Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HNRNPR-213ENST00000641107 646 nt17.51■□□□□ 0.398e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.48■□□□□ 0.398e-6■■□□□ 11.7
DDX55Q8NHQ9 THEM6-202ENST00000518798 2279 ntTSL 217.4■□□□□ 0.388e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.366e-8■■□□□ 11.7
DDX55Q8NHQ9 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.31■□□□□ 0.363e-6■■□□□ 11.7
DDX55Q8NHQ9 LMAN2-205ENST00000506310 564 ntTSL 417.3■□□□□ 0.368e-6■■□□□ 11.7
DDX55Q8NHQ9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.26■□□□□ 0.358e-6■■□□□ 11.7
DDX55Q8NHQ9 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.358e-6■■□□□ 11.7
DDX55Q8NHQ9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.19■□□□□ 0.348e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-209ENST00000476660 1637 ntTSL 1 (best)17.07■□□□□ 0.328e-6■■□□□ 11.7
DDX55Q8NHQ9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.06■□□□□ 0.328e-6■■□□□ 11.7
DDX55Q8NHQ9 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.95■□□□□ 0.38e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.38e-6■■□□□ 11.7
DDX55Q8NHQ9 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.9■□□□□ 0.38e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-206ENST00000412056 998 ntTSL 316.77■□□□□ 0.288e-6■■□□□ 11.7
DDX55Q8NHQ9 GCN1-206ENST00000549815 543 ntTSL 316.71■□□□□ 0.278e-6■■□□□ 11.7
DDX55Q8NHQ9 METAP2-203ENST00000535095 2431 ntTSL 216.55■□□□□ 0.248e-6■■□□□ 11.7
DDX55Q8NHQ9 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.5■□□□□ 0.238e-6■■□□□ 11.7
DDX55Q8NHQ9 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.228e-6■■□□□ 11.7
DDX55Q8NHQ9 GLRX5-203ENST00000557731 1863 ntTSL 516.42■□□□□ 0.221e-9■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-207ENST00000578756 652 ntTSL 216.32■□□□□ 0.28e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-209ENST00000579005 462 ntTSL 316.32■□□□□ 0.28e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-220ENST00000583329 998 ntTSL 316.26■□□□□ 0.198e-6■■□□□ 11.7
DDX55Q8NHQ9 THEM6-203ENST00000520217 551 ntTSL 316.26■□□□□ 0.198e-6■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.188e-6■■□□□ 11.7
DDX55Q8NHQ9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.176e-8■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.148e-6■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-203ENST00000431761 723 ntTSL 315.92■□□□□ 0.148e-6■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-204ENST00000525610 1449 ntTSL 215.91■□□□□ 0.148e-6■■□□□ 11.7
DDX55Q8NHQ9 HIGD1A-205ENST00000470543 983 ntTSL 215.88■□□□□ 0.138e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.138e-6■■□□□ 11.7
DDX55Q8NHQ9 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.116e-7■■□□□ 11.7
DDX55Q8NHQ9 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.118e-6■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC15.51■□□□□ 0.073e-8■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-207ENST00000586830 354 ntTSL 315.49■□□□□ 0.078e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.078e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-217ENST00000582022 2409 ntTSL 1 (best)15.43■□□□□ 0.068e-6■■□□□ 11.7
DDX55Q8NHQ9 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC15.33■□□□□ 0.048e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.018e-6■■□□□ 11.7
DDX55Q8NHQ9 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.028e-6■■□□□ 11.7
DDX55Q8NHQ9 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.028e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.048e-6■■□□□ 11.7
DDX55Q8NHQ9 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.048e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP6R2-205ENST00000401672 2199 ntTSL 214.78□□□□□ -0.048e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.058e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC14.71□□□□□ -0.058e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-212ENST00000600859 3474 ntTSL 214.68□□□□□ -0.066e-7■■□□□ 11.7
DDX55Q8NHQ9 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.078e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC14.53□□□□□ -0.088e-6■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC14.49□□□□□ -0.098e-6■■□□□ 11.7
DDX55Q8NHQ9 METAP2-209ENST00000550777 1779 ntTSL 5 BASIC14.47□□□□□ -0.098e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.18e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC14.38□□□□□ -0.116e-7■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-214ENST00000580601 2786 ntTSL 214.38□□□□□ -0.118e-6■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)14.34□□□□□ -0.118e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.126e-7■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-207ENST00000563678 1303 ntBASIC14.15□□□□□ -0.148e-6■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-203ENST00000441123 5380 ntTSL 1 (best)14.06□□□□□ -0.168e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.188e-6■■□□□ 11.7
DDX55Q8NHQ9 HSP90AA1-207ENST00000557089 694 ntTSL 213.93□□□□□ -0.188e-6■■□□□ 11.7
DDX55Q8NHQ9 ATP6V1F-202ENST00000492758 711 ntTSL 2 BASIC13.91□□□□□ -0.183e-37■■□□□ 11.7
DDX55Q8NHQ9 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.187e-8■■□□□ 11.7
DDX55Q8NHQ9 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC13.87□□□□□ -0.197e-8■■□□□ 11.7
DDX55Q8NHQ9 CMTM7-206ENST00000487007 746 ntTSL 513.84□□□□□ -0.198e-6■■□□□ 11.7
DDX55Q8NHQ9 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.28e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC13.79□□□□□ -0.26e-7■■□□□ 11.7
DDX55Q8NHQ9 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.228e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-207ENST00000462759 2755 ntTSL 1 (best) BASIC13.66□□□□□ -0.228e-6■■□□□ 11.7
DDX55Q8NHQ9 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.236e-7■■□□□ 11.7
DDX55Q8NHQ9 CMTM7-205ENST00000465248 780 ntTSL 213.61□□□□□ -0.238e-6■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-204ENST00000538404 1346 ntTSL 2 BASIC13.53□□□□□ -0.243e-8■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-202ENST00000535107 619 ntTSL 3 BASIC13.45□□□□□ -0.263e-8■■□□□ 11.7
DDX55Q8NHQ9 METAP2-201ENST00000261220 1836 ntTSL 2 BASIC13.4□□□□□ -0.268e-6■■□□□ 11.7
DDX55Q8NHQ9 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC13.25□□□□□ -0.298e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-203ENST00000374616 2691 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.298e-6■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-201ENST00000254109 1812 ntTSL 1 (best) BASIC12.91□□□□□ -0.348e-6■■□□□ 11.7
DDX55Q8NHQ9 CHTF8-206ENST00000519534 723 ntTSL 212.81□□□□□ -0.368e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-202ENST00000374612 2694 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.378e-6■■□□□ 11.7
DDX55Q8NHQ9 SAP30BP-203ENST00000542343 1011 ntTSL 212.6□□□□□ -0.398e-6■■□□□ 11.7
DDX55Q8NHQ9 OSBPL9-213ENST00000486942 2529 ntTSL 2 BASIC12.58□□□□□ -0.48e-6■■□□□ 11.7
DDX55Q8NHQ9 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.48e-6■■□□□ 11.7
DDX55Q8NHQ9 SAFB-210ENST00000591991 3471 ntTSL 212.51□□□□□ -0.418e-6■■□□□ 11.7
DDX55Q8NHQ9 IDH3B-205ENST00000466999 521 ntTSL 212.36□□□□□ -0.438e-6■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-206ENST00000449261 4816 ntTSL 512.1□□□□□ -0.478e-6■■□□□ 11.7
DDX55Q8NHQ9 HNRNPR-201ENST00000302271 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.498e-6■■□□□ 11.7
DDX55Q8NHQ9 METAP2-210ENST00000551840 1874 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.58e-6■■□□□ 11.7
DDX55Q8NHQ9 HIPK1-202ENST00000361587 5766 ntTSL 1 (best)11.88□□□□□ -0.518e-6■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-204ENST00000441730 3329 ntTSL 511.4□□□□□ -0.588e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-218ENST00000439806 748 ntTSL 511.27□□□□□ -0.618e-6■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.618e-6■■□□□ 11.7
DDX55Q8NHQ9 RNF220-206ENST00000453863 361 ntTSL 311.02□□□□□ -0.654e-9■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)10.52□□□□□ -0.728e-6■■□□□ 11.7
DDX55Q8NHQ9 LAMTOR1-207ENST00000544594 849 ntTSL 310.4□□□□□ -0.743e-8■■□□□ 11.7
DDX55Q8NHQ9 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC10.39□□□□□ -0.758e-6■■□□□ 11.7
DDX55Q8NHQ9 CLUHP3-206ENST00000562354 4117 ntTSL 1 (best) BASIC9.88□□□□□ -0.838e-6■■□□□ 11.7
DDX55Q8NHQ9 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.848e-6■■□□□ 11.7
DDX55Q8NHQ9 GLRX5-202ENST00000553672 912 ntTSL 29.77□□□□□ -0.851e-9■■□□□ 11.7
DDX55Q8NHQ9 POLRMT-204ENST00000590336 380 ntTSL 39.77□□□□□ -0.856e-7■■□□□ 11.7
DDX55Q8NHQ9 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC9.19□□□□□ -0.948e-6■■□□□ 11.7
DDX55Q8NHQ9 CPNE1-226ENST00000486021 506 ntTSL 29.18□□□□□ -0.948e-6■■□□□ 11.7
Retrieved 100 of 15,504 protein–RNA pairs in 113.5 ms