RNA–Protein interactions for RNA: ENST00000486021.5

CPNE1-226, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-226ENST00000486021 NISCHQ9Y2I1 1504 aa18.27■□□□□ 0.51
CPNE1-226ENST00000486021 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
CPNE1-226ENST00000486021 ABCC9O60706 1549 aa16.15■□□□□ 0.18
CPNE1-226ENST00000486021 RB1CC1Q8TDY2 1594 aa15.61■□□□□ 0.09
CPNE1-226ENST00000486021 NACADO15069 1562 aa15.52■□□□□ 0.07
CPNE1-226ENST00000486021 DCAF8L2P0C7V8 631 aa15.39■□□□□ 0.05
CPNE1-226ENST00000486021 MYO15BQ96JP2 1530 aa15.34■□□□□ 0.05
CPNE1-226ENST00000486021 UNC13AQ9UPW8 1703 aa15.21■□□□□ 0.03
CPNE1-226ENST00000486021 DCAF1Q9Y4B6 1507 aa15.17■□□□□ 0.02
CPNE1-226ENST00000486021 ZCCHC6Q5VYS8 1495 aaKnown RBP15.15■□□□□ 0.02
CPNE1-226ENST00000486021 PABPN1Q86U42 306 aaKnown RBP eCLIP15□□□□□ -0.01
CPNE1-226ENST00000486021 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
CPNE1-226ENST00000486021 BICRAQ9NZM4 1560 aa14.96□□□□□ -0.01
CPNE1-226ENST00000486021 SCRIBQ14160 1630 aa14.88□□□□□ -0.03
CPNE1-226ENST00000486021 DNAJC5BQ9UF47 199 aa14.86□□□□□ -0.03
CPNE1-226ENST00000486021 CC2D2AQ9P2K1 1620 aa14.66□□□□□ -0.06
CPNE1-226ENST00000486021 EIF4G1Q04637 1599 aaKnown RBP14.66□□□□□ -0.06
CPNE1-226ENST00000486021 CECR2Q9BXF3 1484 aa14.57□□□□□ -0.08
CPNE1-226ENST00000486021 SMARCA2P51531 1590 aa14.27□□□□□ -0.12
CPNE1-226ENST00000486021 BAZ1AQ9NRL2 1556 aaPredicted RBP14.26□□□□□ -0.13
CPNE1-226ENST00000486021 SMARCA4P51532 1647 aa14.25□□□□□ -0.13
CPNE1-226ENST00000486021 NCAPD3P42695 1498 aa14.24□□□□□ -0.13
CPNE1-226ENST00000486021 HMGXB3Q12766 1538 aa14.2□□□□□ -0.14
CPNE1-226ENST00000486021 ATAD2BQ9ULI0 1458 aa14.18□□□□□ -0.14
CPNE1-226ENST00000486021 PEG3Q9GZU2 1588 aa14.13□□□□□ -0.15
CPNE1-226ENST00000486021 BAZ1BQ9UIG0 1483 aaKnown RBP14.12□□□□□ -0.15
CPNE1-226ENST00000486021 ERCC6Q03468 1493 aa14.06□□□□□ -0.16
CPNE1-226ENST00000486021 MROH2BQ7Z745 1585 aa14□□□□□ -0.17
CPNE1-226ENST00000486021 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
CPNE1-226ENST00000486021 CUX2O14529 1486 aa13.99□□□□□ -0.17
CPNE1-226ENST00000486021 WIZO95785 1651 aa13.91□□□□□ -0.18
CPNE1-226ENST00000486021 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.19
CPNE1-226ENST00000486021 NESP48681 1621 aa13.86□□□□□ -0.19
CPNE1-226ENST00000486021 KIF21AQ7Z4S6 1674 aa13.83□□□□□ -0.2
CPNE1-226ENST00000486021 CADPSQ9ULU8 1353 aa13.82□□□□□ -0.2
CPNE1-226ENST00000486021 THOC2Q8NI27 1593 aaKnown RBP13.79□□□□□ -0.2
CPNE1-226ENST00000486021 TOP2AP11388 1531 aaKnown RBP13.78□□□□□ -0.2
CPNE1-226ENST00000486021 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
CPNE1-226ENST00000486021 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
CPNE1-226ENST00000486021 DNAJC5Q9H3Z4 198 aa13.73□□□□□ -0.21
CPNE1-226ENST00000486021 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.21
CPNE1-226ENST00000486021 MRC2Q9UBG0 1479 aa13.7□□□□□ -0.22
CPNE1-226ENST00000486021 CFTRP13569 1480 aa13.67□□□□□ -0.22
CPNE1-226ENST00000486021 FANCD2Q9BXW9 1451 aa13.66□□□□□ -0.22
CPNE1-226ENST00000486021 WDR62O43379 1518 aa13.65□□□□□ -0.22
CPNE1-226ENST00000486021 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
CPNE1-226ENST00000486021 ABCC8Q09428 1581 aa13.55□□□□□ -0.24
CPNE1-226ENST00000486021 URB2Q14146 1524 aaKnown RBP13.46□□□□□ -0.25
CPNE1-226ENST00000486021 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
CPNE1-226ENST00000486021 DNMBPQ6XZF7 1577 aa13.41□□□□□ -0.26
CPNE1-226ENST00000486021 TOPBP1Q92547 1522 aa13.4□□□□□ -0.26
CPNE1-226ENST00000486021 OSCARQ8IYS5 282 aa13.37□□□□□ -0.27
CPNE1-226ENST00000486021 WDR97A6NE52 1622 aa13.32□□□□□ -0.28
CPNE1-226ENST00000486021 SUPT5HO00267 1087 aaKnown RBP13.3□□□□□ -0.28
CPNE1-226ENST00000486021 EIF4G3O43432 1585 aaKnown RBP13.29□□□□□ -0.28
CPNE1-226ENST00000486021 TARBP1Q13395 1621 aaKnown RBP13.27□□□□□ -0.29
CPNE1-226ENST00000486021 POLA1P09884 1462 aaPredicted RBP13.24□□□□□ -0.29
CPNE1-226ENST00000486021 SOGA1O94964 1423 aa13.24□□□□□ -0.29
CPNE1-226ENST00000486021 ZNF608Q9ULD9 1512 aaPredicted RBP13.23□□□□□ -0.29
CPNE1-226ENST00000486021 CHD1O14646 1710 aa13.22□□□□□ -0.29
CPNE1-226ENST00000486021 FGD5Q6ZNL6 1462 aa13.2□□□□□ -0.3
CPNE1-226ENST00000486021 TRIM41Q8WV44 630 aa13.19□□□□□ -0.3
CPNE1-226ENST00000486021 AQRO60306 1485 aaKnown RBP eCLIP13.17□□□□□ -0.39e-8■■■■□ 25.1
CPNE1-226ENST00000486021 CUX1P39880 1505 aa13.17□□□□□ -0.3
CPNE1-226ENST00000486021 FBLN2P98095 1184 aa13.16□□□□□ -0.3
CPNE1-226ENST00000486021 PBRM1Q86U86 1689 aa13.15□□□□□ -0.3
CPNE1-226ENST00000486021 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.3
CPNE1-226ENST00000486021 MAGI1Q96QZ7 1491 aaPredicted RBP13.14□□□□□ -0.31
CPNE1-226ENST00000486021 RIMBP3CA6NJZ7 1639 aa13.13□□□□□ -0.31
CPNE1-226ENST00000486021 RIMBP3BA6NNM3 1639 aa13.13□□□□□ -0.31
CPNE1-226ENST00000486021 RIMBP3Q9UFD9 1639 aa13.13□□□□□ -0.31
CPNE1-226ENST00000486021 GRIN2BQ13224 1484 aa13.13□□□□□ -0.31
CPNE1-226ENST00000486021 SYNJ1O43426 1573 aa13.12□□□□□ -0.31
CPNE1-226ENST00000486021 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
CPNE1-226ENST00000486021 BIVM-ERCC5R4GMW8 1640 aa13.12□□□□□ -0.31
CPNE1-226ENST00000486021 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
CPNE1-226ENST00000486021 WRNQ14191 1432 aaPredicted RBP eCLIP13.1□□□□□ -0.31
CPNE1-226ENST00000486021 GAPVD1Q14C86 1478 aa13.1□□□□□ -0.31
CPNE1-226ENST00000486021 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
CPNE1-226ENST00000486021 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
CPNE1-226ENST00000486021 SNAPC4Q5SXM2 1469 aa13.09□□□□□ -0.31
CPNE1-226ENST00000486021 ARHGEF11O15085 1522 aa13.08□□□□□ -0.31
CPNE1-226ENST00000486021 SYNJ2O15056 1496 aa13.07□□□□□ -0.32
CPNE1-226ENST00000486021 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
CPNE1-226ENST00000486021 ERICH3Q5RHP9 1530 aa12.98□□□□□ -0.33
CPNE1-226ENST00000486021 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
CPNE1-226ENST00000486021 CYB5RLQ6IPT4 315 aa12.98□□□□□ -0.33
CPNE1-226ENST00000486021 ADAMTS12P58397 1594 aa12.94□□□□□ -0.34
CPNE1-226ENST00000486021 FHAD1B1AJZ9 1412 aa12.94□□□□□ -0.34
CPNE1-226ENST00000486021 GRIN2AQ12879 1464 aa12.93□□□□□ -0.34
CPNE1-226ENST00000486021 ARAP1Q96P48 1450 aa12.91□□□□□ -0.34
CPNE1-226ENST00000486021 CUL7Q14999 1698 aa12.89□□□□□ -0.35
CPNE1-226ENST00000486021 TRHP20396 242 aaPredicted RBP12.87□□□□□ -0.35
CPNE1-226ENST00000486021 KIF27Q86VH2 1401 aa12.87□□□□□ -0.35
CPNE1-226ENST00000486021 NUP160Q12769 1436 aa12.86□□□□□ -0.35
CPNE1-226ENST00000486021 CEP170Q5SW79 1584 aa12.84□□□□□ -0.35
CPNE1-226ENST00000486021 SHROOM2Q13796 1616 aa12.83□□□□□ -0.36
CPNE1-226ENST00000486021 JPH4Q96JJ6 628 aa12.77□□□□□ -0.37
CPNE1-226ENST00000486021 RUSC2Q8N2Y8 1516 aa12.75□□□□□ -0.37
CPNE1-226ENST00000486021 PRG4Q92954 1404 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms