RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
SHMT2-214ENST00000554604 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
SHMT2-214ENST00000554604 ABCC9O60706 1549 aa26.78■■□□□ 1.88
SHMT2-214ENST00000554604 RB1CC1Q8TDY2 1594 aa25.65■■□□□ 1.7
SHMT2-214ENST00000554604 NACADO15069 1562 aa25.54■■□□□ 1.68
SHMT2-214ENST00000554604 DCAF8L2P0C7V8 631 aa25.54■■□□□ 1.68
SHMT2-214ENST00000554604 MYO15BQ96JP2 1530 aa25.26■■□□□ 1.63
SHMT2-214ENST00000554604 ZCCHC6Q5VYS8 1495 aaKnown RBP25.2■■□□□ 1.62
SHMT2-214ENST00000554604 UNC13AQ9UPW8 1703 aa25.11■■□□□ 1.61
SHMT2-214ENST00000554604 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
SHMT2-214ENST00000554604 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
SHMT2-214ENST00000554604 BICRAQ9NZM4 1560 aa24.84■■□□□ 1.57
SHMT2-214ENST00000554604 DNAJC5BQ9UF47 199 aa24.76■■□□□ 1.55
SHMT2-214ENST00000554604 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
SHMT2-214ENST00000554604 SHROOM4Q9ULL8 1493 aa24.55■■□□□ 1.52
SHMT2-214ENST00000554604 EIF4G1Q04637 1599 aaKnown RBP24.23■■□□□ 1.47
SHMT2-214ENST00000554604 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
SHMT2-214ENST00000554604 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
SHMT2-214ENST00000554604 SMARCA4P51532 1647 aa23.62■■□□□ 1.37
SHMT2-214ENST00000554604 BAZ1AQ9NRL2 1556 aaPredicted RBP23.55■■□□□ 1.36
SHMT2-214ENST00000554604 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
SHMT2-214ENST00000554604 ATAD2BQ9ULI0 1458 aa23.52■■□□□ 1.36
SHMT2-214ENST00000554604 SMARCA2P51531 1590 aa23.52■■□□□ 1.36
SHMT2-214ENST00000554604 HMGXB3Q12766 1538 aa23.42■■□□□ 1.34
SHMT2-214ENST00000554604 MROH2BQ7Z745 1585 aa23.37■■□□□ 1.33
SHMT2-214ENST00000554604 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
SHMT2-214ENST00000554604 PEG3Q9GZU2 1588 aa23.35■■□□□ 1.33
SHMT2-214ENST00000554604 WIZO95785 1651 aa23.15■■□□□ 1.3
SHMT2-214ENST00000554604 ERCC6Q03468 1493 aa23.13■■□□□ 1.29
SHMT2-214ENST00000554604 NESP48681 1621 aa23.08■■□□□ 1.29
SHMT2-214ENST00000554604 LAMC3Q9Y6N6 1575 aa23■■□□□ 1.27
SHMT2-214ENST00000554604 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
SHMT2-214ENST00000554604 CUX2O14529 1486 aa22.93■■□□□ 1.26
SHMT2-214ENST00000554604 TOP2AP11388 1531 aaKnown RBP22.86■■□□□ 1.25
SHMT2-214ENST00000554604 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
SHMT2-214ENST00000554604 PDS5BQ9NTI5 1447 aa22.85■■□□□ 1.25
SHMT2-214ENST00000554604 KIF21AQ7Z4S6 1674 aa22.85■■□□□ 1.25
SHMT2-214ENST00000554604 THOC2Q8NI27 1593 aaKnown RBP22.79■■□□□ 1.24
SHMT2-214ENST00000554604 CFTRP13569 1480 aa22.66■■□□□ 1.22
SHMT2-214ENST00000554604 MRC2Q9UBG0 1479 aa22.62■■□□□ 1.21
SHMT2-214ENST00000554604 CEP164Q9UPV0 1460 aa22.62■■□□□ 1.21
SHMT2-214ENST00000554604 FANCD2Q9BXW9 1451 aa22.61■■□□□ 1.21
SHMT2-214ENST00000554604 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
SHMT2-214ENST00000554604 PRDM2Q13029 1718 aa22.57■■□□□ 1.2
SHMT2-214ENST00000554604 WDR62O43379 1518 aa22.55■■□□□ 1.2
SHMT2-214ENST00000554604 DNAJC5Q9H3Z4 198 aa22.53■■□□□ 1.2
SHMT2-214ENST00000554604 URB2Q14146 1524 aaKnown RBP22.38■■□□□ 1.17
SHMT2-214ENST00000554604 SUPT5HO00267 1087 aaKnown RBP22.3■■□□□ 1.16
SHMT2-214ENST00000554604 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
SHMT2-214ENST00000554604 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
SHMT2-214ENST00000554604 DNMBPQ6XZF7 1577 aa22.18■■□□□ 1.14
SHMT2-214ENST00000554604 IFT140Q96RY7 1462 aa22.14■■□□□ 1.13
SHMT2-214ENST00000554604 ZNF608Q9ULD9 1512 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-214ENST00000554604 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
SHMT2-214ENST00000554604 TARBP1Q13395 1621 aaKnown RBP21.99■■□□□ 1.11
SHMT2-214ENST00000554604 EIF4G3O43432 1585 aaKnown RBP21.99■■□□□ 1.11
SHMT2-214ENST00000554604 OSCARQ8IYS5 282 aa21.96■■□□□ 1.11
SHMT2-214ENST00000554604 CUX1P39880 1505 aa21.95■■□□□ 1.1
SHMT2-214ENST00000554604 SOGA1O94964 1423 aa21.93■■□□□ 1.1
SHMT2-214ENST00000554604 FGD5Q6ZNL6 1462 aa21.92■■□□□ 1.1
SHMT2-214ENST00000554604 AQRO60306 1485 aaKnown RBP eCLIP21.91■■□□□ 1.15e-7■■■■□ 23.4
SHMT2-214ENST00000554604 RAD54L2Q9Y4B4 1467 aa21.91■■□□□ 1.1
SHMT2-214ENST00000554604 TDRD9Q8NDG6 1382 aaKnown RBP21.84■■□□□ 1.09
SHMT2-214ENST00000554604 WDR97A6NE52 1622 aa21.8■■□□□ 1.08
SHMT2-214ENST00000554604 CHD1O14646 1710 aa21.8■■□□□ 1.08
SHMT2-214ENST00000554604 FBLN2P98095 1184 aa21.76■■□□□ 1.07
SHMT2-214ENST00000554604 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
SHMT2-214ENST00000554604 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
SHMT2-214ENST00000554604 TOP2BQ02880 1626 aa21.71■■□□□ 1.07
SHMT2-214ENST00000554604 BIVM-ERCC5R4GMW8 1640 aa21.71■■□□□ 1.07
SHMT2-214ENST00000554604 GRIN2BQ13224 1484 aa21.7■■□□□ 1.06
SHMT2-214ENST00000554604 SNAPC4Q5SXM2 1469 aa21.7■■□□□ 1.06
SHMT2-214ENST00000554604 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
SHMT2-214ENST00000554604 PBRM1Q86U86 1689 aa21.69■■□□□ 1.06
SHMT2-214ENST00000554604 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
SHMT2-214ENST00000554604 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
SHMT2-214ENST00000554604 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
SHMT2-214ENST00000554604 CHMP7Q8WUX9 453 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-214ENST00000554604 RIMBP3CA6NJZ7 1639 aa21.64■■□□□ 1.05
SHMT2-214ENST00000554604 RIMBP3BA6NNM3 1639 aa21.64■■□□□ 1.05
SHMT2-214ENST00000554604 RIMBP3Q9UFD9 1639 aa21.64■■□□□ 1.05
SHMT2-214ENST00000554604 ABCA5Q8WWZ7 1642 aa21.63■■□□□ 1.05
SHMT2-214ENST00000554604 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SHMT2-214ENST00000554604 SYNJ2O15056 1496 aa21.58■■□□□ 1.05
SHMT2-214ENST00000554604 CLASP1Q7Z460 1538 aa21.48■■□□□ 1.03
SHMT2-214ENST00000554604 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
SHMT2-214ENST00000554604 CYB5RLQ6IPT4 315 aa21.44■■□□□ 1.02
SHMT2-214ENST00000554604 ERICH3Q5RHP9 1530 aa21.44■■□□□ 1.02
SHMT2-214ENST00000554604 GRIN2AQ12879 1464 aa21.42■■□□□ 1.02
SHMT2-214ENST00000554604 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
SHMT2-214ENST00000554604 ARAP1Q96P48 1450 aa21.39■■□□□ 1.01
SHMT2-214ENST00000554604 CEP170Q5SW79 1584 aa21.32■■□□□ 1
SHMT2-214ENST00000554604 KIF27Q86VH2 1401 aa21.3■■□□□ 1
SHMT2-214ENST00000554604 NUP160Q12769 1436 aa21.29■■□□□ 1
SHMT2-214ENST00000554604 CUL7Q14999 1698 aa21.22■□□□□ 0.99
SHMT2-214ENST00000554604 IGF1RP08069 1367 aa21.21■□□□□ 0.99
SHMT2-214ENST00000554604 SHROOM2Q13796 1616 aa21.2■□□□□ 0.98
SHMT2-214ENST00000554604 ERCC6L2Q5T890 1561 aa21.18■□□□□ 0.98
SHMT2-214ENST00000554604 RUSC2Q8N2Y8 1516 aa21.14■□□□□ 0.97
SHMT2-214ENST00000554604 TRHP20396 242 aaPredicted RBP21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms