Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.99□□□□□ -0.978e-6■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.018e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC8.67□□□□□ -1.028e-6■■□□□ 11.7
DDX55Q8NHQ9 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC8.09□□□□□ -1.118e-6■■□□□ 11.7
DDX55Q8NHQ9 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC8.02□□□□□ -1.128e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-210ENST00000475697 3375 ntTSL 27.57□□□□□ -1.28e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-215ENST00000495776 2831 ntTSL 27.18□□□□□ -1.268e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.96□□□□□ -1.38e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.91□□□□□ -1.38e-6■■□□□ 11.7
DDX55Q8NHQ9 AC099329.1-201ENST00000625589 539 ntTSL 56.9□□□□□ -1.38e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.348e-6■■□□□ 11.7
DDX55Q8NHQ9 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.378e-6■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-218ENST00000493867 677 ntTSL 36.05□□□□□ -1.448e-6■■□□□ 11.7
DDX55Q8NHQ9 IDH1-209ENST00000484575 1044 ntTSL 25.93□□□□□ -1.468e-6■■□□□ 11.7
DDX55Q8NHQ9 MTCH2-206ENST00000539759 581 ntTSL 55.77□□□□□ -1.498e-6■■□□□ 11.7
DDX55Q8NHQ9 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.69□□□□□ -1.58e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-221ENST00000531819 4520 ntTSL 25.51□□□□□ -1.538e-6■■□□□ 11.7
DDX55Q8NHQ9 MTCH2-205ENST00000534074 811 ntTSL 25.21□□□□□ -1.588e-6■■□□□ 11.7
DDX55Q8NHQ9 MTCH2-202ENST00000525649 599 ntTSL 25.13□□□□□ -1.598e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-227ENST00000625138 863 ntTSL 55.1□□□□□ -1.598e-6■■□□□ 11.7
DDX55Q8NHQ9 XRCC5-210ENST00000493706 564 ntTSL 24.53□□□□□ -1.688e-6■■□□□ 11.7
DDX55Q8NHQ9 TROAP-215ENST00000551245 2771 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.311e-6■■□□□ 11.7
DDX55Q8NHQ9 TROAP-201ENST00000257909 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.471e-6■■□□□ 11.7
DDX55Q8NHQ9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.143e-7■■□□□ 11.7
DDX55Q8NHQ9 TNS3-201ENST00000311160 7618 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.491e-9■■□□□ 11.7
DDX55Q8NHQ9 TNS3-204ENST00000428457 5070 ntTSL 1 (best)10.98□□□□□ -0.651e-9■■□□□ 11.7
DDX55Q8NHQ9 UBE2G2-206ENST00000481546 4340 ntTSL 1 (best)9.81□□□□□ -0.843e-7■■□□□ 11.7
DDX55Q8NHQ9 USF2-216ENST00000607959 1920 ntTSL 525.21■■□□□ 1.633e-8■■□□□ 11.7
DDX55Q8NHQ9 USF2-213ENST00000600341 1392 ntTSL 221.68■■□□□ 1.063e-8■■□□□ 11.7
DDX55Q8NHQ9 USF2-206ENST00000594264 2742 ntTSL 215.91■□□□□ 0.143e-8■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.24■■■□□ 2.111e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.851e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.8■■□□□ 1.721e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-203ENST00000495706 1859 ntTSL 325.67■■□□□ 1.71e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC24.04■■□□□ 1.441e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.2■□□□□ 0.981e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.97■□□□□ 0.311e-6■■□□□ 11.7
DDX55Q8NHQ9 CHID1-212ENST00000528426 991 ntTSL 534.9■■■■□ 3.181e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-217ENST00000530939 571 ntTSL 432.57■■■□□ 2.81e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.171e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.54■□□□□ 0.721e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC17.49■□□□□ 0.391e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-224ENST00000534254 1019 ntTSL 517.02■□□□□ 0.321e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-222ENST00000533059 578 ntTSL 316.72■□□□□ 0.271e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.241e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-211ENST00000528154 594 ntTSL 416.16■□□□□ 0.181e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-219ENST00000531859 834 ntTSL 516.03■□□□□ 0.161e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-208ENST00000525225 523 ntTSL 514.13□□□□□ -0.151e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-205ENST00000454838 3255 ntTSL 5 BASIC13.05□□□□□ -0.321e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-210ENST00000526714 976 ntTSL 512.49□□□□□ -0.411e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-204ENST00000449825 3537 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.451e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-209ENST00000525840 438 ntTSL 311.38□□□□□ -0.591e-7■■□□□ 11.7
DDX55Q8NHQ9 CHID1-221ENST00000533056 752 ntTSL 311.19□□□□□ -0.621e-7■■□□□ 11.7
DDX55Q8NHQ9 SLC2A1-208ENST00000630287 2398 ntTSL 516.23■□□□□ 0.191e-38■■□□□ 11.7
DDX55Q8NHQ9 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.361e-38■■□□□ 11.7
DDX55Q8NHQ9 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.174e-9■■□□□ 11.7
DDX55Q8NHQ9 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.234e-9■■□□□ 11.7
DDX55Q8NHQ9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.094e-10■■□□□ 11.7
DDX55Q8NHQ9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.894e-10■■□□□ 11.7
DDX55Q8NHQ9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.674e-10■■□□□ 11.7
DDX55Q8NHQ9 ABHD14B-207ENST00000487005 1998 ntTSL 219.1■□□□□ 0.654e-10■■□□□ 11.7
DDX55Q8NHQ9 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.6■□□□□ 0.574e-10■■□□□ 11.7
DDX55Q8NHQ9 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.4■□□□□ 0.224e-10■■□□□ 11.7
DDX55Q8NHQ9 PCBP4-213ENST00000489595 539 ntTSL 414.69□□□□□ -0.064e-10■■□□□ 11.7
DDX55Q8NHQ9 TGFBI-211ENST00000513497 588 ntTSL 214.62□□□□□ -0.078e-7■■□□□ 11.7
DDX55Q8NHQ9 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.041e-6■■□□□ 11.7
DDX55Q8NHQ9 PLS3-206ENST00000481823 2858 ntTSL 25.87□□□□□ -1.471e-6■■□□□ 11.7
DDX55Q8NHQ9 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.641e-6■■□□□ 11.7
DDX55Q8NHQ9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.69□□□□□ -1.661e-6■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-205ENST00000585913 833 ntTSL 326.67■■□□□ 1.863e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC26.31■■□□□ 1.83e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC25.11■■□□□ 1.613e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-210ENST00000586636 938 ntTSL 222.84■■□□□ 1.253e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-237ENST00000592234 571 ntTSL 522.84■■□□□ 1.253e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-232ENST00000591376 830 ntTSL 322.84■■□□□ 1.253e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.033e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-203ENST00000444172 584 ntTSL 321.35■■□□□ 1.013e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-206ENST00000585914 1052 ntTSL 521.22■□□□□ 0.993e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-212ENST00000587169 3028 ntTSL 217.23■□□□□ 0.353e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-228ENST00000590347 3117 ntTSL 215.97■□□□□ 0.153e-8■■□□□ 11.7
DDX55Q8NHQ9 CIRBP-242ENST00000593093 3528 ntTSL 214.9□□□□□ -0.023e-8■■□□□ 11.7
DDX55Q8NHQ9 SUN1-222ENST00000457861 2975 ntTSL 216.59■□□□□ 0.258e-8■■□□□ 11.7
DDX55Q8NHQ9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC36.23■■■■□ 3.392e-9■■□□□ 11.7
DDX55Q8NHQ9 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC34.71■■■■□ 3.152e-9■■□□□ 11.7
DDX55Q8NHQ9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.972e-9■■□□□ 11.7
DDX55Q8NHQ9 MYL6-217ENST00000550639 419 ntTSL 511.46□□□□□ -0.572e-19■■□□□ 11.7
DDX55Q8NHQ9 ITM2B-202ENST00000378565 10137 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.333e-18■■□□□ 11.7
DDX55Q8NHQ9 ITM2B-203ENST00000463839 810 ntTSL 35.24□□□□□ -1.573e-18■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-206ENST00000553529 562 ntTSL 422.51■■□□□ 1.198e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-204ENST00000553324 566 ntTSL 418.69■□□□□ 0.588e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-235ENST00000557740 569 ntTSL 418.17■□□□□ 0.58e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-210ENST00000553950 584 ntTSL 216.97■□□□□ 0.318e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-219ENST00000555563 895 ntTSL 516.73■□□□□ 0.278e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-234ENST00000557703 542 ntTSL 416.41■□□□□ 0.228e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-228ENST00000557302 457 ntTSL 316.38■□□□□ 0.218e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-223ENST00000556689 768 ntTSL 316.01■□□□□ 0.158e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-211ENST00000554310 579 ntTSL 415.97■□□□□ 0.158e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-230ENST00000557427 569 ntTSL 415.82■□□□□ 0.128e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-227ENST00000557269 576 ntTSL 515.26■□□□□ 0.038e-7■■□□□ 11.7
DDX55Q8NHQ9 SHMT2-214ENST00000554604 879 ntTSL 515.17■□□□□ 0.028e-7■■□□□ 11.7
Retrieved 100 of 15,504 protein–RNA pairs in 119.7 ms