RNA–Protein interactions for RNA: ENST00000254109.9

CLUHP3-201, Transcript of clustered mitochondria homolog pseudogene 3, humanhuman

TSL 1 (best) BASIC

Gene CLUHP3, Length 1,812 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLUHP3-201ENST00000254109 NISCHQ9Y2I1 1504 aa25.81■■□□□ 1.72
CLUHP3-201ENST00000254109 CCDC180Q9P1Z9 1646 aa22.65■■□□□ 1.22
CLUHP3-201ENST00000254109 ABCC9O60706 1549 aa21.82■■□□□ 1.08
CLUHP3-201ENST00000254109 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
CLUHP3-201ENST00000254109 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
CLUHP3-201ENST00000254109 DCAF1Q9Y4B6 1507 aa21.29■■□□□ 1
CLUHP3-201ENST00000254109 NACADO15069 1562 aa21.19■□□□□ 0.98
CLUHP3-201ENST00000254109 MYO15BQ96JP2 1530 aa21.17■□□□□ 0.98
CLUHP3-201ENST00000254109 RB1CC1Q8TDY2 1594 aa21.11■□□□□ 0.97
CLUHP3-201ENST00000254109 SHROOM4Q9ULL8 1493 aa20.86■□□□□ 0.93
CLUHP3-201ENST00000254109 SCRIBQ14160 1630 aa20.84■□□□□ 0.93
CLUHP3-201ENST00000254109 UNC13AQ9UPW8 1703 aa20.72■□□□□ 0.91
CLUHP3-201ENST00000254109 PABPN1Q86U42 306 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLUHP3-201ENST00000254109 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
CLUHP3-201ENST00000254109 CECR2Q9BXF3 1484 aa20.12■□□□□ 0.81
CLUHP3-201ENST00000254109 MROH2BQ7Z745 1585 aa19.95■□□□□ 0.78
CLUHP3-201ENST00000254109 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
CLUHP3-201ENST00000254109 SMARCA4P51532 1647 aa19.92■□□□□ 0.78
CLUHP3-201ENST00000254109 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
CLUHP3-201ENST00000254109 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
CLUHP3-201ENST00000254109 SUPT5HO00267 1087 aaKnown RBP19.88■□□□□ 0.77
CLUHP3-201ENST00000254109 WIZO95785 1651 aa19.78■□□□□ 0.76
CLUHP3-201ENST00000254109 CC2D2AQ9P2K1 1620 aa19.72■□□□□ 0.75
CLUHP3-201ENST00000254109 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
CLUHP3-201ENST00000254109 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
CLUHP3-201ENST00000254109 SMARCA2P51531 1590 aa19.64■□□□□ 0.73
CLUHP3-201ENST00000254109 DNAJC5BQ9UF47 199 aa19.62■□□□□ 0.73
CLUHP3-201ENST00000254109 NCAPD3P42695 1498 aa19.56■□□□□ 0.72
CLUHP3-201ENST00000254109 BAZ1BQ9UIG0 1483 aaKnown RBP19.55■□□□□ 0.72
CLUHP3-201ENST00000254109 TOP2AP11388 1531 aaKnown RBP19.52■□□□□ 0.72
CLUHP3-201ENST00000254109 HMGXB3Q12766 1538 aa19.49■□□□□ 0.71
CLUHP3-201ENST00000254109 CCDC88BA6NC98 1476 aa19.34■□□□□ 0.69
CLUHP3-201ENST00000254109 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
CLUHP3-201ENST00000254109 NESP48681 1621 aa19.05■□□□□ 0.64
CLUHP3-201ENST00000254109 CADPSQ9ULU8 1353 aa19.05■□□□□ 0.64
CLUHP3-201ENST00000254109 CFTRP13569 1480 aa19.03■□□□□ 0.64
CLUHP3-201ENST00000254109 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
CLUHP3-201ENST00000254109 PRDM2Q13029 1718 aa18.92■□□□□ 0.62
CLUHP3-201ENST00000254109 FANCD2Q9BXW9 1451 aa18.85■□□□□ 0.61
CLUHP3-201ENST00000254109 ABCC8Q09428 1581 aa18.83■□□□□ 0.61
CLUHP3-201ENST00000254109 PDS5BQ9NTI5 1447 aa18.82■□□□□ 0.6
CLUHP3-201ENST00000254109 KIF21AQ7Z4S6 1674 aa18.8■□□□□ 0.6
CLUHP3-201ENST00000254109 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
CLUHP3-201ENST00000254109 WRNQ14191 1432 aaPredicted RBP eCLIP18.72■□□□□ 0.59
CLUHP3-201ENST00000254109 ERCC6Q03468 1493 aa18.72■□□□□ 0.59
CLUHP3-201ENST00000254109 SYNJ1O43426 1573 aa18.68■□□□□ 0.58
CLUHP3-201ENST00000254109 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
CLUHP3-201ENST00000254109 CUX1P39880 1505 aa18.67■□□□□ 0.58
CLUHP3-201ENST00000254109 URB2Q14146 1524 aaKnown RBP18.64■□□□□ 0.58
CLUHP3-201ENST00000254109 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
CLUHP3-201ENST00000254109 TOP2BQ02880 1626 aa18.61■□□□□ 0.57
CLUHP3-201ENST00000254109 TOPBP1Q92547 1522 aa18.6■□□□□ 0.57
CLUHP3-201ENST00000254109 BIVM-ERCC5R4GMW8 1640 aa18.6■□□□□ 0.57
CLUHP3-201ENST00000254109 DNMBPQ6XZF7 1577 aa18.6■□□□□ 0.57
CLUHP3-201ENST00000254109 THOC2Q8NI27 1593 aaKnown RBP18.57■□□□□ 0.56
CLUHP3-201ENST00000254109 WDR62O43379 1518 aa18.52■□□□□ 0.56
CLUHP3-201ENST00000254109 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
CLUHP3-201ENST00000254109 LOC105371045A0A1W2PR82 267 aa18.51■□□□□ 0.55
CLUHP3-201ENST00000254109 POLA1P09884 1462 aaPredicted RBP18.48■□□□□ 0.55
CLUHP3-201ENST00000254109 RAD54L2Q9Y4B4 1467 aa18.45■□□□□ 0.54
CLUHP3-201ENST00000254109 SOGA1O94964 1423 aa18.42■□□□□ 0.54
CLUHP3-201ENST00000254109 CUX2O14529 1486 aa18.41■□□□□ 0.54
CLUHP3-201ENST00000254109 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
CLUHP3-201ENST00000254109 FAM9AQ8IZU1 332 aaPredicted RBP18.37■□□□□ 0.53
CLUHP3-201ENST00000254109 TARBP1Q13395 1621 aaKnown RBP18.35■□□□□ 0.53
CLUHP3-201ENST00000254109 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.52
CLUHP3-201ENST00000254109 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
CLUHP3-201ENST00000254109 WDR97A6NE52 1622 aa18.31■□□□□ 0.52
CLUHP3-201ENST00000254109 TDRD9Q8NDG6 1382 aaKnown RBP18.3■□□□□ 0.52
CLUHP3-201ENST00000254109 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
CLUHP3-201ENST00000254109 KIF27Q86VH2 1401 aa18.27■□□□□ 0.51
CLUHP3-201ENST00000254109 AQRO60306 1485 aaKnown RBP eCLIP18.24■□□□□ 0.517e-7■■■■□ 19.8
CLUHP3-201ENST00000254109 ABCA5Q8WWZ7 1642 aa18.22■□□□□ 0.51
CLUHP3-201ENST00000254109 EEA1Q15075 1411 aa18.21■□□□□ 0.51
CLUHP3-201ENST00000254109 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.51
CLUHP3-201ENST00000254109 GAPVD1Q14C86 1478 aa18.2■□□□□ 0.5
CLUHP3-201ENST00000254109 EIF4G3O43432 1585 aaKnown RBP18.19■□□□□ 0.5
CLUHP3-201ENST00000254109 PCGF6Q9BYE7 350 aa18.19■□□□□ 0.5
CLUHP3-201ENST00000254109 IGF1RP08069 1367 aa18.17■□□□□ 0.5
CLUHP3-201ENST00000254109 EHMT2Q96KQ7 1210 aa18.17■□□□□ 0.5
CLUHP3-201ENST00000254109 PBRM1Q86U86 1689 aa18.14■□□□□ 0.49
CLUHP3-201ENST00000254109 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
CLUHP3-201ENST00000254109 ERICH3Q5RHP9 1530 aa18.1■□□□□ 0.49
CLUHP3-201ENST00000254109 CARMIL1Q5VZK9 1371 aa18.07■□□□□ 0.48
CLUHP3-201ENST00000254109 PRXQ9BXM0 1461 aa18.06■□□□□ 0.48
CLUHP3-201ENST00000254109 SNAPC4Q5SXM2 1469 aa18.06■□□□□ 0.48
CLUHP3-201ENST00000254109 TRIM26Q12899 539 aaPredicted RBP18.05■□□□□ 0.48
CLUHP3-201ENST00000254109 CUL7Q14999 1698 aa18.03■□□□□ 0.48
CLUHP3-201ENST00000254109 RAPGEF2Q9Y4G8 1499 aa18.03■□□□□ 0.48
CLUHP3-201ENST00000254109 KIF21BO75037 1637 aa18.02■□□□□ 0.48
CLUHP3-201ENST00000254109 ADAMTS12P58397 1594 aa18.01■□□□□ 0.47
CLUHP3-201ENST00000254109 HRCP23327 699 aa18■□□□□ 0.47
CLUHP3-201ENST00000254109 MAGI1Q96QZ7 1491 aaPredicted RBP17.99■□□□□ 0.47
CLUHP3-201ENST00000254109 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
CLUHP3-201ENST00000254109 GOLGA3Q08378 1498 aa17.97■□□□□ 0.47
CLUHP3-201ENST00000254109 FBLN2P98095 1184 aa17.96■□□□□ 0.47
CLUHP3-201ENST00000254109 UBTFP17480 764 aaKnown RBP17.95■□□□□ 0.46
CLUHP3-201ENST00000254109 CHMP7Q8WUX9 453 aaPredicted RBP17.93■□□□□ 0.46
CLUHP3-201ENST00000254109 SYNJ2O15056 1496 aa17.93■□□□□ 0.46
CLUHP3-201ENST00000254109 GRIN2AQ12879 1464 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms