RNA–Protein interactions for RNA: ENST00000260956.8

SSB-201, Transcript of Sjogren syndrome antigen B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSB, Length 1,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSB-201ENST00000260956 NISCHQ9Y2I1 1504 aa40.06■■■■■ 4
SSB-201ENST00000260956 CCDC180Q9P1Z9 1646 aa35.37■■■■□ 3.25
SSB-201ENST00000260956 ABCC9O60706 1549 aa34.62■■■■□ 3.13
SSB-201ENST00000260956 DCAF8L2P0C7V8 631 aa33.47■■■□□ 2.95
SSB-201ENST00000260956 ZCCHC6Q5VYS8 1495 aaKnown RBP33.4■■■□□ 2.94
SSB-201ENST00000260956 NACADO15069 1562 aa33.26■■■□□ 2.91
SSB-201ENST00000260956 RB1CC1Q8TDY2 1594 aa33.24■■■□□ 2.91
SSB-201ENST00000260956 MYO15BQ96JP2 1530 aa33.12■■■□□ 2.89
SSB-201ENST00000260956 DCAF1Q9Y4B6 1507 aa33.07■■■□□ 2.88
SSB-201ENST00000260956 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
SSB-201ENST00000260956 PABPN1Q86U42 306 aaKnown RBP eCLIP32.47■■■□□ 2.79
SSB-201ENST00000260956 SCRIBQ14160 1630 aa32.43■■■□□ 2.78
SSB-201ENST00000260956 BICRAQ9NZM4 1560 aa32.38■■■□□ 2.77
SSB-201ENST00000260956 SHROOM4Q9ULL8 1493 aa31.97■■■□□ 2.71
SSB-201ENST00000260956 DNAJC5BQ9UF47 199 aa31.78■■■□□ 2.68
SSB-201ENST00000260956 EIF4G1Q04637 1599 aaKnown RBP31.44■■■□□ 2.62
SSB-201ENST00000260956 CECR2Q9BXF3 1484 aa31.29■■■□□ 2.6
SSB-201ENST00000260956 CC2D2AQ9P2K1 1620 aa31.27■■■□□ 2.6
SSB-201ENST00000260956 SMARCA4P51532 1647 aa31■■■□□ 2.55
SSB-201ENST00000260956 SUPT5HO00267 1087 aaKnown RBP30.98■■■□□ 2.55
SSB-201ENST00000260956 BAZ1AQ9NRL2 1556 aaPredicted RBP30.96■■■□□ 2.55
SSB-201ENST00000260956 MROH2BQ7Z745 1585 aa30.94■■■□□ 2.54
SSB-201ENST00000260956 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
SSB-201ENST00000260956 NCAPD3P42695 1498 aa30.77■■■□□ 2.52
SSB-201ENST00000260956 SMARCA2P51531 1590 aa30.7■■■□□ 2.51
SSB-201ENST00000260956 PEG3Q9GZU2 1588 aa30.68■■■□□ 2.5
SSB-201ENST00000260956 RSF1Q96T23 1441 aaPredicted RBP30.66■■■□□ 2.5
SSB-201ENST00000260956 WIZO95785 1651 aa30.58■■■□□ 2.49
SSB-201ENST00000260956 HMGXB3Q12766 1538 aa30.56■■■□□ 2.48
SSB-201ENST00000260956 BAZ1BQ9UIG0 1483 aaKnown RBP30.54■■■□□ 2.48
SSB-201ENST00000260956 TOP2AP11388 1531 aaKnown RBP30.19■■■□□ 2.42
SSB-201ENST00000260956 CHIC1Q5VXU3 224 aa30.15■■■□□ 2.42
SSB-201ENST00000260956 NESP48681 1621 aa30.07■■■□□ 2.4
SSB-201ENST00000260956 CCDC88BA6NC98 1476 aa29.93■■■□□ 2.38
SSB-201ENST00000260956 CADPSQ9ULU8 1353 aa29.9■■■□□ 2.38
SSB-201ENST00000260956 LAMC3Q9Y6N6 1575 aa29.84■■■□□ 2.37
SSB-201ENST00000260956 CFTRP13569 1480 aa29.75■■■□□ 2.35
SSB-201ENST00000260956 ERCC6Q03468 1493 aa29.72■■■□□ 2.35
SSB-201ENST00000260956 PDS5BQ9NTI5 1447 aa29.66■■■□□ 2.34
SSB-201ENST00000260956 KIF21AQ7Z4S6 1674 aa29.59■■■□□ 2.33
SSB-201ENST00000260956 FANCD2Q9BXW9 1451 aa29.54■■■□□ 2.32
SSB-201ENST00000260956 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
SSB-201ENST00000260956 CEP164Q9UPV0 1460 aa29.44■■■□□ 2.3
SSB-201ENST00000260956 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
SSB-201ENST00000260956 MRC2Q9UBG0 1479 aa29.36■■■□□ 2.29
SSB-201ENST00000260956 CUX2O14529 1486 aa29.31■■■□□ 2.28
SSB-201ENST00000260956 URB2Q14146 1524 aaKnown RBP29.28■■■□□ 2.28
SSB-201ENST00000260956 WDR62O43379 1518 aa29.26■■■□□ 2.27
SSB-201ENST00000260956 TOPBP1Q92547 1522 aa29.09■■■□□ 2.25
SSB-201ENST00000260956 TRIM41Q8WV44 630 aa29.05■■■□□ 2.24
SSB-201ENST00000260956 DNMBPQ6XZF7 1577 aa29.02■■■□□ 2.24
SSB-201ENST00000260956 CUX1P39880 1505 aa28.99■■■□□ 2.23
SSB-201ENST00000260956 ABCC8Q09428 1581 aa28.98■■■□□ 2.23
SSB-201ENST00000260956 LOC105371045A0A1W2PR82 267 aa28.97■■■□□ 2.23
SSB-201ENST00000260956 POLA1P09884 1462 aaPredicted RBP28.88■■■□□ 2.21
SSB-201ENST00000260956 WRNQ14191 1432 aaPredicted RBP eCLIP28.83■■■□□ 2.21
SSB-201ENST00000260956 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.21
SSB-201ENST00000260956 IFT140Q96RY7 1462 aa28.81■■■□□ 2.2
SSB-201ENST00000260956 RAD54L2Q9Y4B4 1467 aa28.81■■■□□ 2.2
SSB-201ENST00000260956 ZNF608Q9ULD9 1512 aaPredicted RBP28.8■■■□□ 2.2
SSB-201ENST00000260956 SYNJ1O43426 1573 aa28.79■■■□□ 2.2
SSB-201ENST00000260956 TARBP1Q13395 1621 aaKnown RBP28.76■■■□□ 2.2
SSB-201ENST00000260956 SOGA1O94964 1423 aa28.75■■■□□ 2.19
SSB-201ENST00000260956 TOP2BQ02880 1626 aa28.72■■■□□ 2.19
SSB-201ENST00000260956 BIVM-ERCC5R4GMW8 1640 aa28.68■■■□□ 2.18
SSB-201ENST00000260956 AQRO60306 1485 aaKnown RBP eCLIP28.66■■■□□ 2.182e-8■■■■□ 22.6
SSB-201ENST00000260956 TDRD9Q8NDG6 1382 aaKnown RBP28.64■■■□□ 2.18
SSB-201ENST00000260956 EIF4G3O43432 1585 aaKnown RBP28.58■■■□□ 2.17
SSB-201ENST00000260956 FAM9AQ8IZU1 332 aaPredicted RBP28.55■■■□□ 2.16
SSB-201ENST00000260956 ABCA10Q8WWZ4 1543 aa28.53■■■□□ 2.16
SSB-201ENST00000260956 WDR97A6NE52 1622 aa28.51■■■□□ 2.15
SSB-201ENST00000260956 GAPVD1Q14C86 1478 aa28.41■■■□□ 2.14
SSB-201ENST00000260956 ABCA5Q8WWZ7 1642 aa28.39■■■□□ 2.13
SSB-201ENST00000260956 EEA1Q15075 1411 aa28.38■■■□□ 2.13
SSB-201ENST00000260956 GRIN2BQ13224 1484 aa28.35■■■□□ 2.13
SSB-201ENST00000260956 SNAPC4Q5SXM2 1469 aa28.33■■■□□ 2.13
SSB-201ENST00000260956 DNAJC5Q9H3Z4 198 aa28.32■■■□□ 2.12
SSB-201ENST00000260956 RUSC2Q8N2Y8 1516 aa28.29■■■□□ 2.12
SSB-201ENST00000260956 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
SSB-201ENST00000260956 PCGF6Q9BYE7 350 aa28.25■■■□□ 2.11
SSB-201ENST00000260956 FBLN2P98095 1184 aa28.23■■■□□ 2.11
SSB-201ENST00000260956 MAGI1Q96QZ7 1491 aaPredicted RBP28.23■■■□□ 2.11
SSB-201ENST00000260956 OSCARQ8IYS5 282 aa28.21■■■□□ 2.11
SSB-201ENST00000260956 KIF27Q86VH2 1401 aa28.18■■■□□ 2.1
SSB-201ENST00000260956 CHD1O14646 1710 aa28.16■■■□□ 2.1
SSB-201ENST00000260956 IGF1RP08069 1367 aa28.16■■■□□ 2.1
SSB-201ENST00000260956 ERICH3Q5RHP9 1530 aa28.15■■■□□ 2.1
SSB-201ENST00000260956 CHMP7Q8WUX9 453 aaPredicted RBP28.15■■■□□ 2.1
SSB-201ENST00000260956 SYNJ2O15056 1496 aa28.14■■■□□ 2.1
SSB-201ENST00000260956 KIF21BO75037 1637 aa28.12■■■□□ 2.09
SSB-201ENST00000260956 TRIM26Q12899 539 aaPredicted RBP28.1■■■□□ 2.09
SSB-201ENST00000260956 HRCP23327 699 aa28.09■■■□□ 2.09
SSB-201ENST00000260956 ADAMTS12P58397 1594 aa28.09■■■□□ 2.09
SSB-201ENST00000260956 CSRNP3Q8WYN3 585 aa28.09■■■□□ 2.09
SSB-201ENST00000260956 TNIKQ9UKE5 1360 aa28.09■■■□□ 2.09
SSB-201ENST00000260956 EHMT2Q96KQ7 1210 aa28.08■■■□□ 2.09
SSB-201ENST00000260956 FHAD1B1AJZ9 1412 aa28.07■■■□□ 2.08
SSB-201ENST00000260956 GOLGA3Q08378 1498 aa28.05■■■□□ 2.08
SSB-201ENST00000260956 GRIN2AQ12879 1464 aa28.01■■■□□ 2.07
SSB-201ENST00000260956 CEP162Q5TB80 1403 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms