Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AXIN1-203ENST00000457798 334 ntTSL 317.3■□□□□ 0.362e-6■■□□□ 12
DDX55Q8NHQ9 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.21■□□□□ 0.352e-6■■□□□ 12
DDX55Q8NHQ9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.07■□□□□ 0.321e-6■■□□□ 12
DDX55Q8NHQ9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.323e-12■■□□□ 12
DDX55Q8NHQ9 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.311e-6■■□□□ 12
DDX55Q8NHQ9 DNAJB2-213ENST00000477917 4487 ntTSL 216.96■□□□□ 0.312e-6■■□□□ 12
DDX55Q8NHQ9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.242e-6■■□□□ 12
DDX55Q8NHQ9 SH3TC1-204ENST00000502350 2258 ntTSL 215.72■□□□□ 0.112e-6■■□□□ 12
DDX55Q8NHQ9 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.11e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.081e-8■■□□□ 12
DDX55Q8NHQ9 TMEM214-211ENST00000475258 927 ntTSL 215.22■□□□□ 0.032e-6■■□□□ 12
DDX55Q8NHQ9 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 02e-6■■□□□ 12
DDX55Q8NHQ9 TINAGL1-210ENST00000498429 904 ntTSL 314.96□□□□□ -0.012e-6■■□□□ 12
DDX55Q8NHQ9 SH3TC1-225ENST00000515682 4293 ntTSL 214.46□□□□□ -0.092e-6■■□□□ 12
DDX55Q8NHQ9 TINAGL1-206ENST00000468635 827 ntTSL 514.44□□□□□ -0.12e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-208ENST00000422029 694 ntTSL 314.14□□□□□ -0.151e-8■■□□□ 12
DDX55Q8NHQ9 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.172e-6■■□□□ 12
DDX55Q8NHQ9 SH3TC1-205ENST00000502559 3798 ntTSL 213.82□□□□□ -0.22e-6■■□□□ 12
DDX55Q8NHQ9 PRMT2-213ENST00000486520 4031 ntTSL 213.41□□□□□ -0.262e-6■■□□□ 12
DDX55Q8NHQ9 COPS9-204ENST00000491765 619 ntTSL 213.32□□□□□ -0.282e-6■■□□□ 12
DDX55Q8NHQ9 UBXN4-201ENST00000272638 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.322e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-209ENST00000451517 445 ntTSL 1 (best)12.89□□□□□ -0.351e-8■■□□□ 12
DDX55Q8NHQ9 NDUFA3-210ENST00000471292 646 ntTSL 2 BASIC12.89□□□□□ -0.351e-8■■□□□ 12
DDX55Q8NHQ9 PRMT2-205ENST00000397637 2880 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.442e-6■■□□□ 12
DDX55Q8NHQ9 TNRC6A-205ENST00000464539 1853 ntTSL 1 (best)12.24□□□□□ -0.452e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-212ENST00000554546 3607 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.462e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-202ENST00000356296 3453 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.572e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-202ENST00000391762 435 ntTSL 5 BASIC11.31□□□□□ -0.61e-8■■□□□ 12
DDX55Q8NHQ9 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC10.97□□□□□ -0.652e-6■■□□□ 12
DDX55Q8NHQ9 ERF-205ENST00000595941 227 ntTSL 49.6□□□□□ -0.872e-6■■□□□ 12
DDX55Q8NHQ9 TNRC6A-203ENST00000450465 3700 ntTSL 29.49□□□□□ -0.892e-6■■□□□ 12
DDX55Q8NHQ9 USP13-203ENST00000496897 2747 ntTSL 2 BASIC8.91□□□□□ -0.982e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC8.84□□□□□ -0.992e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-205ENST00000544991 2757 ntTSL 5 BASIC8.67□□□□□ -1.022e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC8.53□□□□□ -1.042e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC7.71□□□□□ -1.172e-6■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.193e-12■■□□□ 12
DDX55Q8NHQ9 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.22e-6■■□□□ 12
DDX55Q8NHQ9 TRA2A-210ENST00000497730 455 ntTSL 37.46□□□□□ -1.225e-42■■□□□ 12
DDX55Q8NHQ9 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.252e-6■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.263e-12■■□□□ 12
DDX55Q8NHQ9 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.08□□□□□ -1.282e-6■■□□□ 12
DDX55Q8NHQ9 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.312e-6■■□□□ 12
DDX55Q8NHQ9 USP13-204ENST00000497155 899 ntTSL 36.1□□□□□ -1.432e-6■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-213ENST00000638800 7078 ntTSL 55.88□□□□□ -1.473e-12■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-212ENST00000495527 8404 ntTSL 1 (best)5.74□□□□□ -1.493e-12■■□□□ 12
DDX55Q8NHQ9 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.69□□□□□ -1.53e-12■■□□□ 12
DDX55Q8NHQ9 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.53e-7■■□□□ 12
DDX55Q8NHQ9 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.543e-12■■□□□ 12
DDX55Q8NHQ9 TRA2A-205ENST00000475970 394 ntTSL 24.98□□□□□ -1.615e-42■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.713e-12■■□□□ 12
DDX55Q8NHQ9 ZC3H11A-215ENST00000640465 4365 ntTSL 1 (best)4.13□□□□□ -1.753e-12■■□□□ 12
DDX55Q8NHQ9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.12□□□□□ -1.752e-6■■□□□ 12
DDX55Q8NHQ9 COX7B-201ENST00000373335 497 ntTSL 24.06□□□□□ -1.762e-6■■□□□ 12
DDX55Q8NHQ9 UBXN4-208ENST00000490163 3394 ntTSL 23.51□□□□□ -1.852e-6■■□□□ 12
DDX55Q8NHQ9 CTBP1-215ENST00000514596 648 ntTSL 222.72■■□□□ 1.238e-11■■□□□ 12
DDX55Q8NHQ9 RPL35-203ENST00000487431 785 ntTSL 1 (best)26.78■■□□□ 1.881e-63■■□□□ 12
DDX55Q8NHQ9 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.55■□□□□ 0.41e-63■■□□□ 12
DDX55Q8NHQ9 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.41e-63■■□□□ 12
DDX55Q8NHQ9 RPL35-204ENST00000493018 692 ntTSL 315.69■□□□□ 0.11e-63■■□□□ 12
DDX55Q8NHQ9 RPL35-202ENST00000373570 493 ntTSL 3 BASIC11.61□□□□□ -0.551e-63■■□□□ 12
DDX55Q8NHQ9 EGFL7-205ENST00000490469 456 ntTSL 520.83■□□□□ 0.935e-8■■□□□ 12
DDX55Q8NHQ9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.63■□□□□ 0.892e-13■■□□□ 11.9
DDX55Q8NHQ9 CYBA-204ENST00000563526 1052 ntTSL 219.15■□□□□ 0.662e-13■■□□□ 11.9
DDX55Q8NHQ9 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.2■□□□□ 0.52e-13■■□□□ 11.9
DDX55Q8NHQ9 CYBA-209ENST00000568278 439 ntTSL 515.98■□□□□ 0.152e-13■■□□□ 11.9
DDX55Q8NHQ9 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.58e-9■■□□□ 11.9
DDX55Q8NHQ9 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.88e-9■■□□□ 11.9
DDX55Q8NHQ9 ABCA2-211ENST00000464520 886 ntTSL 230.16■■■□□ 2.423e-10■■□□□ 11.9
DDX55Q8NHQ9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.12e-7■■□□□ 11.9
DDX55Q8NHQ9 TECR-204ENST00000594545 735 ntTSL 325.64■■□□□ 1.71e-8■■□□□ 11.9
DDX55Q8NHQ9 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 323.69■■□□□ 1.383e-10■■□□□ 11.9
DDX55Q8NHQ9 MDC1-206ENST00000489540 1402 ntTSL 221.04■□□□□ 0.963e-10■■□□□ 11.9
DDX55Q8NHQ9 EIF1-202ENST00000462917 2170 ntTSL 1 (best)20.54■□□□□ 0.881e-12■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.74■□□□□ 0.753e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.74■□□□□ 0.753e-10■■□□□ 11.9
DDX55Q8NHQ9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.583e-10■■□□□ 11.9
DDX55Q8NHQ9 ANKRD13B-203ENST00000488766 2671 ntTSL 518.69■□□□□ 0.583e-10■■□□□ 11.9
DDX55Q8NHQ9 SLC3A2-212ENST00000538682 1368 ntTSL 1 (best)18.55■□□□□ 0.563e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.443e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.77■□□□□ 0.443e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.77■□□□□ 0.443e-10■■□□□ 11.9
DDX55Q8NHQ9 ANKRD13B-204ENST00000493506 2465 ntTSL 217.12■□□□□ 0.333e-10■■□□□ 11.9
DDX55Q8NHQ9 ANKRD13B-202ENST00000487527 3023 ntTSL 1 (best)16■□□□□ 0.153e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC15.88■□□□□ 0.133e-10■■□□□ 11.9
DDX55Q8NHQ9 VPS28-216ENST00000533806 650 ntTSL 315.8■□□□□ 0.121e-8■■□□□ 11.9
DDX55Q8NHQ9 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.033e-10■■□□□ 11.9
DDX55Q8NHQ9 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.033e-10■■□□□ 11.9
DDX55Q8NHQ9 SLC3A2-205ENST00000457660 873 ntTSL 514.32□□□□□ -0.123e-10■■□□□ 11.9
DDX55Q8NHQ9 TECR-224ENST00000601461 828 ntTSL 313.64□□□□□ -0.231e-8■■□□□ 11.9
DDX55Q8NHQ9 SLC3A2-215ENST00000539891 1300 ntTSL 1 (best)13.24□□□□□ -0.293e-10■■□□□ 11.9
DDX55Q8NHQ9 SLC3A2-217ENST00000541425 595 ntTSL 513.16□□□□□ -0.33e-10■■□□□ 11.9
DDX55Q8NHQ9 TECR-215ENST00000598918 314 ntTSL 313.07□□□□□ -0.321e-8■■□□□ 11.9
DDX55Q8NHQ9 SRSF4-208ENST00000634348 8128 ntTSL 513.07□□□□□ -0.323e-10■■□□□ 11.9
DDX55Q8NHQ9 TECR-214ENST00000598715 541 ntTSL 512.73□□□□□ -0.371e-8■■□□□ 11.9
DDX55Q8NHQ9 ZC3H3-201ENST00000262577 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.413e-10■■□□□ 11.9
DDX55Q8NHQ9 SEC61A1-201ENST00000243253 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.453e-10■■□□□ 11.9
DDX55Q8NHQ9 SEC61A1-205ENST00000483956 3046 ntTSL 1 (best)12.18□□□□□ -0.463e-10■■□□□ 11.9
DDX55Q8NHQ9 MDC1-201ENST00000376406 7576 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.513e-10■■□□□ 11.9
DDX55Q8NHQ9 SEC61A1-202ENST00000424880 3238 ntTSL 2 BASIC11.79□□□□□ -0.523e-10■■□□□ 11.9
Retrieved 100 of 15,504 protein–RNA pairs in 126.9 ms