU1 332 aaPredicted RBP9.31□□□□□ -0.92
PRPF4B-205ENST00000480058 SHROOM4Q9ULL8 1493 aa9.3□□□□□ -0.92
PRPF4B-205ENST00000480058 ERICH6Q7L0X2 663 aa9.22□□□□□ -0.93
PRPF4B-205ENST00000480058 NEFLP07196 543 aa9.21□□□□□ -0.94
PRPF4B-205ENST00000480058 HRCP23327 699 aa9.2□□□□□ -0.94
PRPF4B-205ENST00000480058 TRIM41Q8WV44 630 aa9.19□□□□□ -0.94
PRPF4B-205ENST00000480058 TRIM26Q12899 539 aaPredicted RBP9.18□□□□□ -0.94
PRPF4B-205ENST00000480058 YTHDC1Q96MU7 727 aaKnown RBP9.02□□□□□ -0.96
PRPF4B-205ENST00000480058 UBTFP17480 764 aaKnown RBP8.99□□□□□ -0.97
PRPF4B-205ENST00000480058 CHIC1Q5VXU3 224 aa8.97□□□□□ -0.97
PRPF4B-205ENST00000480058 EHMT2Q96KQ7 1210 aa8.95□□□□□ -0.98
PRPF4B-205ENST00000480058 TTBK1Q5TCY1 1321 aaPredicted RBP8.94□□□□□ -0.98
PRPF4B-205ENST00000480058 CLSPNQ9HAW4 1339 aa8.93□□□□□ -0.98
PRPF4B-205ENST00000480058 DAXXQ9UER7 740 aaPredicted RBP8.85□□□□□ -0.99
PRPF4B-205ENST00000480058 DIEXFQ68CQ4 756 aaKnown RBP8.8□□□□□ -1
PRPF4B-205ENST00000480058 RTL5Q5HYW3 569 aaPredicted RBP8.79□□□□□ -1
PRPF4B-205ENST00000480058 MYT1LQ9UL68 1186 aa8.79□□□□□ -1
PRPF4B-205ENST00000480058 ATP1B4Q9UN42 357 aaPredicted RBP8.69□□□□□ -1.02
PRPF4B-205ENST00000480058 ACIN1Q9UKV3 1341 aaKnown RBP8.67□□□□□ -1.02
PRPF4B-205ENST00000480058 ZNF316A6NFI3 1004 aaPredicted RBP8.66□□□□□ -1.02
PRPF4B-205ENST00000480058 LOC105371045A0A1W2PR82 267 aa8.66□□□□□ -1.02
PRPF4B-205ENST00000480058 RANGAP1P46060 587 aaPredicted RBP8.63□□□□□ -1.03
PRPF4B-205ENST00000480058 HNRNPUL2Q1KMD3 747 aaKnown RBP8.63□□□□□ -1.03
PRPF4B-205ENST00000480058 CDK11AQ9UQ88 783 aaPredicted RBP8.62□□□□□ -1.03
PRPF4B-205ENST00000480058 GTF3C3Q9Y5Q9 886 aa8.62□□□□□ -1.03
PRPF4B-205ENST00000480058 ANP32CO43423 234 aa8.6□□□□□ -1.03
PRPF4B-205ENST00000480058 DCAF1Q9Y4B6 1507 aa8.59□□□□□ -1.03
PRPF4B-205ENST00000480058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.58□□□□□ -1.04
PRPF4B-205ENST00000480058 PPARGC1BQ86YN6 1023 aaKnown RBP8.56□□□□□ -1.04
PRPF4B-205ENST00000480058 CSRNP3Q8WYN3 585 aa8.52□□□□□ -1.05
PRPF4B-205ENST00000480058 ITGAEP38570 1179 aa8.51□□□□□ -1.05
PRPF4B-205ENST00000480058 ANP32AP39687 249 aaKnown RBP8.5□□□□□ -1.05
PRPF4B-205ENST00000480058 GLIPR1L2Q4G1C9 344 aa8.45□□□□□ -1.06
PRPF4B-205ENST00000480058 POLR3GLQ9BT43 218 aa8.43□□□□□ -1.06
PRPF4B-205ENST00000480058 ZBTB47Q9UFB7 747 aaPredicted RBP8.42□□□□□ -1.06
PRPF4B-205ENST00000480058 FAM50AQ14320 339 aaKnown RBP8.4□□□□□ -1.06
PRPF4B-205ENST00000480058 ANP32EQ9BTT0 268 aa8.4□□□□□ -1.06
PRPF4B-205ENST00000480058 EEA1Q15075 1411 aa8.4□□□□□ -1.06
PRPF4B-205ENST00000480058 TRIM52Q96A61 297 aa8.38□□□□□ -1.07
PRPF4B-205ENST00000480058 ANP32BQ92688 251 aaKnown RBP8.38□□□□□ -1.07
PRPF4B-205ENST00000480058 NEFMP07197 916 aa8.35□□□□□ -1.07
PRPF4B-205ENST00000480058 UPF2Q9HAU5 1272 aaKnown RBP8.35□□□□□ -1.07
PRPF4B-205ENST00000480058 TIMELESSQ9UNS1 1208 aa8.34□□□□□ -1.07
PRPF4B-205ENST00000480058 TONSLQ96HA7 1378 aa8.34□□□□□ -1.07
PRPF4B-205ENST00000480058 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.33□□□□□ -1.08
PRPF4B-205ENST00000480058 NEUROD1Q13562 356 aa8.32□□□□□ -1.08
PRPF4B-205ENST00000480058 EIF5BO60841 1220 aaKnown RBP8.32□□□□□ -1.08
PRPF4B-205ENST00000480058 BCANQ96GW7 911 aa8.31□□□□□ -1.08
PRPF4B-205ENST00000480058 FKBP8Q14318 412 aa8.29□□□□□ -1.08
PRPF4B-205ENST00000480058 ERICH6BQ5W0A0 696 aa8.29□□□□□ -1.08
PRPF4B-205ENST00000480058 CANXP27824 592 aaKnown RBP8.27□□□□□ -1.09
PRPF4B-205ENST00000480058 HNRNPUQ00839 825 aaKnown RBP eCLIP8.27□□□□□ -1.09
PRPF4B-205ENST00000480058 ZCCHC6Q5VYS8 1495 aaKnown RBP8.26□□□□□ -1.09
PRPF4B-205ENST00000480058 PPM1GO15355 546 aaPredicted RBP8.26□□□□□ -1.09
PRPF4B-205ENST00000480058 CCDC136Q96JN2 1154 aa8.26□□□□□ -1.09
PRPF4B-205ENST00000480058 DDRGK1Q96HY6 314 aa8.25□□□□□ -1.09
PRPF4B-205ENST00000480058 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
PRPF4B-205ENST00000480058 SLC24A1O60721 1099 aa8.21□□□□□ -1.09
PRPF4B-205ENST00000480058 TMC1Q8TDI8 760 aa8.2□□□□□ -1.1
PRPF4B-205ENST00000480058 SLC4A1APQ9BWU0 796 aaKnown RBP8.2□□□□□ -1.1
PRPF4B-205ENST00000480058 EIF4G2P78344 907 aaKnown RBP eCLIP8.2□□□□□ -1.1
PRPF4B-205ENST00000480058 DDX10Q13206 875 aaKnown RBP8.2□□□□□ -1.1
PRPF4B-205ENST00000480058 BECN1Q14457 450 aa8.2□□□□□ -1.1
PRPF4B-205ENST00000480058 HSP90AA1P07900 732 aaKnown RBP8.19□□□□□ -1.1
PRPF4B-205ENST00000480058 MRS2Q9HD23 443 aa8.18□□□□□ -1.1
PRPF4B-205ENST00000480058 ZNF326Q5BKZ1 582 aaKnown RBP8.18□□□□□ -1.1
PRPF4B-205ENST00000480058 TNIKQ9UKE5 1360 aa8.18□□□□□ -1.1
PRPF4B-205ENST00000480058 CLIP1P30622 1438 aa8.18□□□□□ -1.1
PRPF4B-205ENST00000480058 CNGB1Q14028 1251 aaPredicted RBP8.18□□□□□ -1.1
PRPF4B-205ENST00000480058 MIER1Q8N108 512 aa8.16□□□□□ -1.1
PRPF4B-205ENST00000480058 CCER2I3L3R5 266 aa8.16□□□□□ -1.1
PRPF4B-205ENST00000480058 CDCA8Q53HL2 280 aa8.16□□□□□ -1.1
PRPF4B-205ENST00000480058 PPP4R2Q9NY27 417 aa8.15□□□□□ -1.1
PRPF4B-205ENST00000480058 GOLGA6L22H0YM25 854 aa8.15□□□□□ -1.1
PRPF4B-205ENST00000480058 RSF1Q96T23 1441 aaPredicted RBP8.15□□□□□ -1.1
PRPF4B-205ENST00000480058 CHMP4BQ9H444 224 aaKnown RBP8.14□□□□□ -1.11
PRPF4B-205ENST00000480058 TSPY4P0CV99 314 aa8.13□□□□□ -1.11
PRPF4B-205ENST00000480058 TSPY10P0CW01 314 aa8.13□□□□□ -1.11
PRPF4B-205ENST00000480058 GOLGA3Q08378 1498 aa8.12□□□□□ -1.11
PRPF4B-205ENST00000480058 TNNT2P45379 298 aaPredicted RBP8.12□□□□□ -1.11
PRPF4B-205ENST00000480058 NPM2Q86SE8 214 aaKnown RBP8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 ARID4BQ4LE39 1312 aaPredicted RBP8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 MTUS2Q5JR59 1369 aa8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 MS4A1P11836 297 aa8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 WDR43Q15061 677 aaKnown RBP eCLIP8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 FAM9BQ8IZU0 186 aa8.11□□□□□ -1.11
PRPF4B-205ENST00000480058 CFAP44Q96MT7 982 aa8.1□□□□□ -1.11
PRPF4B-205ENST00000480058 CCDC180Q9P1Z9 1646 aa8.09□□□□□ -1.11
PRPF4B-205ENST00000480058 TRIM44Q96DX7 344 aaPredicted RBP8.09□□□□□ -1.11
PRPF4B-205ENST00000480058 CEP162Q5TB80 1403 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms