RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 NISCHQ9Y2I1 1504 aa36.37■■■■□ 3.41
SHMT2-235ENST00000557740 CCDC180Q9P1Z9 1646 aa32.56■■■□□ 2.8
SHMT2-235ENST00000557740 ABCC9O60706 1549 aa32.44■■■□□ 2.78
SHMT2-235ENST00000557740 RB1CC1Q8TDY2 1594 aa30.95■■■□□ 2.54
SHMT2-235ENST00000557740 NACADO15069 1562 aa30.76■■■□□ 2.52
SHMT2-235ENST00000557740 DCAF8L2P0C7V8 631 aa30.66■■■□□ 2.5
SHMT2-235ENST00000557740 MYO15BQ96JP2 1530 aa30.39■■■□□ 2.46
SHMT2-235ENST00000557740 PABPN1Q86U42 306 aaKnown RBP eCLIP30.21■■■□□ 2.43
SHMT2-235ENST00000557740 DNAJC5BQ9UF47 199 aa30.21■■■□□ 2.43
SHMT2-235ENST00000557740 ZCCHC6Q5VYS8 1495 aaKnown RBP30.19■■■□□ 2.42
SHMT2-235ENST00000557740 UNC13AQ9UPW8 1703 aa30.13■■■□□ 2.41
SHMT2-235ENST00000557740 DCAF1Q9Y4B6 1507 aa30.06■■■□□ 2.4
SHMT2-235ENST00000557740 BICRAQ9NZM4 1560 aa29.98■■■□□ 2.39
SHMT2-235ENST00000557740 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
SHMT2-235ENST00000557740 SHROOM4Q9ULL8 1493 aa29.69■■■□□ 2.34
SHMT2-235ENST00000557740 CC2D2AQ9P2K1 1620 aa29.28■■■□□ 2.28
SHMT2-235ENST00000557740 EIF4G1Q04637 1599 aaKnown RBP29.27■■■□□ 2.28
SHMT2-235ENST00000557740 CECR2Q9BXF3 1484 aa29.22■■■□□ 2.27
SHMT2-235ENST00000557740 NCAPD3P42695 1498 aa28.39■■■□□ 2.13
SHMT2-235ENST00000557740 SMARCA4P51532 1647 aa28.34■■■□□ 2.13
SHMT2-235ENST00000557740 ATAD2BQ9ULI0 1458 aa28.34■■■□□ 2.13
SHMT2-235ENST00000557740 SMARCA2P51531 1590 aa28.29■■■□□ 2.12
SHMT2-235ENST00000557740 BAZ1AQ9NRL2 1556 aaPredicted RBP28.24■■■□□ 2.11
SHMT2-235ENST00000557740 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
SHMT2-235ENST00000557740 BAZ1BQ9UIG0 1483 aaKnown RBP28.1■■■□□ 2.09
SHMT2-235ENST00000557740 ERCC6Q03468 1493 aa28.05■■■□□ 2.08
SHMT2-235ENST00000557740 PEG3Q9GZU2 1588 aa28.05■■■□□ 2.08
SHMT2-235ENST00000557740 MROH2BQ7Z745 1585 aa28.02■■■□□ 2.08
SHMT2-235ENST00000557740 CUX2O14529 1486 aa27.91■■■□□ 2.06
SHMT2-235ENST00000557740 NESP48681 1621 aa27.89■■■□□ 2.05
SHMT2-235ENST00000557740 LAMC3Q9Y6N6 1575 aa27.73■■■□□ 2.03
SHMT2-235ENST00000557740 WIZO95785 1651 aa27.66■■■□□ 2.02
SHMT2-235ENST00000557740 DNAJC5Q9H3Z4 198 aa27.66■■■□□ 2.02
SHMT2-235ENST00000557740 PDS5BQ9NTI5 1447 aa27.6■■■□□ 2.01
SHMT2-235ENST00000557740 THOC2Q8NI27 1593 aaKnown RBP27.57■■■□□ 2
SHMT2-235ENST00000557740 CADPSQ9ULU8 1353 aa27.56■■■□□ 2
SHMT2-235ENST00000557740 RSF1Q96T23 1441 aaPredicted RBP27.51■■□□□ 1.99
SHMT2-235ENST00000557740 KIF21AQ7Z4S6 1674 aa27.5■■□□□ 1.99
SHMT2-235ENST00000557740 TOP2AP11388 1531 aaKnown RBP27.39■■□□□ 1.98
SHMT2-235ENST00000557740 MRC2Q9UBG0 1479 aa27.36■■□□□ 1.97
SHMT2-235ENST00000557740 CEP164Q9UPV0 1460 aa27.28■■□□□ 1.96
SHMT2-235ENST00000557740 CFTRP13569 1480 aa27.26■■□□□ 1.95
SHMT2-235ENST00000557740 WDR62O43379 1518 aa27.26■■□□□ 1.95
SHMT2-235ENST00000557740 FANCD2Q9BXW9 1451 aa27.25■■□□□ 1.95
SHMT2-235ENST00000557740 CCDC88BA6NC98 1476 aa27.05■■□□□ 1.92
SHMT2-235ENST00000557740 URB2Q14146 1524 aaKnown RBP27■■□□□ 1.91
SHMT2-235ENST00000557740 PRDM2Q13029 1718 aa26.95■■□□□ 1.9
SHMT2-235ENST00000557740 TOPBP1Q92547 1522 aa26.74■■□□□ 1.87
SHMT2-235ENST00000557740 IFT140Q96RY7 1462 aa26.73■■□□□ 1.87
SHMT2-235ENST00000557740 ABCC8Q09428 1581 aa26.71■■□□□ 1.87
SHMT2-235ENST00000557740 DNMBPQ6XZF7 1577 aa26.67■■□□□ 1.86
SHMT2-235ENST00000557740 OSCARQ8IYS5 282 aa26.65■■□□□ 1.86
SHMT2-235ENST00000557740 ZNF608Q9ULD9 1512 aaPredicted RBP26.64■■□□□ 1.85
SHMT2-235ENST00000557740 TRIM41Q8WV44 630 aa26.57■■□□□ 1.84
SHMT2-235ENST00000557740 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
SHMT2-235ENST00000557740 POLA1P09884 1462 aaPredicted RBP26.49■■□□□ 1.83
SHMT2-235ENST00000557740 TARBP1Q13395 1621 aaKnown RBP26.46■■□□□ 1.83
SHMT2-235ENST00000557740 SUPT5HO00267 1087 aaKnown RBP26.44■■□□□ 1.82
SHMT2-235ENST00000557740 AQRO60306 1485 aaKnown RBP eCLIP26.42■■□□□ 1.825e-8■■■■□ 22.1
SHMT2-235ENST00000557740 RAD54L2Q9Y4B4 1467 aa26.36■■□□□ 1.81
SHMT2-235ENST00000557740 SOGA1O94964 1423 aa26.36■■□□□ 1.81
SHMT2-235ENST00000557740 FGD5Q6ZNL6 1462 aa26.35■■□□□ 1.81
SHMT2-235ENST00000557740 CUX1P39880 1505 aa26.33■■□□□ 1.81
SHMT2-235ENST00000557740 TDRD9Q8NDG6 1382 aaKnown RBP26.3■■□□□ 1.8
SHMT2-235ENST00000557740 FBLN2P98095 1184 aa26.26■■□□□ 1.79
SHMT2-235ENST00000557740 RIMBP3CA6NJZ7 1639 aa26.25■■□□□ 1.79
SHMT2-235ENST00000557740 RIMBP3BA6NNM3 1639 aa26.25■■□□□ 1.79
SHMT2-235ENST00000557740 RIMBP3Q9UFD9 1639 aa26.25■■□□□ 1.79
SHMT2-235ENST00000557740 CHD1O14646 1710 aa26.24■■□□□ 1.79
SHMT2-235ENST00000557740 WDR97A6NE52 1622 aa26.24■■□□□ 1.79
SHMT2-235ENST00000557740 ARHGEF11O15085 1522 aa26.22■■□□□ 1.79
SHMT2-235ENST00000557740 SNAPC4Q5SXM2 1469 aa26.18■■□□□ 1.78
SHMT2-235ENST00000557740 GRIN2BQ13224 1484 aa26.14■■□□□ 1.78
SHMT2-235ENST00000557740 MAGI1Q96QZ7 1491 aaPredicted RBP26.12■■□□□ 1.77
SHMT2-235ENST00000557740 CHMP7Q8WUX9 453 aaPredicted RBP26.08■■□□□ 1.77
SHMT2-235ENST00000557740 GAPVD1Q14C86 1478 aa26.05■■□□□ 1.76
SHMT2-235ENST00000557740 ABCA10Q8WWZ4 1543 aa26.05■■□□□ 1.76
SHMT2-235ENST00000557740 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
SHMT2-235ENST00000557740 CYB5RLQ6IPT4 315 aa26.01■■□□□ 1.75
SHMT2-235ENST00000557740 SYNJ1O43426 1573 aa26■■□□□ 1.75
SHMT2-235ENST00000557740 WRNQ14191 1432 aaPredicted RBP eCLIP26■■□□□ 1.75
SHMT2-235ENST00000557740 PBRM1Q86U86 1689 aa25.99■■□□□ 1.75
SHMT2-235ENST00000557740 ABCA5Q8WWZ7 1642 aa25.98■■□□□ 1.75
SHMT2-235ENST00000557740 CLASP1Q7Z460 1538 aa25.98■■□□□ 1.75
SHMT2-235ENST00000557740 ARAP1Q96P48 1450 aa25.98■■□□□ 1.75
SHMT2-235ENST00000557740 TOP2BQ02880 1626 aa25.95■■□□□ 1.74
SHMT2-235ENST00000557740 BIVM-ERCC5R4GMW8 1640 aa25.93■■□□□ 1.74
SHMT2-235ENST00000557740 ADAMTS12P58397 1594 aa25.8■■□□□ 1.72
SHMT2-235ENST00000557740 GRIN2AQ12879 1464 aa25.79■■□□□ 1.72
SHMT2-235ENST00000557740 FHAD1B1AJZ9 1412 aa25.74■■□□□ 1.71
SHMT2-235ENST00000557740 ERICH3Q5RHP9 1530 aa25.73■■□□□ 1.71
SHMT2-235ENST00000557740 TRHP20396 242 aaPredicted RBP25.7■■□□□ 1.7
SHMT2-235ENST00000557740 NUP160Q12769 1436 aa25.69■■□□□ 1.7
SHMT2-235ENST00000557740 CEP170Q5SW79 1584 aa25.67■■□□□ 1.7
SHMT2-235ENST00000557740 ERCC6L2Q5T890 1561 aa25.56■■□□□ 1.68
SHMT2-235ENST00000557740 SHROOM2Q13796 1616 aa25.53■■□□□ 1.68
SHMT2-235ENST00000557740 KIF27Q86VH2 1401 aa25.48■■□□□ 1.67
SHMT2-235ENST00000557740 PRG4Q92954 1404 aaPredicted RBP25.45■■□□□ 1.66
SHMT2-235ENST00000557740 RUSC2Q8N2Y8 1516 aa25.42■■□□□ 1.66
SHMT2-235ENST00000557740 IGF1RP08069 1367 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms