RNA–Protein interactions for RNA: ENST00000479398.5

PKP4-209, Transcript of plakophilin 4, humanhuman

TSL 5

Gene PKP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-209ENST00000479398 NISCHQ9Y2I1 1504 aa50.52■■■■■ 5.68
PKP4-209ENST00000479398 CCDC180Q9P1Z9 1646 aa44.92■■■■■ 4.78
PKP4-209ENST00000479398 ABCC9O60706 1549 aa44.2■■■■■ 4.67
PKP4-209ENST00000479398 DCAF8L2P0C7V8 631 aa42.42■■■■■ 4.38
PKP4-209ENST00000479398 RB1CC1Q8TDY2 1594 aa42.41■■■■■ 4.38
PKP4-209ENST00000479398 NACADO15069 1562 aa42.34■■■■■ 4.37
PKP4-209ENST00000479398 MYO15BQ96JP2 1530 aa42.01■■■■■ 4.32
PKP4-209ENST00000479398 ZCCHC6Q5VYS8 1495 aaKnown RBP41.99■■■■■ 4.31
PKP4-209ENST00000479398 DCAF1Q9Y4B6 1507 aa41.77■■■■■ 4.28
PKP4-209ENST00000479398 UNC13AQ9UPW8 1703 aa41.44■■■■■ 4.22
PKP4-209ENST00000479398 PABPN1Q86U42 306 aaKnown RBP eCLIP41.36■■■■■ 4.21
PKP4-209ENST00000479398 BICRAQ9NZM4 1560 aa41.15■■■■■ 4.18
PKP4-209ENST00000479398 SCRIBQ14160 1630 aa40.99■■■■■ 4.15
PKP4-209ENST00000479398 DNAJC5BQ9UF47 199 aa40.85■■■■■ 4.13
PKP4-209ENST00000479398 SHROOM4Q9ULL8 1493 aa40.64■■■■■ 4.1
PKP4-209ENST00000479398 EIF4G1Q04637 1599 aaKnown RBP40.06■■■■■ 4
PKP4-209ENST00000479398 CC2D2AQ9P2K1 1620 aa39.96■■■■□ 3.99
PKP4-209ENST00000479398 CECR2Q9BXF3 1484 aa39.74■■■■□ 3.95
PKP4-209ENST00000479398 SMARCA4P51532 1647 aa39.2■■■■□ 3.87
PKP4-209ENST00000479398 BAZ1AQ9NRL2 1556 aaPredicted RBP39.14■■■■□ 3.86
PKP4-209ENST00000479398 NCAPD3P42695 1498 aa39.11■■■■□ 3.85
PKP4-209ENST00000479398 ATAD2BQ9ULI0 1458 aa39.08■■■■□ 3.85
PKP4-209ENST00000479398 SMARCA2P51531 1590 aa38.99■■■■□ 3.83
PKP4-209ENST00000479398 MROH2BQ7Z745 1585 aa38.93■■■■□ 3.82
PKP4-209ENST00000479398 PEG3Q9GZU2 1588 aa38.82■■■■□ 3.81
PKP4-209ENST00000479398 HMGXB3Q12766 1538 aa38.81■■■■□ 3.8
PKP4-209ENST00000479398 BAZ1BQ9UIG0 1483 aaKnown RBP38.72■■■■□ 3.79
PKP4-209ENST00000479398 WIZO95785 1651 aa38.5■■■■□ 3.75
PKP4-209ENST00000479398 RSF1Q96T23 1441 aaPredicted RBP38.45■■■■□ 3.75
PKP4-209ENST00000479398 NESP48681 1621 aa38.2■■■■□ 3.71
PKP4-209ENST00000479398 ERCC6Q03468 1493 aa38.09■■■■□ 3.69
PKP4-209ENST00000479398 LAMC3Q9Y6N6 1575 aa38.06■■■■□ 3.68
PKP4-209ENST00000479398 TOP2AP11388 1531 aaKnown RBP38.04■■■■□ 3.68
PKP4-209ENST00000479398 CADPSQ9ULU8 1353 aa37.96■■■■□ 3.67
PKP4-209ENST00000479398 PDS5BQ9NTI5 1447 aa37.85■■■■□ 3.65
PKP4-209ENST00000479398 CUX2O14529 1486 aa37.75■■■■□ 3.63
PKP4-209ENST00000479398 KIF21AQ7Z4S6 1674 aa37.7■■■■□ 3.63
PKP4-209ENST00000479398 CFTRP13569 1480 aa37.67■■■■□ 3.62
PKP4-209ENST00000479398 CCDC88BA6NC98 1476 aa37.66■■■■□ 3.62
PKP4-209ENST00000479398 THOC2Q8NI27 1593 aaKnown RBP37.59■■■■□ 3.61
PKP4-209ENST00000479398 FANCD2Q9BXW9 1451 aa37.49■■■■□ 3.59
PKP4-209ENST00000479398 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
PKP4-209ENST00000479398 MRC2Q9UBG0 1479 aa37.43■■■■□ 3.58
PKP4-209ENST00000479398 SUPT5HO00267 1087 aaKnown RBP37.41■■■■□ 3.58
PKP4-209ENST00000479398 PRDM2Q13029 1718 aa37.3■■■■□ 3.56
PKP4-209ENST00000479398 WDR62O43379 1518 aa37.29■■■■□ 3.56
PKP4-209ENST00000479398 URB2Q14146 1524 aaKnown RBP37.12■■■■□ 3.53
PKP4-209ENST00000479398 DNAJC5Q9H3Z4 198 aa36.93■■■■□ 3.5
PKP4-209ENST00000479398 ABCC8Q09428 1581 aa36.89■■■■□ 3.5
PKP4-209ENST00000479398 TOPBP1Q92547 1522 aa36.87■■■■□ 3.49
PKP4-209ENST00000479398 DNMBPQ6XZF7 1577 aa36.78■■■■□ 3.48
PKP4-209ENST00000479398 IFT140Q96RY7 1462 aa36.69■■■■□ 3.46
PKP4-209ENST00000479398 ZNF608Q9ULD9 1512 aaPredicted RBP36.54■■■■□ 3.44
PKP4-209ENST00000479398 POLA1P09884 1462 aaPredicted RBP36.53■■■■□ 3.44
PKP4-209ENST00000479398 CUX1P39880 1505 aa36.52■■■■□ 3.44
PKP4-209ENST00000479398 TARBP1Q13395 1621 aaKnown RBP36.47■■■■□ 3.43
PKP4-209ENST00000479398 SOGA1O94964 1423 aa36.45■■■■□ 3.43
PKP4-209ENST00000479398 FGD5Q6ZNL6 1462 aa36.43■■■■□ 3.42
PKP4-209ENST00000479398 RAD54L2Q9Y4B4 1467 aa36.42■■■■□ 3.42
PKP4-209ENST00000479398 AQRO60306 1485 aaKnown RBP eCLIP36.35■■■■□ 3.41
PKP4-209ENST00000479398 EIF4G3O43432 1585 aaKnown RBP36.32■■■■□ 3.41
PKP4-209ENST00000479398 OSCARQ8IYS5 282 aa36.28■■■■□ 3.4
PKP4-209ENST00000479398 TDRD9Q8NDG6 1382 aaKnown RBP36.27■■■■□ 3.4
PKP4-209ENST00000479398 WRNQ14191 1432 aaPredicted RBP eCLIP36.24■■■■□ 3.39
PKP4-209ENST00000479398 TOP2BQ02880 1626 aa36.14■■■■□ 3.38
PKP4-209ENST00000479398 WDR97A6NE52 1622 aa36.13■■■■□ 3.37
PKP4-209ENST00000479398 BIVM-ERCC5R4GMW8 1640 aa36.13■■■■□ 3.37
PKP4-209ENST00000479398 SYNJ1O43426 1573 aa36.11■■■■□ 3.37
PKP4-209ENST00000479398 ABCA10Q8WWZ4 1543 aa36.06■■■■□ 3.36
PKP4-209ENST00000479398 FBLN2P98095 1184 aa36■■■■□ 3.35
PKP4-209ENST00000479398 GRIN2BQ13224 1484 aa35.99■■■■□ 3.35
PKP4-209ENST00000479398 GAPVD1Q14C86 1478 aa35.99■■■■□ 3.35
PKP4-209ENST00000479398 SNAPC4Q5SXM2 1469 aa35.94■■■■□ 3.34
PKP4-209ENST00000479398 CHD1O14646 1710 aa35.92■■■■□ 3.34
PKP4-209ENST00000479398 MAGI1Q96QZ7 1491 aaPredicted RBP35.9■■■■□ 3.34
PKP4-209ENST00000479398 ABCA5Q8WWZ7 1642 aa35.9■■■■□ 3.34
PKP4-209ENST00000479398 CHMP7Q8WUX9 453 aaPredicted RBP35.87■■■■□ 3.33
PKP4-209ENST00000479398 PBRM1Q86U86 1689 aa35.86■■■■□ 3.33
PKP4-209ENST00000479398 SYNJ2O15056 1496 aa35.77■■■■□ 3.32
PKP4-209ENST00000479398 ERICH3Q5RHP9 1530 aa35.62■■■■□ 3.29
PKP4-209ENST00000479398 TRIM41Q8WV44 630 aa35.62■■■■□ 3.29
PKP4-209ENST00000479398 RIMBP3CA6NJZ7 1639 aa35.6■■■■□ 3.29
PKP4-209ENST00000479398 RIMBP3BA6NNM3 1639 aa35.6■■■■□ 3.29
PKP4-209ENST00000479398 RIMBP3Q9UFD9 1639 aa35.6■■■■□ 3.29
PKP4-209ENST00000479398 ARHGEF11O15085 1522 aa35.57■■■■□ 3.28
PKP4-209ENST00000479398 FHAD1B1AJZ9 1412 aa35.57■■■■□ 3.28
PKP4-209ENST00000479398 ADAMTS12P58397 1594 aa35.55■■■■□ 3.28
PKP4-209ENST00000479398 CLASP1Q7Z460 1538 aa35.53■■■■□ 3.28
PKP4-209ENST00000479398 GRIN2AQ12879 1464 aa35.52■■■■□ 3.28
PKP4-209ENST00000479398 KIF27Q86VH2 1401 aa35.51■■■■□ 3.28
PKP4-209ENST00000479398 IGF1RP08069 1367 aa35.44■■■■□ 3.26
PKP4-209ENST00000479398 CYB5RLQ6IPT4 315 aa35.38■■■■□ 3.25
PKP4-209ENST00000479398 NUP160Q12769 1436 aa35.38■■■■□ 3.25
PKP4-209ENST00000479398 CEP170Q5SW79 1584 aa35.34■■■■□ 3.25
PKP4-209ENST00000479398 ARAP1Q96P48 1450 aa35.27■■■■□ 3.24
PKP4-209ENST00000479398 CUL7Q14999 1698 aa35.24■■■■□ 3.23
PKP4-209ENST00000479398 CARMIL1Q5VZK9 1371 aa35.21■■■■□ 3.23
PKP4-209ENST00000479398 RUSC2Q8N2Y8 1516 aa35.16■■■■□ 3.22
PKP4-209ENST00000479398 JPH4Q96JJ6 628 aa35.13■■■■□ 3.21
PKP4-209ENST00000479398 SHROOM2Q13796 1616 aa35.1■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms