RNA–Protein interactions for RNA: ENST00000562354.2

CLUHP3-206, Transcript of clustered mitochondria homolog pseudogene 3, humanhuman

TSL 1 (best) BASIC

Gene CLUHP3, Length 4,117 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLUHP3-206ENST00000562354 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
CLUHP3-206ENST00000562354 DCAF8L2P0C7V8 631 aa15.89■□□□□ 0.13
CLUHP3-206ENST00000562354 SHROOM4Q9ULL8 1493 aa15.58■□□□□ 0.08
CLUHP3-206ENST00000562354 CCDC180Q9P1Z9 1646 aa15.49■□□□□ 0.07
CLUHP3-206ENST00000562354 SUPT5HO00267 1087 aaKnown RBP15.26■□□□□ 0.03
CLUHP3-206ENST00000562354 ZCCHC6Q5VYS8 1495 aaKnown RBP15.22■□□□□ 0.03
CLUHP3-206ENST00000562354 ABCC9O60706 1549 aa15.01□□□□□ -0.01
CLUHP3-206ENST00000562354 DCAF1Q9Y4B6 1507 aa14.82□□□□□ -0.04
CLUHP3-206ENST00000562354 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
CLUHP3-206ENST00000562354 NACADO15069 1562 aa14.59□□□□□ -0.07
CLUHP3-206ENST00000562354 MYO15BQ96JP2 1530 aa14.54□□□□□ -0.08
CLUHP3-206ENST00000562354 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
CLUHP3-206ENST00000562354 HRCP23327 699 aa14.42□□□□□ -0.1
CLUHP3-206ENST00000562354 PELP1Q8IZL8 1130 aaKnown RBP14.4□□□□□ -0.1
CLUHP3-206ENST00000562354 PABPN1Q86U42 306 aaKnown RBP eCLIP14.39□□□□□ -0.117e-10■■■□□ 14.8
CLUHP3-206ENST00000562354 PCGF6Q9BYE7 350 aa14.39□□□□□ -0.11
CLUHP3-206ENST00000562354 ZEB1P37275 1124 aaPredicted RBP14.39□□□□□ -0.11
CLUHP3-206ENST00000562354 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
CLUHP3-206ENST00000562354 TRIM41Q8WV44 630 aa14.27□□□□□ -0.12
CLUHP3-206ENST00000562354 RSF1Q96T23 1441 aaPredicted RBP14.27□□□□□ -0.13
CLUHP3-206ENST00000562354 FAM9AQ8IZU1 332 aaPredicted RBP14.17□□□□□ -0.14
CLUHP3-206ENST00000562354 CECR2Q9BXF3 1484 aa14.17□□□□□ -0.14
CLUHP3-206ENST00000562354 TRIM26Q12899 539 aaPredicted RBP14.11□□□□□ -0.15
CLUHP3-206ENST00000562354 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
CLUHP3-206ENST00000562354 BAZ1AQ9NRL2 1556 aaPredicted RBP14.08□□□□□ -0.16
CLUHP3-206ENST00000562354 MYT1Q01538 1121 aa14.08□□□□□ -0.16
CLUHP3-206ENST00000562354 MROH2BQ7Z745 1585 aa14.06□□□□□ -0.16
CLUHP3-206ENST00000562354 CENPBP07199 599 aaPredicted RBP13.98□□□□□ -0.17
CLUHP3-206ENST00000562354 LOC105371045A0A1W2PR82 267 aa13.97□□□□□ -0.17
CLUHP3-206ENST00000562354 WIZO95785 1651 aa13.9□□□□□ -0.18
CLUHP3-206ENST00000562354 SMARCA4P51532 1647 aa13.86□□□□□ -0.19
CLUHP3-206ENST00000562354 BAZ1BQ9UIG0 1483 aaKnown RBP13.8□□□□□ -0.2
CLUHP3-206ENST00000562354 TOP2AP11388 1531 aaKnown RBP13.8□□□□□ -0.2
CLUHP3-206ENST00000562354 CCER1Q8TC90 406 aaPredicted RBP13.79□□□□□ -0.2
CLUHP3-206ENST00000562354 PPARGC1BQ86YN6 1023 aaKnown RBP13.79□□□□□ -0.2
CLUHP3-206ENST00000562354 UBTFP17480 764 aaKnown RBP13.76□□□□□ -0.21
CLUHP3-206ENST00000562354 CCDC88BA6NC98 1476 aa13.75□□□□□ -0.21
CLUHP3-206ENST00000562354 BICRAQ9NZM4 1560 aa13.75□□□□□ -0.21
CLUHP3-206ENST00000562354 UNC13AQ9UPW8 1703 aa13.73□□□□□ -0.21
CLUHP3-206ENST00000562354 SMARCA2P51531 1590 aa13.72□□□□□ -0.21
CLUHP3-206ENST00000562354 ATAD2BQ9ULI0 1458 aa13.7□□□□□ -0.22
CLUHP3-206ENST00000562354 APLP2Q06481 763 aa13.69□□□□□ -0.22
CLUHP3-206ENST00000562354 RANGAP1P46060 587 aaPredicted RBP13.62□□□□□ -0.23
CLUHP3-206ENST00000562354 CSRNP3Q8WYN3 585 aa13.61□□□□□ -0.23
CLUHP3-206ENST00000562354 WRNQ14191 1432 aaPredicted RBP eCLIP13.6□□□□□ -0.23
CLUHP3-206ENST00000562354 TTBK1Q5TCY1 1321 aaPredicted RBP13.57□□□□□ -0.24
CLUHP3-206ENST00000562354 ABCC8Q09428 1581 aa13.56□□□□□ -0.24
CLUHP3-206ENST00000562354 EIF4G1Q04637 1599 aaKnown RBP13.54□□□□□ -0.24
CLUHP3-206ENST00000562354 EEA1Q15075 1411 aa13.51□□□□□ -0.25
CLUHP3-206ENST00000562354 NCAPD3P42695 1498 aa13.5□□□□□ -0.25
CLUHP3-206ENST00000562354 PEG3Q9GZU2 1588 aa13.48□□□□□ -0.25
CLUHP3-206ENST00000562354 DIEXFQ68CQ4 756 aaKnown RBP13.45□□□□□ -0.26
CLUHP3-206ENST00000562354 SOGA1O94964 1423 aa13.44□□□□□ -0.26
CLUHP3-206ENST00000562354 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
CLUHP3-206ENST00000562354 ACIN1Q9UKV3 1341 aaKnown RBP13.4□□□□□ -0.26
CLUHP3-206ENST00000562354 GOLGA3Q08378 1498 aa13.37□□□□□ -0.27
CLUHP3-206ENST00000562354 CADPSQ9ULU8 1353 aa13.35□□□□□ -0.27
CLUHP3-206ENST00000562354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.35□□□□□ -0.27
CLUHP3-206ENST00000562354 TNIKQ9UKE5 1360 aa13.33□□□□□ -0.28
CLUHP3-206ENST00000562354 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
CLUHP3-206ENST00000562354 CEP162Q5TB80 1403 aa13.32□□□□□ -0.28
CLUHP3-206ENST00000562354 YTHDC1Q96MU7 727 aaKnown RBP13.31□□□□□ -0.28
CLUHP3-206ENST00000562354 ATP1B4Q9UN42 357 aaPredicted RBP13.31□□□□□ -0.28
CLUHP3-206ENST00000562354 KIF27Q86VH2 1401 aa13.31□□□□□ -0.28
CLUHP3-206ENST00000562354 GTF3C3Q9Y5Q9 886 aa13.29□□□□□ -0.28
CLUHP3-206ENST00000562354 CC2D2AQ9P2K1 1620 aa13.29□□□□□ -0.28
CLUHP3-206ENST00000562354 RUSC2Q8N2Y8 1516 aa13.28□□□□□ -0.28
CLUHP3-206ENST00000562354 CFTRP13569 1480 aa13.27□□□□□ -0.29
CLUHP3-206ENST00000562354 ZNF316A6NFI3 1004 aaPredicted RBP13.25□□□□□ -0.29
CLUHP3-206ENST00000562354 CLSPNQ9HAW4 1339 aa13.25□□□□□ -0.29
CLUHP3-206ENST00000562354 CLIP1P30622 1438 aa13.25□□□□□ -0.29
CLUHP3-206ENST00000562354 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
CLUHP3-206ENST00000562354 NEFLP07196 543 aa13.24□□□□□ -0.29
CLUHP3-206ENST00000562354 SCAF1Q9H7N4 1312 aaKnown RBP13.23□□□□□ -0.29
CLUHP3-206ENST00000562354 CUX2O14529 1486 aa13.2□□□□□ -0.3
CLUHP3-206ENST00000562354 FANCD2Q9BXW9 1451 aa13.19□□□□□ -0.3
CLUHP3-206ENST00000562354 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
CLUHP3-206ENST00000562354 SLC24A1O60721 1099 aa13.17□□□□□ -0.3
CLUHP3-206ENST00000562354 HNRNPUL2Q1KMD3 747 aaKnown RBP13.15□□□□□ -0.3
CLUHP3-206ENST00000562354 TOP2BQ02880 1626 aa13.15□□□□□ -0.3
CLUHP3-206ENST00000562354 ERICH6Q7L0X2 663 aa13.14□□□□□ -0.31
CLUHP3-206ENST00000562354 RAPGEF2Q9Y4G8 1499 aa13.13□□□□□ -0.31
CLUHP3-206ENST00000562354 P3H3Q8IVL6 736 aa13.12□□□□□ -0.31
CLUHP3-206ENST00000562354 CUX1P39880 1505 aa13.11□□□□□ -0.31
CLUHP3-206ENST00000562354 CARMIL1Q5VZK9 1371 aa13.11□□□□□ -0.31
CLUHP3-206ENST00000562354 NEUROD1Q13562 356 aa13.1□□□□□ -0.31
CLUHP3-206ENST00000562354 FGD5Q6ZNL6 1462 aa13.09□□□□□ -0.31
CLUHP3-206ENST00000562354 NESP48681 1621 aa13.08□□□□□ -0.32
CLUHP3-206ENST00000562354 ITGAEP38570 1179 aa13.05□□□□□ -0.32
CLUHP3-206ENST00000562354 KIF21BO75037 1637 aa13.05□□□□□ -0.32
CLUHP3-206ENST00000562354 VPS8Q8N3P4 1428 aa13.05□□□□□ -0.32
CLUHP3-206ENST00000562354 ERCC6Q03468 1493 aa13.03□□□□□ -0.32
CLUHP3-206ENST00000562354 TDRD9Q8NDG6 1382 aaKnown RBP13.02□□□□□ -0.33
CLUHP3-206ENST00000562354 BIVM-ERCC5R4GMW8 1640 aa13.01□□□□□ -0.33
CLUHP3-206ENST00000562354 FBLN2P98095 1184 aa13.01□□□□□ -0.33
CLUHP3-206ENST00000562354 DNAJC5BQ9UF47 199 aa13.01□□□□□ -0.33
CLUHP3-206ENST00000562354 IGF1RP08069 1367 aa13.01□□□□□ -0.33
CLUHP3-206ENST00000562354 RAD54L2Q9Y4B4 1467 aa12.99□□□□□ -0.33
CLUHP3-206ENST00000562354 PRXQ9BXM0 1461 aa12.98□□□□□ -0.33
CLUHP3-206ENST00000562354 LAMC3Q9Y6N6 1575 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms