RNA–Protein interactions for RNA: ENST00000457109.5

PKP4-207, Transcript of plakophilin 4, humanhuman

TSL 3

Gene PKP4, Length 520 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-207ENST00000457109 NISCHQ9Y2I1 1504 aa21.62■■□□□ 1.05
PKP4-207ENST00000457109 ABCC9O60706 1549 aa19.44■□□□□ 0.7
PKP4-207ENST00000457109 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
PKP4-207ENST00000457109 DCAF8L2P0C7V8 631 aa18.56■□□□□ 0.56
PKP4-207ENST00000457109 RB1CC1Q8TDY2 1594 aa18.47■□□□□ 0.55
PKP4-207ENST00000457109 NACADO15069 1562 aa18.34■□□□□ 0.53
PKP4-207ENST00000457109 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
PKP4-207ENST00000457109 PABPN1Q86U42 306 aaKnown RBP eCLIP18.2■□□□□ 0.5
PKP4-207ENST00000457109 MYO15BQ96JP2 1530 aa18.08■□□□□ 0.48
PKP4-207ENST00000457109 ZCCHC6Q5VYS8 1495 aaKnown RBP17.88■□□□□ 0.45
PKP4-207ENST00000457109 DCAF1Q9Y4B6 1507 aa17.83■□□□□ 0.45
PKP4-207ENST00000457109 BICRAQ9NZM4 1560 aa17.8■□□□□ 0.44
PKP4-207ENST00000457109 UNC13AQ9UPW8 1703 aa17.8■□□□□ 0.44
PKP4-207ENST00000457109 SHROOM4Q9ULL8 1493 aa17.69■□□□□ 0.42
PKP4-207ENST00000457109 SCRIBQ14160 1630 aa17.65■□□□□ 0.42
PKP4-207ENST00000457109 CECR2Q9BXF3 1484 aa17.52■□□□□ 0.4
PKP4-207ENST00000457109 CC2D2AQ9P2K1 1620 aa17.47■□□□□ 0.39
PKP4-207ENST00000457109 EIF4G1Q04637 1599 aaKnown RBP17.45■□□□□ 0.38
PKP4-207ENST00000457109 NCAPD3P42695 1498 aa16.97■□□□□ 0.31
PKP4-207ENST00000457109 ATAD2BQ9ULI0 1458 aa16.9■□□□□ 0.3
PKP4-207ENST00000457109 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
PKP4-207ENST00000457109 SMARCA2P51531 1590 aa16.86■□□□□ 0.29
PKP4-207ENST00000457109 DNAJC5Q9H3Z4 198 aa16.82■□□□□ 0.28
PKP4-207ENST00000457109 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
PKP4-207ENST00000457109 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
PKP4-207ENST00000457109 BAZ1BQ9UIG0 1483 aaKnown RBP16.78■□□□□ 0.28
PKP4-207ENST00000457109 HMGXB3Q12766 1538 aa16.76■□□□□ 0.27
PKP4-207ENST00000457109 CUX2O14529 1486 aa16.74■□□□□ 0.27
PKP4-207ENST00000457109 NESP48681 1621 aa16.64■□□□□ 0.25
PKP4-207ENST00000457109 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
PKP4-207ENST00000457109 PEG3Q9GZU2 1588 aa16.63■□□□□ 0.25
PKP4-207ENST00000457109 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.24
PKP4-207ENST00000457109 LAMC3Q9Y6N6 1575 aa16.54■□□□□ 0.24
PKP4-207ENST00000457109 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
PKP4-207ENST00000457109 WIZO95785 1651 aa16.4■□□□□ 0.22
PKP4-207ENST00000457109 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
PKP4-207ENST00000457109 RSF1Q96T23 1441 aaPredicted RBP16.36■□□□□ 0.21
PKP4-207ENST00000457109 MRC2Q9UBG0 1479 aa16.35■□□□□ 0.21
PKP4-207ENST00000457109 KIF21AQ7Z4S6 1674 aa16.31■□□□□ 0.2
PKP4-207ENST00000457109 CEP164Q9UPV0 1460 aa16.3■□□□□ 0.2
PKP4-207ENST00000457109 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
PKP4-207ENST00000457109 CFTRP13569 1480 aa16.26■□□□□ 0.19
PKP4-207ENST00000457109 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
PKP4-207ENST00000457109 WDR62O43379 1518 aa16.22■□□□□ 0.19
PKP4-207ENST00000457109 OSCARQ8IYS5 282 aa16.16■□□□□ 0.18
PKP4-207ENST00000457109 TRIM41Q8WV44 630 aa16.16■□□□□ 0.18
PKP4-207ENST00000457109 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
PKP4-207ENST00000457109 URB2Q14146 1524 aaKnown RBP16.08■□□□□ 0.16
PKP4-207ENST00000457109 ABCC8Q09428 1581 aa16■□□□□ 0.15
PKP4-207ENST00000457109 IFT140Q96RY7 1462 aa15.99■□□□□ 0.15
PKP4-207ENST00000457109 TOPBP1Q92547 1522 aa15.94■□□□□ 0.14
PKP4-207ENST00000457109 FBLN2P98095 1184 aa15.9■□□□□ 0.14
PKP4-207ENST00000457109 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
PKP4-207ENST00000457109 PRDM2Q13029 1718 aa15.88■□□□□ 0.13
PKP4-207ENST00000457109 DNMBPQ6XZF7 1577 aa15.85■□□□□ 0.13
PKP4-207ENST00000457109 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
PKP4-207ENST00000457109 AQRO60306 1485 aaKnown RBP eCLIP15.82■□□□□ 0.121e-6■■□□□ 11.4
PKP4-207ENST00000457109 SOGA1O94964 1423 aa15.81■□□□□ 0.12
PKP4-207ENST00000457109 TDRD9Q8NDG6 1382 aaKnown RBP15.77■□□□□ 0.12
PKP4-207ENST00000457109 POLA1P09884 1462 aaPredicted RBP15.77■□□□□ 0.11
PKP4-207ENST00000457109 CYB5RLQ6IPT4 315 aa15.76■□□□□ 0.11
PKP4-207ENST00000457109 CHMP7Q8WUX9 453 aaPredicted RBP15.76■□□□□ 0.11
PKP4-207ENST00000457109 EIF4G3O43432 1585 aaKnown RBP15.74■□□□□ 0.11
PKP4-207ENST00000457109 RAD54L2Q9Y4B4 1467 aa15.73■□□□□ 0.11
PKP4-207ENST00000457109 TARBP1Q13395 1621 aaKnown RBP15.7■□□□□ 0.1
PKP4-207ENST00000457109 FGD5Q6ZNL6 1462 aa15.69■□□□□ 0.1
PKP4-207ENST00000457109 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
PKP4-207ENST00000457109 RIMBP3CA6NJZ7 1639 aa15.68■□□□□ 0.1
PKP4-207ENST00000457109 RIMBP3BA6NNM3 1639 aa15.68■□□□□ 0.1
PKP4-207ENST00000457109 RIMBP3Q9UFD9 1639 aa15.68■□□□□ 0.1
PKP4-207ENST00000457109 TRHP20396 242 aaPredicted RBP15.66■□□□□ 0.1
PKP4-207ENST00000457109 GRIN2BQ13224 1484 aa15.63■□□□□ 0.09
PKP4-207ENST00000457109 CUX1P39880 1505 aa15.63■□□□□ 0.09
PKP4-207ENST00000457109 SNAPC4Q5SXM2 1469 aa15.62■□□□□ 0.09
PKP4-207ENST00000457109 MAGI1Q96QZ7 1491 aaPredicted RBP15.59■□□□□ 0.09
PKP4-207ENST00000457109 WDR97A6NE52 1622 aa15.59■□□□□ 0.09
PKP4-207ENST00000457109 GAPVD1Q14C86 1478 aa15.57■□□□□ 0.08
PKP4-207ENST00000457109 CHD1O14646 1710 aa15.57■□□□□ 0.08
PKP4-207ENST00000457109 SYNJ2O15056 1496 aa15.55■□□□□ 0.08
PKP4-207ENST00000457109 WRNQ14191 1432 aaPredicted RBP eCLIP15.55■□□□□ 0.08
PKP4-207ENST00000457109 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
PKP4-207ENST00000457109 ARAP1Q96P48 1450 aa15.52■□□□□ 0.07
PKP4-207ENST00000457109 ABCA10Q8WWZ4 1543 aa15.51■□□□□ 0.07
PKP4-207ENST00000457109 CLASP1Q7Z460 1538 aa15.44■□□□□ 0.06
PKP4-207ENST00000457109 FHAD1B1AJZ9 1412 aa15.39■□□□□ 0.05
PKP4-207ENST00000457109 GRIN2AQ12879 1464 aa15.38■□□□□ 0.05
PKP4-207ENST00000457109 PBRM1Q86U86 1689 aa15.38■□□□□ 0.05
PKP4-207ENST00000457109 TOP2BQ02880 1626 aa15.37■□□□□ 0.05
PKP4-207ENST00000457109 ABCA5Q8WWZ7 1642 aa15.37■□□□□ 0.05
PKP4-207ENST00000457109 JPH4Q96JJ6 628 aa15.33■□□□□ 0.04
PKP4-207ENST00000457109 ERICH3Q5RHP9 1530 aa15.32■□□□□ 0.04
PKP4-207ENST00000457109 BIVM-ERCC5R4GMW8 1640 aa15.32■□□□□ 0.04
PKP4-207ENST00000457109 NUP160Q12769 1436 aa15.31■□□□□ 0.04
PKP4-207ENST00000457109 NPM1P06748 294 aaKnown RBP eCLIP15.29■□□□□ 0.04
PKP4-207ENST00000457109 ADAMTS12P58397 1594 aa15.28■□□□□ 0.04
PKP4-207ENST00000457109 PRG4Q92954 1404 aaPredicted RBP15.26■□□□□ 0.03
PKP4-207ENST00000457109 CEP170Q5SW79 1584 aa15.24■□□□□ 0.03
PKP4-207ENST00000457109 AEBP2Q6ZN18 517 aaPredicted RBP15.24■□□□□ 0.03
PKP4-207ENST00000457109 KIF27Q86VH2 1401 aa15.23■□□□□ 0.03
PKP4-207ENST00000457109 IGF1RP08069 1367 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms