RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 CHIC1Q5VXU3 224 aa10.14□□□□□ -0.79
UBXN4-208ENST00000490163 AEBP2Q6ZN18 517 aaPredicted RBP9.74□□□□□ -0.85
UBXN4-208ENST00000490163 PHF23Q9BUL5 403 aaPredicted RBP9.03□□□□□ -0.96
UBXN4-208ENST00000490163 PLPPR3Q6T4P5 718 aa8.33□□□□□ -1.08
UBXN4-208ENST00000490163 SENP3Q9H4L4 574 aaPredicted RBP8.03□□□□□ -1.12
UBXN4-208ENST00000490163 DNAJC5BQ9UF47 199 aa7.87□□□□□ -1.15
UBXN4-208ENST00000490163 KCNA4P22459 653 aa7.84□□□□□ -1.16
UBXN4-208ENST00000490163 CSRNP3Q8WYN3 585 aa7.81□□□□□ -1.16
UBXN4-208ENST00000490163 ADRA2BP18089 450 aa7.68□□□□□ -1.18
UBXN4-208ENST00000490163 POTEDQ86YR6 584 aa7.68□□□□□ -1.18
UBXN4-208ENST00000490163 PPP6R1Q9UPN7 881 aa7.58□□□□□ -1.2
UBXN4-208ENST00000490163 EHMT2Q96KQ7 1210 aa7.56□□□□□ -1.2
UBXN4-208ENST00000490163 SLC24A1O60721 1099 aa7.52□□□□□ -1.21
UBXN4-208ENST00000490163 SLC4A1APQ9BWU0 796 aaKnown RBP7.47□□□□□ -1.21
UBXN4-208ENST00000490163 ZBTB22O15209 634 aa7.44□□□□□ -1.22
UBXN4-208ENST00000490163 FOXD1Q16676 465 aa7.4□□□□□ -1.22
UBXN4-208ENST00000490163 PPP4R3CPQ6ZMV5 832 aa7.38□□□□□ -1.23
UBXN4-208ENST00000490163 AMER1Q5JTC6 1135 aaPredicted RBP7.37□□□□□ -1.23
UBXN4-208ENST00000490163 NPM3O75607 178 aaKnown RBP7.33□□□□□ -1.24
UBXN4-208ENST00000490163 NCBP3Q53F19 620 aaKnown RBP7.29□□□□□ -1.24
UBXN4-208ENST00000490163 RTN4Q9NQC3 1192 aaKnown RBP7.23□□□□□ -1.25
UBXN4-208ENST00000490163 CNKSR2Q8WXI2 1034 aa7.16□□□□□ -1.26
UBXN4-208ENST00000490163 MSH5O43196 834 aa7.14□□□□□ -1.27
UBXN4-208ENST00000490163 ATXN8OSP0DMR3 200 aa7.12□□□□□ -1.27
UBXN4-208ENST00000490163 FOXD4L1Q9NU39 408 aa7.11□□□□□ -1.27
UBXN4-208ENST00000490163 RNF216Q9NWF9 866 aaPredicted RBP6.98□□□□□ -1.29
UBXN4-208ENST00000490163 HOXD11P31277 338 aaPredicted RBP6.91□□□□□ -1.3
UBXN4-208ENST00000490163 PROM2Q8N271 834 aa6.9□□□□□ -1.3
UBXN4-208ENST00000490163 SLC4A2P04920 1241 aa6.89□□□□□ -1.31
UBXN4-208ENST00000490163 PIAS4Q8N2W9 510 aaPredicted RBP6.88□□□□□ -1.31
UBXN4-208ENST00000490163 SCAF1Q9H7N4 1312 aaKnown RBP6.81□□□□□ -1.32
UBXN4-208ENST00000490163 DNAJC5Q9H3Z4 198 aa6.76□□□□□ -1.33
UBXN4-208ENST00000490163 PLCB2Q00722 1185 aa6.75□□□□□ -1.33
UBXN4-208ENST00000490163 MYCNP04198 464 aaPredicted RBP6.73□□□□□ -1.33
UBXN4-208ENST00000490163 DMRT2Q9Y5R5 561 aa6.68□□□□□ -1.34
UBXN4-208ENST00000490163 VSIG10Q8N0Z9 540 aa6.67□□□□□ -1.34
UBXN4-208ENST00000490163 FKBP8Q14318 412 aa6.65□□□□□ -1.35
UBXN4-208ENST00000490163 TAOK2Q9UL54 1235 aa6.58□□□□□ -1.36
UBXN4-208ENST00000490163 BCANQ96GW7 911 aa6.57□□□□□ -1.36
UBXN4-208ENST00000490163 MAPK8IP2Q13387 824 aaPredicted RBP6.56□□□□□ -1.36
UBXN4-208ENST00000490163 ATF5Q9Y2D1 282 aaPredicted RBP6.54□□□□□ -1.36
UBXN4-208ENST00000490163 PKD2Q13563 968 aa6.51□□□□□ -1.37
UBXN4-208ENST00000490163 KDM2AQ9Y2K7 1162 aa6.48□□□□□ -1.37
UBXN4-208ENST00000490163 CACNB1Q02641 598 aaPredicted RBP6.48□□□□□ -1.37
UBXN4-208ENST00000490163 BBXQ8WY36 941 aaPredicted RBP6.45□□□□□ -1.38
UBXN4-208ENST00000490163 FBXO3Q9UK99 471 aa6.44□□□□□ -1.38
UBXN4-208ENST00000490163 ARXQ96QS3 562 aa6.43□□□□□ -1.38
UBXN4-208ENST00000490163 IFNLR1Q8IU57 520 aaPredicted RBP6.41□□□□□ -1.38
UBXN4-208ENST00000490163 DAXXQ9UER7 740 aaPredicted RBP6.4□□□□□ -1.38
UBXN4-208ENST00000490163 PRKCSHP14314 528 aaPredicted RBP6.39□□□□□ -1.39
UBXN4-208ENST00000490163 MKRN4PQ13434 485 aaPredicted RBP6.37□□□□□ -1.39
UBXN4-208ENST00000490163 NPM1P06748 294 aaKnown RBP eCLIP6.36□□□□□ -1.39
UBXN4-208ENST00000490163 VASPP50552 380 aaPredicted RBP6.35□□□□□ -1.39
UBXN4-208ENST00000490163 ERICH6Q7L0X2 663 aa6.35□□□□□ -1.39
UBXN4-208ENST00000490163 SAMD1Q6SPF0 538 aaPredicted RBP6.32□□□□□ -1.4
UBXN4-208ENST00000490163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.32□□□□□ -1.4
UBXN4-208ENST00000490163 HNRNPUL2Q1KMD3 747 aaKnown RBP6.32□□□□□ -1.4
UBXN4-208ENST00000490163 U3KPZ7 1027 aaPredicted RBP6.3□□□□□ -1.4
UBXN4-208ENST00000490163 ZNF219Q9P2Y4 722 aaPredicted RBP6.29□□□□□ -1.4
UBXN4-208ENST00000490163 TIMELESSQ9UNS1 1208 aa6.28□□□□□ -1.4
UBXN4-208ENST00000490163 TMEM132AQ24JP5 1023 aa6.26□□□□□ -1.41
UBXN4-208ENST00000490163 FBLN2P98095 1184 aa6.25□□□□□ -1.41
UBXN4-208ENST00000490163 HAP1P54257 671 aaPredicted RBP6.24□□□□□ -1.41
UBXN4-208ENST00000490163 SPDYE4A6NLX3 237 aa6.24□□□□□ -1.41
UBXN4-208ENST00000490163 TPRNQ4KMQ1 711 aa6.22□□□□□ -1.41
UBXN4-208ENST00000490163 SGIP1Q9BQI5 828 aa6.18□□□□□ -1.42
UBXN4-208ENST00000490163 GTF3C3Q9Y5Q9 886 aa6.17□□□□□ -1.42
UBXN4-208ENST00000490163 HS6ST3Q8IZP7 471 aa6.15□□□□□ -1.43
UBXN4-208ENST00000490163 DCAF8L1A6NGE4 600 aa6.14□□□□□ -1.43
UBXN4-208ENST00000490163 SPOCK2Q92563 424 aa6.12□□□□□ -1.43
UBXN4-208ENST00000490163 TSHZ2Q9NRE2 1034 aa6.1□□□□□ -1.43
UBXN4-208ENST00000490163 TRIM41Q8WV44 630 aa6.09□□□□□ -1.43
UBXN4-208ENST00000490163 STAG3Q9UJ98 1225 aa6.09□□□□□ -1.44
UBXN4-208ENST00000490163 RGL2O15211 777 aa6.07□□□□□ -1.44
UBXN4-208ENST00000490163 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.07□□□□□ -1.44
UBXN4-208ENST00000490163 APLP2Q06481 763 aa6.07□□□□□ -1.44
UBXN4-208ENST00000490163 SSUH2Q9Y2M2 353 aa6.06□□□□□ -1.44
UBXN4-208ENST00000490163 SPRYD3Q8NCJ5 442 aa6.06□□□□□ -1.44
UBXN4-208ENST00000490163 CHRM1P11229 460 aaPredicted RBP6.06□□□□□ -1.44
UBXN4-208ENST00000490163 HOMEZQ8IX15 550 aa6.02□□□□□ -1.45
UBXN4-208ENST00000490163 GTPBP6O43824 516 aaPredicted RBP6.02□□□□□ -1.45
UBXN4-208ENST00000490163 NKX1-1Q15270 411 aaPredicted RBP6.02□□□□□ -1.45
UBXN4-208ENST00000490163 TULP1O00294 542 aaPredicted RBP6.01□□□□□ -1.45
UBXN4-208ENST00000490163 PAXIP1Q6ZW49 1069 aaPredicted RBP6.01□□□□□ -1.45
UBXN4-208ENST00000490163 ECM2O94769 699 aaPredicted RBP5.98□□□□□ -1.45
UBXN4-208ENST00000490163 RNF39Q9H2S5 420 aa5.98□□□□□ -1.45
UBXN4-208ENST00000490163 POTEHQ6S545 545 aa5.97□□□□□ -1.45
UBXN4-208ENST00000490163 ARIH1Q9Y4X5 557 aaPredicted RBP5.97□□□□□ -1.45
UBXN4-208ENST00000490163 RNF25Q96BH1 459 aaPredicted RBP5.96□□□□□ -1.46
UBXN4-208ENST00000490163 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.94□□□□□ -1.46
UBXN4-208ENST00000490163 C1QBPQ07021 282 aaKnown RBP5.93□□□□□ -1.46
UBXN4-208ENST00000490163 ZBTB12Q9Y330 459 aaPredicted RBP5.92□□□□□ -1.46
UBXN4-208ENST00000490163 NUBP1P53384 320 aa5.91□□□□□ -1.46
UBXN4-208ENST00000490163 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.91□□□□□ -1.465e-8■■■□□ 18.1
UBXN4-208ENST00000490163 BRPF1P55201 1214 aaPredicted RBP5.89□□□□□ -1.47
UBXN4-208ENST00000490163 MNX1P50219 401 aaPredicted RBP5.87□□□□□ -1.47
UBXN4-208ENST00000490163 CFAP44Q96MT7 982 aa5.85□□□□□ -1.47
UBXN4-208ENST00000490163 SPDYE2BA6NHP3 402 aa5.82□□□□□ -1.48
UBXN4-208ENST00000490163 ZMYND10O75800 440 aa5.82□□□□□ -1.48
UBXN4-208ENST00000490163 SPDYE6P0CI01 402 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms