RNA–Protein interactions for RNA: ENST00000549815.1

GCN1-206, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-206ENST00000549815 NISCHQ9Y2I1 1504 aa33.6■■■□□ 2.97
GCN1-206ENST00000549815 CCDC180Q9P1Z9 1646 aa30.07■■■□□ 2.4
GCN1-206ENST00000549815 ABCC9O60706 1549 aa29.83■■■□□ 2.37
GCN1-206ENST00000549815 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
GCN1-206ENST00000549815 NACADO15069 1562 aa28.37■■■□□ 2.13
GCN1-206ENST00000549815 DCAF8L2P0C7V8 631 aa28.14■■■□□ 2.1
GCN1-206ENST00000549815 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.09
GCN1-206ENST00000549815 UNC13AQ9UPW8 1703 aa27.91■■■□□ 2.06
GCN1-206ENST00000549815 ZCCHC6Q5VYS8 1495 aaKnown RBP27.9■■■□□ 2.06
GCN1-206ENST00000549815 DNAJC5BQ9UF47 199 aa27.86■■■□□ 2.05
GCN1-206ENST00000549815 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
GCN1-206ENST00000549815 PABPN1Q86U42 306 aaKnown RBP eCLIP27.79■■■□□ 2.042e-7■■■■□ 19.4
GCN1-206ENST00000549815 BICRAQ9NZM4 1560 aa27.73■■■□□ 2.03
GCN1-206ENST00000549815 SCRIBQ14160 1630 aa27.38■■□□□ 1.97
GCN1-206ENST00000549815 SHROOM4Q9ULL8 1493 aa27.35■■□□□ 1.97
GCN1-206ENST00000549815 CC2D2AQ9P2K1 1620 aa27■■□□□ 1.91
GCN1-206ENST00000549815 EIF4G1Q04637 1599 aaKnown RBP26.99■■□□□ 1.91
GCN1-206ENST00000549815 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
GCN1-206ENST00000549815 NCAPD3P42695 1498 aa26.2■■□□□ 1.78
GCN1-206ENST00000549815 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
GCN1-206ENST00000549815 ATAD2BQ9ULI0 1458 aa26.14■■□□□ 1.78
GCN1-206ENST00000549815 SMARCA2P51531 1590 aa26.06■■□□□ 1.76
GCN1-206ENST00000549815 BAZ1AQ9NRL2 1556 aaPredicted RBP26.05■■□□□ 1.76
GCN1-206ENST00000549815 HMGXB3Q12766 1538 aa26.03■■□□□ 1.76
GCN1-206ENST00000549815 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
GCN1-206ENST00000549815 MROH2BQ7Z745 1585 aa25.9■■□□□ 1.74
GCN1-206ENST00000549815 BAZ1BQ9UIG0 1483 aaKnown RBP25.86■■□□□ 1.73
GCN1-206ENST00000549815 NESP48681 1621 aa25.71■■□□□ 1.71
GCN1-206ENST00000549815 ERCC6Q03468 1493 aa25.71■■□□□ 1.71
GCN1-206ENST00000549815 CUX2O14529 1486 aa25.66■■□□□ 1.7
GCN1-206ENST00000549815 WIZO95785 1651 aa25.58■■□□□ 1.69
GCN1-206ENST00000549815 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
GCN1-206ENST00000549815 THOC2Q8NI27 1593 aaKnown RBP25.44■■□□□ 1.66
GCN1-206ENST00000549815 RSF1Q96T23 1441 aaPredicted RBP25.42■■□□□ 1.66
GCN1-206ENST00000549815 DNAJC5Q9H3Z4 198 aa25.41■■□□□ 1.66
GCN1-206ENST00000549815 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.66
GCN1-206ENST00000549815 CADPSQ9ULU8 1353 aa25.39■■□□□ 1.65
GCN1-206ENST00000549815 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
GCN1-206ENST00000549815 TOP2AP11388 1531 aaKnown RBP25.27■■□□□ 1.64
GCN1-206ENST00000549815 CFTRP13569 1480 aa25.16■■□□□ 1.62
GCN1-206ENST00000549815 MRC2Q9UBG0 1479 aa25.16■■□□□ 1.62
GCN1-206ENST00000549815 WDR62O43379 1518 aa25.13■■□□□ 1.61
GCN1-206ENST00000549815 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
GCN1-206ENST00000549815 CEP164Q9UPV0 1460 aa25.09■■□□□ 1.61
GCN1-206ENST00000549815 CCDC88BA6NC98 1476 aa24.98■■□□□ 1.59
GCN1-206ENST00000549815 PRDM2Q13029 1718 aa24.94■■□□□ 1.58
GCN1-206ENST00000549815 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
GCN1-206ENST00000549815 TOPBP1Q92547 1522 aa24.66■■□□□ 1.54
GCN1-206ENST00000549815 IFT140Q96RY7 1462 aa24.6■■□□□ 1.53
GCN1-206ENST00000549815 ABCC8Q09428 1581 aa24.59■■□□□ 1.53
GCN1-206ENST00000549815 DNMBPQ6XZF7 1577 aa24.59■■□□□ 1.53
GCN1-206ENST00000549815 ZNF608Q9ULD9 1512 aaPredicted RBP24.56■■□□□ 1.52
GCN1-206ENST00000549815 OSCARQ8IYS5 282 aa24.47■■□□□ 1.51
GCN1-206ENST00000549815 TARBP1Q13395 1621 aaKnown RBP24.45■■□□□ 1.5
GCN1-206ENST00000549815 EIF4G3O43432 1585 aaKnown RBP24.43■■□□□ 1.5
GCN1-206ENST00000549815 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
GCN1-206ENST00000549815 AQRO60306 1485 aaKnown RBP eCLIP24.34■■□□□ 1.493e-9■■■■■ 45.1
GCN1-206ENST00000549815 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
GCN1-206ENST00000549815 RAD54L2Q9Y4B4 1467 aa24.32■■□□□ 1.48
GCN1-206ENST00000549815 CUX1P39880 1505 aa24.31■■□□□ 1.48
GCN1-206ENST00000549815 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
GCN1-206ENST00000549815 SOGA1O94964 1423 aa24.28■■□□□ 1.48
GCN1-206ENST00000549815 FGD5Q6ZNL6 1462 aa24.28■■□□□ 1.48
GCN1-206ENST00000549815 CHD1O14646 1710 aa24.21■■□□□ 1.47
GCN1-206ENST00000549815 WDR97A6NE52 1622 aa24.21■■□□□ 1.47
GCN1-206ENST00000549815 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.46
GCN1-206ENST00000549815 RIMBP3CA6NJZ7 1639 aa24.19■■□□□ 1.46
GCN1-206ENST00000549815 RIMBP3BA6NNM3 1639 aa24.19■■□□□ 1.46
GCN1-206ENST00000549815 RIMBP3Q9UFD9 1639 aa24.19■■□□□ 1.46
GCN1-206ENST00000549815 ARHGEF11O15085 1522 aa24.12■■□□□ 1.45
GCN1-206ENST00000549815 SNAPC4Q5SXM2 1469 aa24.1■■□□□ 1.45
GCN1-206ENST00000549815 FBLN2P98095 1184 aa24.06■■□□□ 1.44
GCN1-206ENST00000549815 GRIN2BQ13224 1484 aa24.06■■□□□ 1.44
GCN1-206ENST00000549815 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
GCN1-206ENST00000549815 ABCA10Q8WWZ4 1543 aa24.04■■□□□ 1.44
GCN1-206ENST00000549815 ABCA5Q8WWZ7 1642 aa24■■□□□ 1.43
GCN1-206ENST00000549815 PBRM1Q86U86 1689 aa24■■□□□ 1.43
GCN1-206ENST00000549815 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
GCN1-206ENST00000549815 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
GCN1-206ENST00000549815 TOP2BQ02880 1626 aa23.98■■□□□ 1.43
GCN1-206ENST00000549815 CLASP1Q7Z460 1538 aa23.96■■□□□ 1.43
GCN1-206ENST00000549815 SYNJ2O15056 1496 aa23.96■■□□□ 1.43
GCN1-206ENST00000549815 SYNJ1O43426 1573 aa23.95■■□□□ 1.43
GCN1-206ENST00000549815 WRNQ14191 1432 aaPredicted RBP eCLIP23.95■■□□□ 1.42
GCN1-206ENST00000549815 CHMP7Q8WUX9 453 aaPredicted RBP23.94■■□□□ 1.42
GCN1-206ENST00000549815 ARAP1Q96P48 1450 aa23.91■■□□□ 1.42
GCN1-206ENST00000549815 CYB5RLQ6IPT4 315 aa23.87■■□□□ 1.41
GCN1-206ENST00000549815 ADAMTS12P58397 1594 aa23.79■■□□□ 1.4
GCN1-206ENST00000549815 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
GCN1-206ENST00000549815 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
GCN1-206ENST00000549815 FHAD1B1AJZ9 1412 aa23.71■■□□□ 1.39
GCN1-206ENST00000549815 NUP160Q12769 1436 aa23.69■■□□□ 1.38
GCN1-206ENST00000549815 CEP170Q5SW79 1584 aa23.69■■□□□ 1.38
GCN1-206ENST00000549815 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
GCN1-206ENST00000549815 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
GCN1-206ENST00000549815 TRHP20396 242 aaPredicted RBP23.5■■□□□ 1.35
GCN1-206ENST00000549815 IGF1RP08069 1367 aa23.47■■□□□ 1.35
GCN1-206ENST00000549815 KIF27Q86VH2 1401 aa23.47■■□□□ 1.35
GCN1-206ENST00000549815 RUSC2Q8N2Y8 1516 aa23.45■■□□□ 1.34
GCN1-206ENST00000549815 CUL7Q14999 1698 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms