Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 PRKAR1A-216ENST00000589017 1116 ntTSL 324.94■■□□□ 1.584e-6■□□□□ 10.1
U2AF1Q01081 PRKAR1A-201ENST00000358598 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.124e-6■□□□□ 10.1
U2AF1Q01081 AC007780.1-201ENST00000590353 719 ntTSL 412.29□□□□□ -0.444e-6■□□□□ 10.1
U2AF1Q01081 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.93■■□□□ 1.13e-11■□□□□ 10.1
U2AF1Q01081 ARHGAP5-211ENST00000557643 872 ntTSL 36.96□□□□□ -1.32e-6■□□□□ 10.1
U2AF1Q01081 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.523e-8■□□□□ 10.1
U2AF1Q01081 RBM33-209ENST00000440108 1027 ntTSL 523.82■■□□□ 1.43e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-204ENST00000418304 1759 ntTSL 523.29■■□□□ 1.323e-8■□□□□ 10.1
U2AF1Q01081 RBM33-210ENST00000486747 559 ntTSL 322.79■■□□□ 1.243e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-208ENST00000466653 2315 ntTSL 222.56■■□□□ 1.23e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.71■□□□□ 0.753e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-207ENST00000462969 273 ntTSL 219.21■□□□□ 0.673e-8■□□□□ 10.1
U2AF1Q01081 NCAPG2-208ENST00000474940 583 ntTSL 417.63■□□□□ 0.413e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.413e-8■□□□□ 10.1
U2AF1Q01081 RBM33-206ENST00000392761 2934 ntTSL 217.03■□□□□ 0.323e-8■□□□□ 10.1
U2AF1Q01081 NCAPG2-209ENST00000475918 557 ntTSL 416.21■□□□□ 0.193e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-205ENST00000421364 5151 ntTSL 1 (best)15.79■□□□□ 0.123e-8■□□□□ 10.1
U2AF1Q01081 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)14.84□□□□□ -0.033e-8■□□□□ 10.1
U2AF1Q01081 PUM1-221ENST00000530669 582 ntTSL 313.93□□□□□ -0.183e-8■□□□□ 10.1
U2AF1Q01081 RBM33-202ENST00000307403 4360 ntTSL 213.84□□□□□ -0.193e-8■□□□□ 10.1
U2AF1Q01081 PUM1-212ENST00000498627 422 ntTSL 210.87□□□□□ -0.673e-8■□□□□ 10.1
U2AF1Q01081 HGD-203ENST00000470321 528 ntTSL 39.99□□□□□ -0.819e-15■□□□□ 10.1
U2AF1Q01081 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.771e-6■□□□□ 10.1
U2AF1Q01081 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.71e-6■□□□□ 10.1
U2AF1Q01081 AP1G2-227ENST00000556943 747 ntTSL 315.08■□□□□ 02e-8■□□□□ 10.1
U2AF1Q01081 ASGR1-203ENST00000570576 627 ntTSL 517.38■□□□□ 0.374e-10■□□□□ 10.1
U2AF1Q01081 EWSR1-212ENST00000444626 560 ntTSL 519.12■□□□□ 0.654e-17■□□□□ 10
U2AF1Q01081 EWSR1-213ENST00000447973 582 ntTSL 418.39■□□□□ 0.534e-17■□□□□ 10
U2AF1Q01081 EWSR1-210ENST00000436425 553 ntTSL 417.75■□□□□ 0.434e-17■□□□□ 10
U2AF1Q01081 EWSR1-220ENST00000493426 581 ntTSL 38.17□□□□□ -1.14e-17■□□□□ 10
U2AF1Q01081 EWSR1-219ENST00000485037 479 ntTSL 57.79□□□□□ -1.164e-17■□□□□ 10
U2AF1Q01081 PATL1-202ENST00000531919 440 ntTSL 53.53□□□□□ -1.844e-9■□□□□ 10
U2AF1Q01081 AP1G2-223ENST00000556277 891 ntTSL 521.83■■□□□ 1.092e-7■□□□□ 10
U2AF1Q01081 SNHG16-207ENST00000590435 1947 ntTSL 5 BASIC12.9□□□□□ -0.343e-26■□□□□ 10
U2AF1Q01081 SNHG16-201ENST00000448136 3607 ntTSL 1 (best) BASIC12.52□□□□□ -0.43e-26■□□□□ 10
U2AF1Q01081 SNHG16-202ENST00000493536 2424 ntTSL 1 (best)11.65□□□□□ -0.543e-26■□□□□ 10
U2AF1Q01081 XPO1-211ENST00000451765 643 ntTSL 321.29■■□□□ 17e-9■□□□□ 10
U2AF1Q01081 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.927e-9■□□□□ 10
U2AF1Q01081 XPO1-205ENST00000422552 382 ntTSL 56.88□□□□□ -1.317e-9■□□□□ 10
U2AF1Q01081 XPO1-224ENST00000495003 568 ntTSL 26.04□□□□□ -1.447e-9■□□□□ 10
U2AF1Q01081 XPO1-204ENST00000420673 682 ntTSL 25.54□□□□□ -1.527e-9■□□□□ 10
U2AF1Q01081 XPO1-210ENST00000449444 579 ntTSL 45.46□□□□□ -1.547e-9■□□□□ 10
U2AF1Q01081 MORF4L2-213ENST00000488331 326 ntTSL 26.6□□□□□ -1.359e-13■□□□□ 10
U2AF1Q01081 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.765e-9■□□□□ 10
U2AF1Q01081 XPO1-206ENST00000428210 6776 ntTSL 217.21■□□□□ 0.355e-9■□□□□ 10
U2AF1Q01081 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.565e-9■□□□□ 10
U2AF1Q01081 XPO1-212ENST00000457483 488 ntTSL 48.52□□□□□ -1.055e-9■□□□□ 10
U2AF1Q01081 XPO1-209ENST00000443240 565 ntTSL 45.81□□□□□ -1.485e-9■□□□□ 10
U2AF1Q01081 XPO1-207ENST00000436018 318 ntTSL 45.05□□□□□ -1.65e-9■□□□□ 10
U2AF1Q01081 XPO1-220ENST00000481214 720 ntTSL 23.06□□□□□ -1.925e-9■□□□□ 10
U2AF1Q01081 LTB4R2-203ENST00000530080 1108 ntTSL 1 (best)38.2■■■■□ 3.712e-7■□□□□ 10
U2AF1Q01081 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.79■■■■□ 3.642e-7■□□□□ 10
U2AF1Q01081 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.052e-7■□□□□ 10
U2AF1Q01081 LTB4R2-201ENST00000527924 710 ntTSL 332.51■■■□□ 2.792e-7■□□□□ 10
U2AF1Q01081 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.592e-7■□□□□ 10
U2AF1Q01081 ITPA-210ENST00000609835 924 ntTSL 1 (best)29.06■■■□□ 2.242e-7■□□□□ 10
U2AF1Q01081 EFNA1-204ENST00000474413 1083 ntTSL 324.11■■□□□ 1.452e-7■□□□□ 10
U2AF1Q01081 ITPA-204ENST00000460550 967 ntTSL 222.5■■□□□ 1.192e-7■□□□□ 10
U2AF1Q01081 LTB4R2-202ENST00000528054 3092 ntBASIC22.22■■□□□ 1.152e-7■□□□□ 10
U2AF1Q01081 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC22.05■■□□□ 1.122e-7■□□□□ 10
U2AF1Q01081 ITPA-208ENST00000483354 1028 ntTSL 322.05■■□□□ 1.122e-7■□□□□ 10
U2AF1Q01081 ITPA-209ENST00000490838 977 ntTSL 221.46■■□□□ 1.032e-7■□□□□ 10
U2AF1Q01081 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.82e-7■□□□□ 10
U2AF1Q01081 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.07■□□□□ 0.82e-7■□□□□ 10
U2AF1Q01081 EFNA1-203ENST00000469878 1288 ntTSL 318.11■□□□□ 0.492e-7■□□□□ 10
U2AF1Q01081 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC16.87■□□□□ 0.292e-7■□□□□ 10
U2AF1Q01081 ITPA-205ENST00000460676 488 ntTSL 312.88□□□□□ -0.352e-7■□□□□ 10
U2AF1Q01081 EFNA1-205ENST00000497282 719 ntTSL 210.77□□□□□ -0.692e-7■□□□□ 10
U2AF1Q01081 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.984e-9■□□□□ 10
U2AF1Q01081 GPAT4-203ENST00000519853 768 ntTSL 519■□□□□ 0.634e-7■□□□□ 10
U2AF1Q01081 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.324e-7■□□□□ 10
U2AF1Q01081 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.34e-7■□□□□ 10
U2AF1Q01081 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.224e-7■□□□□ 10
U2AF1Q01081 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-7■□□□□ 10
U2AF1Q01081 LINC00969-312ENST00000628823 616 ntTSL 515.36■□□□□ 0.054e-7■□□□□ 10
U2AF1Q01081 LINC00969-235ENST00000598992 1005 ntTSL 515.08■□□□□ 04e-7■□□□□ 10
U2AF1Q01081 GPAT4-204ENST00000519921 997 ntTSL 514.71□□□□□ -0.054e-7■□□□□ 10
U2AF1Q01081 GPAT4-211ENST00000523906 664 ntTSL 514.37□□□□□ -0.114e-7■□□□□ 10
U2AF1Q01081 GPAT4-210ENST00000521806 873 ntTSL 514.19□□□□□ -0.144e-7■□□□□ 10
U2AF1Q01081 LINC00969-278ENST00000626870 851 ntTSL 5 BASIC14.11□□□□□ -0.154e-7■□□□□ 10
U2AF1Q01081 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.192e-9■□□□□ 10
U2AF1Q01081 SAT1-207ENST00000474223 1033 ntTSL 27.8□□□□□ -1.164e-6■□□□□ 10
U2AF1Q01081 SAT1-205ENST00000462639 826 ntTSL 24.4□□□□□ -1.714e-6■□□□□ 10
U2AF1Q01081 SNHG1-215ENST00000540904 594 ntTSL 512.36□□□□□ -0.431e-7■□□□□ 10
U2AF1Q01081 ACTR3-204ENST00000446821 818 ntTSL 322.03■■□□□ 1.126e-8■□□□□ 10
U2AF1Q01081 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.9■■□□□ 1.16e-8■□□□□ 10
U2AF1Q01081 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.246e-8■□□□□ 10
U2AF1Q01081 ACTR3-202ENST00000415792 676 ntTSL 3 BASIC15.64■□□□□ 0.096e-8■□□□□ 10
U2AF1Q01081 ACTR3-207ENST00000489779 545 ntTSL 24.91□□□□□ -1.626e-8■□□□□ 10
U2AF1Q01081 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.273e-12■□□□□ 10
U2AF1Q01081 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.183e-12■□□□□ 10
U2AF1Q01081 SSB-204ENST00000417292 545 ntTSL 318.32■□□□□ 0.523e-12■□□□□ 10
U2AF1Q01081 SSB-203ENST00000413002 674 ntTSL 317.63■□□□□ 0.413e-12■□□□□ 10
U2AF1Q01081 SSB-205ENST00000422006 2463 ntTSL 59.77□□□□□ -0.853e-12■□□□□ 10
U2AF1Q01081 SSB-210ENST00000474273 735 ntTSL 25.24□□□□□ -1.573e-12■□□□□ 10
U2AF1Q01081 SSB-208ENST00000468600 290 ntTSL 24.03□□□□□ -1.763e-12■□□□□ 10
U2AF1Q01081 SAFB-204ENST00000586934 995 ntTSL 524.94■■□□□ 1.585e-6■□□□□ 10
U2AF1Q01081 SAFB-207ENST00000589863 2708 ntTSL 221.82■■□□□ 1.085e-6■□□□□ 10
U2AF1Q01081 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.735e-6■□□□□ 10
U2AF1Q01081 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.725e-6■□□□□ 10
Retrieved 100 of 10,096 protein–RNA pairs in 42.5 ms