RNA–Protein interactions for RNA: ENST00000376406.7

MDC1-201, Transcript of mediator of DNA damage checkpoint 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene MDC1, Length 7,576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-201ENST00000376406 NISCHQ9Y2I1 1504 aa19.08■□□□□ 0.64
MDC1-201ENST00000376406 DCAF8L2P0C7V8 631 aa19.04■□□□□ 0.64
MDC1-201ENST00000376406 SUPT5HO00267 1087 aaKnown RBP18.02■□□□□ 0.47
MDC1-201ENST00000376406 SHROOM4Q9ULL8 1493 aa17.85■□□□□ 0.45
MDC1-201ENST00000376406 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
MDC1-201ENST00000376406 APLP2Q06481 763 aa17.23■□□□□ 0.35
MDC1-201ENST00000376406 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
MDC1-201ENST00000376406 PELP1Q8IZL8 1130 aaKnown RBP17.02■□□□□ 0.32
MDC1-201ENST00000376406 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
MDC1-201ENST00000376406 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
MDC1-201ENST00000376406 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
MDC1-201ENST00000376406 TTBK1Q5TCY1 1321 aaPredicted RBP16.68■□□□□ 0.26
MDC1-201ENST00000376406 CCER1Q8TC90 406 aaPredicted RBP16.59■□□□□ 0.25
MDC1-201ENST00000376406 CENPBP07199 599 aaPredicted RBP16.58■□□□□ 0.24
MDC1-201ENST00000376406 UBTFP17480 764 aaKnown RBP16.5■□□□□ 0.23
MDC1-201ENST00000376406 RANGAP1P46060 587 aaPredicted RBP16.49■□□□□ 0.23
MDC1-201ENST00000376406 ATP1B4Q9UN42 357 aaPredicted RBP16.49■□□□□ 0.23
MDC1-201ENST00000376406 ABCC9O60706 1549 aa16.46■□□□□ 0.23
MDC1-201ENST00000376406 CCDC180Q9P1Z9 1646 aa16.45■□□□□ 0.22
MDC1-201ENST00000376406 TRIM26Q12899 539 aaPredicted RBP16.4■□□□□ 0.22
MDC1-201ENST00000376406 CHIC1Q5VXU3 224 aa16.24■□□□□ 0.19
MDC1-201ENST00000376406 HRCP23327 699 aa16.23■□□□□ 0.19
MDC1-201ENST00000376406 ERICH6Q7L0X2 663 aa16.21■□□□□ 0.19
MDC1-201ENST00000376406 PPARGC1BQ86YN6 1023 aaKnown RBP16.17■□□□□ 0.18
MDC1-201ENST00000376406 MYT1LQ9UL68 1186 aa16.13■□□□□ 0.17
MDC1-201ENST00000376406 NEFLP07196 543 aa16.12■□□□□ 0.17
MDC1-201ENST00000376406 LOC105371045A0A1W2PR82 267 aa16.12■□□□□ 0.17
MDC1-201ENST00000376406 YTHDC1Q96MU7 727 aaKnown RBP16.11■□□□□ 0.17
MDC1-201ENST00000376406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.1■□□□□ 0.17
MDC1-201ENST00000376406 HNRNPUL2Q1KMD3 747 aaKnown RBP16.1■□□□□ 0.17
MDC1-201ENST00000376406 PABPN1Q86U42 306 aaKnown RBP eCLIP16.02■□□□□ 0.166e-6■■□□□ 12.8
MDC1-201ENST00000376406 MYT1Q01538 1121 aa16.02■□□□□ 0.15
MDC1-201ENST00000376406 RB1CC1Q8TDY2 1594 aa15.97■□□□□ 0.15
MDC1-201ENST00000376406 ITGAEP38570 1179 aa15.87■□□□□ 0.13
MDC1-201ENST00000376406 SCRIBQ14160 1630 aa15.85■□□□□ 0.13
MDC1-201ENST00000376406 NACADO15069 1562 aa15.8■□□□□ 0.12
MDC1-201ENST00000376406 ZCCHC6Q5VYS8 1495 aaKnown RBP15.79■□□□□ 0.12
MDC1-201ENST00000376406 DIEXFQ68CQ4 756 aaKnown RBP15.73■□□□□ 0.11
MDC1-201ENST00000376406 FBLN2P98095 1184 aa15.65■□□□□ 0.1
MDC1-201ENST00000376406 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
MDC1-201ENST00000376406 FAM50AQ14320 339 aaKnown RBP15.6■□□□□ 0.09
MDC1-201ENST00000376406 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.09
MDC1-201ENST00000376406 DAXXQ9UER7 740 aaPredicted RBP15.56■□□□□ 0.08
MDC1-201ENST00000376406 DCAF1Q9Y4B6 1507 aa15.53■□□□□ 0.08
MDC1-201ENST00000376406 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
MDC1-201ENST00000376406 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
MDC1-201ENST00000376406 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
MDC1-201ENST00000376406 NEUROD1Q13562 356 aa15.44■□□□□ 0.06
MDC1-201ENST00000376406 ESF1Q9H501 851 aaKnown RBP15.43■□□□□ 0.06
MDC1-201ENST00000376406 CSRNP3Q8WYN3 585 aa15.42■□□□□ 0.06
MDC1-201ENST00000376406 ZNF316A6NFI3 1004 aaPredicted RBP15.42■□□□□ 0.06
MDC1-201ENST00000376406 CNGB1Q14028 1251 aaPredicted RBP15.4■□□□□ 0.06
MDC1-201ENST00000376406 ANP32CO43423 234 aa15.37■□□□□ 0.05
MDC1-201ENST00000376406 GTF3C3Q9Y5Q9 886 aa15.34■□□□□ 0.05
MDC1-201ENST00000376406 BAZ1BQ9UIG0 1483 aaKnown RBP15.29■□□□□ 0.04
MDC1-201ENST00000376406 BCANQ96GW7 911 aa15.27■□□□□ 0.04
MDC1-201ENST00000376406 RTL5Q5HYW3 569 aaPredicted RBP15.25■□□□□ 0.03
MDC1-201ENST00000376406 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
MDC1-201ENST00000376406 ACIN1Q9UKV3 1341 aaKnown RBP15.24■□□□□ 0.03
MDC1-201ENST00000376406 ERCC6Q03468 1493 aa15.24■□□□□ 0.03
MDC1-201ENST00000376406 NEFMP07197 916 aa15.23■□□□□ 0.03
MDC1-201ENST00000376406 CHMP7Q8WUX9 453 aaPredicted RBP15.23■□□□□ 0.03
MDC1-201ENST00000376406 CLSPNQ9HAW4 1339 aa15.21■□□□□ 0.02
MDC1-201ENST00000376406 P3H3Q8IVL6 736 aa15.19■□□□□ 0.02
MDC1-201ENST00000376406 ZNF326Q5BKZ1 582 aaKnown RBP15.18■□□□□ 0.02
MDC1-201ENST00000376406 STAG3Q9UJ98 1225 aa15.15■□□□□ 0.02
MDC1-201ENST00000376406 MYO15BQ96JP2 1530 aa15.15■□□□□ 0.02
MDC1-201ENST00000376406 EEA1Q15075 1411 aa15.15■□□□□ 0.02
MDC1-201ENST00000376406 ZNF777Q9ULD5 760 aaPredicted RBP15.11■□□□□ 0.01
MDC1-201ENST00000376406 SMARCA2P51531 1590 aa15.11■□□□□ 0.01
MDC1-201ENST00000376406 RSF1Q96T23 1441 aaPredicted RBP15.11■□□□□ 0.01
MDC1-201ENST00000376406 ZBTB47Q9UFB7 747 aaPredicted RBP15.09■□□□□ 0.01
MDC1-201ENST00000376406 TONSLQ96HA7 1378 aa15.07■□□□□ 0
MDC1-201ENST00000376406 GOLGA3Q08378 1498 aa15.06■□□□□ 0
MDC1-201ENST00000376406 TSPY4P0CV99 314 aa15.04■□□□□ -0
MDC1-201ENST00000376406 TSPY10P0CW01 314 aa15.04■□□□□ -0
MDC1-201ENST00000376406 CLIP1P30622 1438 aa15.03■□□□□ -0
MDC1-201ENST00000376406 ARID3CA6NKF2 412 aa15.02■□□□□ -0
MDC1-201ENST00000376406 KIF27Q86VH2 1401 aa15.01□□□□□ -0.01
MDC1-201ENST00000376406 MTUS2Q5JR59 1369 aa15□□□□□ -0.01
MDC1-201ENST00000376406 CEP162Q5TB80 1403 aa14.98□□□□□ -0.01
MDC1-201ENST00000376406 CANXP27824 592 aaKnown RBP14.97□□□□□ -0.01
MDC1-201ENST00000376406 PDS5BQ9NTI5 1447 aa14.93□□□□□ -0.02
MDC1-201ENST00000376406 PLEKHD1A6NEE1 506 aa14.93□□□□□ -0.02
MDC1-201ENST00000376406 WRNQ14191 1432 aaPredicted RBP eCLIP14.92□□□□□ -0.02
MDC1-201ENST00000376406 ANP32AP39687 249 aaKnown RBP14.92□□□□□ -0.02
MDC1-201ENST00000376406 SLC24A1O60721 1099 aa14.91□□□□□ -0.02
MDC1-201ENST00000376406 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
MDC1-201ENST00000376406 CHGAP10645 457 aaKnown RBP14.9□□□□□ -0.02
MDC1-201ENST00000376406 FKBP8Q14318 412 aa14.89□□□□□ -0.03
MDC1-201ENST00000376406 DDX10Q13206 875 aaKnown RBP14.88□□□□□ -0.03
MDC1-201ENST00000376406 TNIKQ9UKE5 1360 aa14.87□□□□□ -0.03
MDC1-201ENST00000376406 HNRNPUQ00839 825 aaKnown RBP eCLIP14.84□□□□□ -0.03
MDC1-201ENST00000376406 CHIC2Q9UKJ5 165 aa14.8□□□□□ -0.04
MDC1-201ENST00000376406 FHAD1B1AJZ9 1412 aa14.8□□□□□ -0.04
MDC1-201ENST00000376406 FAM9BQ8IZU0 186 aa14.79□□□□□ -0.04
MDC1-201ENST00000376406 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.78□□□□□ -0.048e-10■■■■□ 20.2
MDC1-201ENST00000376406 MIER1Q8N108 512 aa14.76□□□□□ -0.05
MDC1-201ENST00000376406 PLPPR3Q6T4P5 718 aa14.76□□□□□ -0.05
MDC1-201ENST00000376406 CARMIL2Q6F5E8 1435 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms