RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 NISCHQ9Y2I1 1504 aa41.98■■■■■ 4.31
MDC1-206ENST00000489540 CCDC180Q9P1Z9 1646 aa37.21■■■■□ 3.55
MDC1-206ENST00000489540 ABCC9O60706 1549 aa36.55■■■■□ 3.44
MDC1-206ENST00000489540 DCAF8L2P0C7V8 631 aa35.22■■■■□ 3.23
MDC1-206ENST00000489540 RB1CC1Q8TDY2 1594 aa35.13■■■■□ 3.21
MDC1-206ENST00000489540 NACADO15069 1562 aa35.11■■■■□ 3.21
MDC1-206ENST00000489540 ZCCHC6Q5VYS8 1495 aaKnown RBP34.94■■■■□ 3.18
MDC1-206ENST00000489540 MYO15BQ96JP2 1530 aa34.92■■■■□ 3.18
MDC1-206ENST00000489540 DCAF1Q9Y4B6 1507 aa34.74■■■■□ 3.15
MDC1-206ENST00000489540 PABPN1Q86U42 306 aaKnown RBP eCLIP34.23■■■■□ 3.076e-6■■□□□ 12.8
MDC1-206ENST00000489540 UNC13AQ9UPW8 1703 aa34.13■■■■□ 3.05
MDC1-206ENST00000489540 BICRAQ9NZM4 1560 aa34.01■■■■□ 3.04
MDC1-206ENST00000489540 SCRIBQ14160 1630 aa33.98■■■■□ 3.03
MDC1-206ENST00000489540 SHROOM4Q9ULL8 1493 aa33.74■■■□□ 2.99
MDC1-206ENST00000489540 DNAJC5BQ9UF47 199 aa33.64■■■□□ 2.98
MDC1-206ENST00000489540 EIF4G1Q04637 1599 aaKnown RBP33.15■■■□□ 2.9
MDC1-206ENST00000489540 CC2D2AQ9P2K1 1620 aa33.01■■■□□ 2.87
MDC1-206ENST00000489540 CECR2Q9BXF3 1484 aa32.88■■■□□ 2.85
MDC1-206ENST00000489540 BAZ1AQ9NRL2 1556 aaPredicted RBP32.53■■■□□ 2.8
MDC1-206ENST00000489540 SMARCA4P51532 1647 aa32.51■■■□□ 2.79
MDC1-206ENST00000489540 NCAPD3P42695 1498 aa32.45■■■□□ 2.79
MDC1-206ENST00000489540 ATAD2BQ9ULI0 1458 aa32.43■■■□□ 2.78
MDC1-206ENST00000489540 SMARCA2P51531 1590 aa32.37■■■□□ 2.77
MDC1-206ENST00000489540 MROH2BQ7Z745 1585 aa32.33■■■□□ 2.77
MDC1-206ENST00000489540 PEG3Q9GZU2 1588 aa32.22■■■□□ 2.75
MDC1-206ENST00000489540 HMGXB3Q12766 1538 aa32.2■■■□□ 2.75
MDC1-206ENST00000489540 BAZ1BQ9UIG0 1483 aaKnown RBP32.15■■■□□ 2.74
MDC1-206ENST00000489540 RSF1Q96T23 1441 aaPredicted RBP32.01■■■□□ 2.72
MDC1-206ENST00000489540 WIZO95785 1651 aa31.91■■■□□ 2.7
MDC1-206ENST00000489540 TOP2AP11388 1531 aaKnown RBP31.63■■■□□ 2.65
MDC1-206ENST00000489540 NESP48681 1621 aa31.59■■■□□ 2.65
MDC1-206ENST00000489540 ERCC6Q03468 1493 aa31.54■■■□□ 2.64
MDC1-206ENST00000489540 CADPSQ9ULU8 1353 aa31.53■■■□□ 2.64
MDC1-206ENST00000489540 LAMC3Q9Y6N6 1575 aa31.51■■■□□ 2.64
MDC1-206ENST00000489540 PDS5BQ9NTI5 1447 aa31.41■■■□□ 2.62
MDC1-206ENST00000489540 CCDC88BA6NC98 1476 aa31.31■■■□□ 2.6
MDC1-206ENST00000489540 CFTRP13569 1480 aa31.29■■■□□ 2.6
MDC1-206ENST00000489540 SUPT5HO00267 1087 aaKnown RBP31.24■■■□□ 2.59
MDC1-206ENST00000489540 CUX2O14529 1486 aa31.21■■■□□ 2.59
MDC1-206ENST00000489540 FANCD2Q9BXW9 1451 aa31.11■■■□□ 2.57
MDC1-206ENST00000489540 KIF21AQ7Z4S6 1674 aa31.1■■■□□ 2.57
MDC1-206ENST00000489540 CEP164Q9UPV0 1460 aa31.05■■■□□ 2.56
MDC1-206ENST00000489540 THOC2Q8NI27 1593 aaKnown RBP31.04■■■□□ 2.56
MDC1-206ENST00000489540 MRC2Q9UBG0 1479 aa31.02■■■□□ 2.56
MDC1-206ENST00000489540 WDR62O43379 1518 aa30.88■■■□□ 2.53
MDC1-206ENST00000489540 PRDM2Q13029 1718 aa30.81■■■□□ 2.52
MDC1-206ENST00000489540 URB2Q14146 1524 aaKnown RBP30.76■■■□□ 2.51
MDC1-206ENST00000489540 ABCC8Q09428 1581 aa30.65■■■□□ 2.5
MDC1-206ENST00000489540 TOPBP1Q92547 1522 aa30.59■■■□□ 2.49
MDC1-206ENST00000489540 DNMBPQ6XZF7 1577 aa30.52■■■□□ 2.48
MDC1-206ENST00000489540 IFT140Q96RY7 1462 aa30.44■■■□□ 2.46
MDC1-206ENST00000489540 DNAJC5Q9H3Z4 198 aa30.39■■■□□ 2.45
MDC1-206ENST00000489540 POLA1P09884 1462 aaPredicted RBP30.33■■■□□ 2.45
MDC1-206ENST00000489540 CUX1P39880 1505 aa30.32■■■□□ 2.44
MDC1-206ENST00000489540 SOGA1O94964 1423 aa30.28■■■□□ 2.44
MDC1-206ENST00000489540 ZNF608Q9ULD9 1512 aaPredicted RBP30.26■■■□□ 2.43
MDC1-206ENST00000489540 FGD5Q6ZNL6 1462 aa30.24■■■□□ 2.43
MDC1-206ENST00000489540 RAD54L2Q9Y4B4 1467 aa30.2■■■□□ 2.43
MDC1-206ENST00000489540 WRNQ14191 1432 aaPredicted RBP eCLIP30.19■■■□□ 2.42
MDC1-206ENST00000489540 TARBP1Q13395 1621 aaKnown RBP30.19■■■□□ 2.42
MDC1-206ENST00000489540 AQRO60306 1485 aaKnown RBP eCLIP30.13■■■□□ 2.41
MDC1-206ENST00000489540 TDRD9Q8NDG6 1382 aaKnown RBP30.1■■■□□ 2.41
MDC1-206ENST00000489540 EIF4G3O43432 1585 aaKnown RBP30.06■■■□□ 2.4
MDC1-206ENST00000489540 TOP2BQ02880 1626 aa30.04■■■□□ 2.4
MDC1-206ENST00000489540 OSCARQ8IYS5 282 aa30.04■■■□□ 2.4
MDC1-206ENST00000489540 SYNJ1O43426 1573 aa30■■■□□ 2.39
MDC1-206ENST00000489540 WDR97A6NE52 1622 aa29.99■■■□□ 2.39
MDC1-206ENST00000489540 BIVM-ERCC5R4GMW8 1640 aa29.98■■■□□ 2.39
MDC1-206ENST00000489540 ABCA10Q8WWZ4 1543 aa29.97■■■□□ 2.39
MDC1-206ENST00000489540 GRIN2BQ13224 1484 aa29.89■■■□□ 2.38
MDC1-206ENST00000489540 GAPVD1Q14C86 1478 aa29.88■■■□□ 2.37
MDC1-206ENST00000489540 FBLN2P98095 1184 aa29.85■■■□□ 2.37
MDC1-206ENST00000489540 SNAPC4Q5SXM2 1469 aa29.81■■■□□ 2.36
MDC1-206ENST00000489540 MAGI1Q96QZ7 1491 aaPredicted RBP29.8■■■□□ 2.36
MDC1-206ENST00000489540 CHMP7Q8WUX9 453 aaPredicted RBP29.79■■■□□ 2.36
MDC1-206ENST00000489540 ABCA5Q8WWZ7 1642 aa29.76■■■□□ 2.35
MDC1-206ENST00000489540 SYNJ2O15056 1496 aa29.69■■■□□ 2.34
MDC1-206ENST00000489540 PBRM1Q86U86 1689 aa29.64■■■□□ 2.34
MDC1-206ENST00000489540 CHD1O14646 1710 aa29.62■■■□□ 2.33
MDC1-206ENST00000489540 ERICH3Q5RHP9 1530 aa29.6■■■□□ 2.33
MDC1-206ENST00000489540 KIF27Q86VH2 1401 aa29.59■■■□□ 2.33
MDC1-206ENST00000489540 FHAD1B1AJZ9 1412 aa29.56■■■□□ 2.32
MDC1-206ENST00000489540 TRIM41Q8WV44 630 aa29.54■■■□□ 2.32
MDC1-206ENST00000489540 IGF1RP08069 1367 aa29.49■■■□□ 2.31
MDC1-206ENST00000489540 ADAMTS12P58397 1594 aa29.48■■■□□ 2.31
MDC1-206ENST00000489540 GRIN2AQ12879 1464 aa29.47■■■□□ 2.31
MDC1-206ENST00000489540 CLASP1Q7Z460 1538 aa29.41■■■□□ 2.3
MDC1-206ENST00000489540 ARHGEF11O15085 1522 aa29.39■■■□□ 2.3
MDC1-206ENST00000489540 NUP160Q12769 1436 aa29.36■■■□□ 2.29
MDC1-206ENST00000489540 RIMBP3CA6NJZ7 1639 aa29.34■■■□□ 2.29
MDC1-206ENST00000489540 RIMBP3BA6NNM3 1639 aa29.34■■■□□ 2.29
MDC1-206ENST00000489540 RIMBP3Q9UFD9 1639 aa29.34■■■□□ 2.29
MDC1-206ENST00000489540 CARMIL1Q5VZK9 1371 aa29.31■■■□□ 2.28
MDC1-206ENST00000489540 CEP170Q5SW79 1584 aa29.27■■■□□ 2.28
MDC1-206ENST00000489540 CUL7Q14999 1698 aa29.26■■■□□ 2.27
MDC1-206ENST00000489540 CYB5RLQ6IPT4 315 aa29.25■■■□□ 2.27
MDC1-206ENST00000489540 RUSC2Q8N2Y8 1516 aa29.23■■■□□ 2.27
MDC1-206ENST00000489540 JPH4Q96JJ6 628 aa29.17■■■□□ 2.26
MDC1-206ENST00000489540 ARAP1Q96P48 1450 aa29.15■■■□□ 2.26
MDC1-206ENST00000489540 CHIC1Q5VXU3 224 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms