RNA–Protein interactions for RNA: ENST00000468600.1

SSB-208, Transcript of Sjogren syndrome antigen B, humanhuman

TSL 2

Gene SSB, Length 290 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSB-208ENST00000468600 AEBP2Q6ZN18 517 aaPredicted RBP29.46■■■□□ 2.31
SSB-208ENST00000468600 CHIC1Q5VXU3 224 aa27.39■■□□□ 1.98
SSB-208ENST00000468600 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
SSB-208ENST00000468600 PHF23Q9BUL5 403 aaPredicted RBP24.72■■□□□ 1.55
SSB-208ENST00000468600 FOXD1Q16676 465 aa23.54■■□□□ 1.36
SSB-208ENST00000468600 POTEDQ86YR6 584 aa22.74■■□□□ 1.23
SSB-208ENST00000468600 MSH5O43196 834 aa22.18■■□□□ 1.14
SSB-208ENST00000468600 PIAS4Q8N2W9 510 aaPredicted RBP21.81■■□□□ 1.08
SSB-208ENST00000468600 PPP6R1Q9UPN7 881 aa21.58■■□□□ 1.05
SSB-208ENST00000468600 PLPPR3Q6T4P5 718 aa21.51■■□□□ 1.03
SSB-208ENST00000468600 ADRA2BP18089 450 aa21.45■■□□□ 1.02
SSB-208ENST00000468600 MAPK8IP2Q13387 824 aaPredicted RBP19.89■□□□□ 0.77
SSB-208ENST00000468600 DMRT2Q9Y5R5 561 aa19.86■□□□□ 0.77
SSB-208ENST00000468600 SCAF1Q9H7N4 1312 aaKnown RBP19.5■□□□□ 0.71
SSB-208ENST00000468600 CACNB1Q02641 598 aaPredicted RBP19.4■□□□□ 0.7
SSB-208ENST00000468600 DCAF8L1A6NGE4 600 aa19■□□□□ 0.63
SSB-208ENST00000468600 RNF39Q9H2S5 420 aa18.94■□□□□ 0.62
SSB-208ENST00000468600 HOXD11P31277 338 aaPredicted RBP18.89■□□□□ 0.61
SSB-208ENST00000468600 PPP4R3CPQ6ZMV5 832 aa18.8■□□□□ 0.6
SSB-208ENST00000468600 C1QBPQ07021 282 aaKnown RBP18.57■□□□□ 0.56
SSB-208ENST00000468600 CNKSR2Q8WXI2 1034 aa18.56■□□□□ 0.56
SSB-208ENST00000468600 RNF216Q9NWF9 866 aaPredicted RBP18.56■□□□□ 0.56
SSB-208ENST00000468600 DNAJC5BQ9UF47 199 aa18.33■□□□□ 0.52
SSB-208ENST00000468600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.462e-9■■■□□ 17
SSB-208ENST00000468600 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
SSB-208ENST00000468600 NPM3O75607 178 aaKnown RBP17.67■□□□□ 0.42
SSB-208ENST00000468600 POTEHQ6S545 545 aa17.67■□□□□ 0.42
SSB-208ENST00000468600 U3KPZ7 1027 aaPredicted RBP17.58■□□□□ 0.4
SSB-208ENST00000468600 DSG3P32926 999 aa17.52■□□□□ 0.4
SSB-208ENST00000468600 SPINK5Q9NQ38 1064 aaPredicted RBP17.51■□□□□ 0.39
SSB-208ENST00000468600 CAPN15O75808 1086 aa17.42■□□□□ 0.38
SSB-208ENST00000468600 SLC4A2P04920 1241 aa17.07■□□□□ 0.32
SSB-208ENST00000468600 ABCB7O75027 752 aa17.02■□□□□ 0.32
SSB-208ENST00000468600 TRHP20396 242 aaPredicted RBP17.01■□□□□ 0.31
SSB-208ENST00000468600 ZNF219Q9P2Y4 722 aaPredicted RBP16.94■□□□□ 0.3
SSB-208ENST00000468600 APLP2Q06481 763 aa16.87■□□□□ 0.29
SSB-208ENST00000468600 KCNA4P22459 653 aa16.82■□□□□ 0.28
SSB-208ENST00000468600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.74■□□□□ 0.27
SSB-208ENST00000468600 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
SSB-208ENST00000468600 SAMD1Q6SPF0 538 aaPredicted RBP16.66■□□□□ 0.26
SSB-208ENST00000468600 RBM42Q9BTD8 480 aaKnown RBP16.66■□□□□ 0.26
SSB-208ENST00000468600 CHRDL2Q6WN34 429 aa16.59■□□□□ 0.25
SSB-208ENST00000468600 POLA2Q14181 598 aa16.42■□□□□ 0.22
SSB-208ENST00000468600 MYCNP04198 464 aaPredicted RBP16.32■□□□□ 0.2
SSB-208ENST00000468600 SP7Q8TDD2 431 aaPredicted RBP16.28■□□□□ 0.2
SSB-208ENST00000468600 AKT1S1Q96B36 256 aa16.18■□□□□ 0.18
SSB-208ENST00000468600 PIP4P2Q8N4L2 257 aa16.09■□□□□ 0.17
SSB-208ENST00000468600 ATF5Q9Y2D1 282 aaPredicted RBP16.07■□□□□ 0.16
SSB-208ENST00000468600 REM2Q8IYK8 340 aaPredicted RBP16.06■□□□□ 0.16
SSB-208ENST00000468600 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
SSB-208ENST00000468600 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
SSB-208ENST00000468600 PITPNM1O00562 1244 aa15.92■□□□□ 0.14
SSB-208ENST00000468600 HAX1O00165 279 aa15.88■□□□□ 0.13
SSB-208ENST00000468600 FXR2P51116 673 aaKnown RBP eCLIP15.88■□□□□ 0.13
SSB-208ENST00000468600 FOXD4L1Q9NU39 408 aa15.83■□□□□ 0.12
SSB-208ENST00000468600 EVX2Q03828 476 aa15.75■□□□□ 0.11
SSB-208ENST00000468600 SLC4A1APQ9BWU0 796 aaKnown RBP15.7■□□□□ 0.1
SSB-208ENST00000468600 ZBTB22O15209 634 aa15.51■□□□□ 0.07
SSB-208ENST00000468600 SPDYE2BA6NHP3 402 aa15.5■□□□□ 0.07
SSB-208ENST00000468600 SPDYE6P0CI01 402 aa15.5■□□□□ 0.07
SSB-208ENST00000468600 SPDYE2Q495Y8 402 aa15.5■□□□□ 0.07
SSB-208ENST00000468600 PRKAR2AP13861 404 aaKnown RBP15.46■□□□□ 0.07
SSB-208ENST00000468600 C19orf67A6NJJ6 358 aa15.4■□□□□ 0.06
SSB-208ENST00000468600 ATXN8OSP0DMR3 200 aa15.38■□□□□ 0.05
SSB-208ENST00000468600 SPDYE1Q8NFV5 336 aaPredicted RBP15.36■□□□□ 0.05
SSB-208ENST00000468600 FBLN2P98095 1184 aa15.35■□□□□ 0.05
SSB-208ENST00000468600 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
SSB-208ENST00000468600 GABBR2O75899 941 aa15.31■□□□□ 0.04
SSB-208ENST00000468600 MKRN4PQ13434 485 aaPredicted RBP15.3■□□□□ 0.04
SSB-208ENST00000468600 SSUH2Q9Y2M2 353 aa15.28■□□□□ 0.04
SSB-208ENST00000468600 LHX8Q68G74 356 aa15.24■□□□□ 0.03
SSB-208ENST00000468600 ZNF692Q9BU19 519 aaPredicted RBP15.19■□□□□ 0.02
SSB-208ENST00000468600 CHADLQ6NUI6 762 aa15.18■□□□□ 0.02
SSB-208ENST00000468600 POTEIP0CG38 1075 aa15.04■□□□□ -0
SSB-208ENST00000468600 PRR29P0C7W0 189 aa15□□□□□ -0.01
SSB-208ENST00000468600 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
SSB-208ENST00000468600 CD44P16070 742 aaKnown RBP14.93□□□□□ -0.02
SSB-208ENST00000468600 FARP1Q9Y4F1 1045 aaPredicted RBP14.88□□□□□ -0.03
SSB-208ENST00000468600 CLCN6P51797 869 aa14.77□□□□□ -0.05
SSB-208ENST00000468600 PLSCR2Q9NRY7 297 aa14.74□□□□□ -0.05
SSB-208ENST00000468600 ZNF579Q8NAF0 562 aaKnown RBP14.71□□□□□ -0.05
SSB-208ENST00000468600 DCBLD2Q96PD2 775 aa14.7□□□□□ -0.06
SSB-208ENST00000468600 ZRANB1Q9UGI0 708 aa14.61□□□□□ -0.07
SSB-208ENST00000468600 GALR2O43603 387 aaPredicted RBP14.58□□□□□ -0.08
SSB-208ENST00000468600 OTUD5Q96G74 571 aa14.57□□□□□ -0.08
SSB-208ENST00000468600 CREBZFQ9NS37 354 aa14.57□□□□□ -0.08
SSB-208ENST00000468600 POTEB2H3BUK9 544 aa14.53□□□□□ -0.08
SSB-208ENST00000468600 PHF12Q96QT6 1004 aa14.42□□□□□ -0.1
SSB-208ENST00000468600 POTEMA6NI47 508 aa14.4□□□□□ -0.1
SSB-208ENST00000468600 PELP1Q8IZL8 1130 aaKnown RBP14.38□□□□□ -0.11
SSB-208ENST00000468600 STAG3Q9UJ98 1225 aa14.37□□□□□ -0.11
SSB-208ENST00000468600 POTEGQ6S5H5 508 aa14.34□□□□□ -0.11
SSB-208ENST00000468600 CSRNP3Q8WYN3 585 aa14.32□□□□□ -0.12
SSB-208ENST00000468600 PAK3O75914 559 aaPredicted RBP14.3□□□□□ -0.12
SSB-208ENST00000468600 MNX1P50219 401 aaPredicted RBP14.28□□□□□ -0.12
SSB-208ENST00000468600 POTEJP0CG39 1038 aa14.25□□□□□ -0.13
SSB-208ENST00000468600 ASTLQ6HA08 431 aaPredicted RBP14.22□□□□□ -0.13
SSB-208ENST00000468600 METRNQ9UJH8 293 aa14.22□□□□□ -0.13
SSB-208ENST00000468600 MS4A3Q96HJ5 214 aa14.21□□□□□ -0.13
SSB-208ENST00000468600 SPDYE4A6NLX3 237 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 208 ms