RNA–Protein interactions for RNA: ENST00000409333.1

SSB-202, Transcript of Sjogren syndrome antigen B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSB, Length 1,782 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSB-202ENST00000409333 NISCHQ9Y2I1 1504 aa39.34■■■■□ 3.89
SSB-202ENST00000409333 CCDC180Q9P1Z9 1646 aa34.63■■■■□ 3.13
SSB-202ENST00000409333 ABCC9O60706 1549 aa33.05■■■□□ 2.88
SSB-202ENST00000409333 ZCCHC6Q5VYS8 1495 aaKnown RBP32.96■■■□□ 2.87
SSB-202ENST00000409333 DCAF1Q9Y4B6 1507 aa32.53■■■□□ 2.8
SSB-202ENST00000409333 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
SSB-202ENST00000409333 MYO15BQ96JP2 1530 aa32.3■■■□□ 2.76
SSB-202ENST00000409333 NACADO15069 1562 aa32.27■■■□□ 2.76
SSB-202ENST00000409333 RB1CC1Q8TDY2 1594 aa32.12■■■□□ 2.73
SSB-202ENST00000409333 SCRIBQ14160 1630 aa31.73■■■□□ 2.67
SSB-202ENST00000409333 SHROOM4Q9ULL8 1493 aa31.7■■■□□ 2.67
SSB-202ENST00000409333 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
SSB-202ENST00000409333 BICRAQ9NZM4 1560 aa31.19■■■□□ 2.58
SSB-202ENST00000409333 PABPN1Q86U42 306 aaKnown RBP eCLIP31■■■□□ 2.55
SSB-202ENST00000409333 CECR2Q9BXF3 1484 aa30.59■■■□□ 2.49
SSB-202ENST00000409333 BAZ1AQ9NRL2 1556 aaPredicted RBP30.42■■■□□ 2.46
SSB-202ENST00000409333 SMARCA4P51532 1647 aa30.39■■■□□ 2.46
SSB-202ENST00000409333 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
SSB-202ENST00000409333 RSF1Q96T23 1441 aaPredicted RBP30.29■■■□□ 2.44
SSB-202ENST00000409333 EIF4G1Q04637 1599 aaKnown RBP30.27■■■□□ 2.44
SSB-202ENST00000409333 SUPT5HO00267 1087 aaKnown RBP30.22■■■□□ 2.43
SSB-202ENST00000409333 WIZO95785 1651 aa30.17■■■□□ 2.42
SSB-202ENST00000409333 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
SSB-202ENST00000409333 CC2D2AQ9P2K1 1620 aa29.96■■■□□ 2.39
SSB-202ENST00000409333 SMARCA2P51531 1590 aa29.94■■■□□ 2.38
SSB-202ENST00000409333 ATAD2BQ9ULI0 1458 aa29.93■■■□□ 2.38
SSB-202ENST00000409333 TOP2AP11388 1531 aaKnown RBP29.8■■■□□ 2.36
SSB-202ENST00000409333 BAZ1BQ9UIG0 1483 aaKnown RBP29.75■■■□□ 2.35
SSB-202ENST00000409333 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
SSB-202ENST00000409333 HMGXB3Q12766 1538 aa29.73■■■□□ 2.35
SSB-202ENST00000409333 DNAJC5BQ9UF47 199 aa29.5■■■□□ 2.31
SSB-202ENST00000409333 CCDC88BA6NC98 1476 aa29.44■■■□□ 2.3
SSB-202ENST00000409333 PRDM2Q13029 1718 aa29.01■■■□□ 2.23
SSB-202ENST00000409333 CFTRP13569 1480 aa28.97■■■□□ 2.23
SSB-202ENST00000409333 CADPSQ9ULU8 1353 aa28.92■■■□□ 2.22
SSB-202ENST00000409333 NESP48681 1621 aa28.88■■■□□ 2.21
SSB-202ENST00000409333 LAMC3Q9Y6N6 1575 aa28.87■■■□□ 2.21
SSB-202ENST00000409333 ABCC8Q09428 1581 aa28.73■■■□□ 2.19
SSB-202ENST00000409333 CHIC1Q5VXU3 224 aa28.69■■■□□ 2.18
SSB-202ENST00000409333 KIF21AQ7Z4S6 1674 aa28.66■■■□□ 2.18
SSB-202ENST00000409333 FANCD2Q9BXW9 1451 aa28.64■■■□□ 2.18
SSB-202ENST00000409333 PDS5BQ9NTI5 1447 aa28.57■■■□□ 2.16
SSB-202ENST00000409333 WRNQ14191 1432 aaPredicted RBP eCLIP28.53■■■□□ 2.16
SSB-202ENST00000409333 SYNJ1O43426 1573 aa28.52■■■□□ 2.16
SSB-202ENST00000409333 CEP164Q9UPV0 1460 aa28.52■■■□□ 2.16
SSB-202ENST00000409333 BIVM-ERCC5R4GMW8 1640 aa28.45■■■□□ 2.14
SSB-202ENST00000409333 CUX1P39880 1505 aa28.45■■■□□ 2.14
SSB-202ENST00000409333 TRIM41Q8WV44 630 aa28.45■■■□□ 2.14
SSB-202ENST00000409333 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
SSB-202ENST00000409333 ERCC6Q03468 1493 aa28.36■■■□□ 2.13
SSB-202ENST00000409333 DNMBPQ6XZF7 1577 aa28.35■■■□□ 2.13
SSB-202ENST00000409333 URB2Q14146 1524 aaKnown RBP28.33■■■□□ 2.13
SSB-202ENST00000409333 TOPBP1Q92547 1522 aa28.3■■■□□ 2.12
SSB-202ENST00000409333 MRC2Q9UBG0 1479 aa28.29■■■□□ 2.12
SSB-202ENST00000409333 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
SSB-202ENST00000409333 WDR62O43379 1518 aa28.2■■■□□ 2.1
SSB-202ENST00000409333 FGD5Q6ZNL6 1462 aa28.19■■■□□ 2.1
SSB-202ENST00000409333 POLA1P09884 1462 aaPredicted RBP28.12■■■□□ 2.09
SSB-202ENST00000409333 SOGA1O94964 1423 aa28.03■■■□□ 2.08
SSB-202ENST00000409333 RAD54L2Q9Y4B4 1467 aa28.02■■■□□ 2.08
SSB-202ENST00000409333 WDR97A6NE52 1622 aa28.01■■■□□ 2.07
SSB-202ENST00000409333 RUSC2Q8N2Y8 1516 aa27.97■■■□□ 2.07
SSB-202ENST00000409333 TARBP1Q13395 1621 aaKnown RBP27.97■■■□□ 2.07
SSB-202ENST00000409333 CUX2O14529 1486 aa27.97■■■□□ 2.07
SSB-202ENST00000409333 FAM9AQ8IZU1 332 aaPredicted RBP27.92■■■□□ 2.06
SSB-202ENST00000409333 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
SSB-202ENST00000409333 EEA1Q15075 1411 aa27.85■■■□□ 2.05
SSB-202ENST00000409333 IFT140Q96RY7 1462 aa27.84■■■□□ 2.05
SSB-202ENST00000409333 KIF27Q86VH2 1401 aa27.83■■■□□ 2.05
SSB-202ENST00000409333 ABCA5Q8WWZ7 1642 aa27.81■■■□□ 2.04
SSB-202ENST00000409333 TDRD9Q8NDG6 1382 aaKnown RBP27.74■■■□□ 2.03
SSB-202ENST00000409333 ZNF608Q9ULD9 1512 aaPredicted RBP27.73■■■□□ 2.03
SSB-202ENST00000409333 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
SSB-202ENST00000409333 EIF4G3O43432 1585 aaKnown RBP27.71■■■□□ 2.03
SSB-202ENST00000409333 CSRNP3Q8WYN3 585 aa27.7■■■□□ 2.02
SSB-202ENST00000409333 GAPVD1Q14C86 1478 aa27.69■■■□□ 2.02
SSB-202ENST00000409333 AQRO60306 1485 aaKnown RBP eCLIP27.67■■■□□ 2.022e-8■■■□□ 17.6
SSB-202ENST00000409333 KIF21BO75037 1637 aa27.62■■■□□ 2.01
SSB-202ENST00000409333 IGF1RP08069 1367 aa27.62■■■□□ 2.01
SSB-202ENST00000409333 ERICH3Q5RHP9 1530 aa27.61■■■□□ 2.01
SSB-202ENST00000409333 CUL7Q14999 1698 aa27.58■■■□□ 2.01
SSB-202ENST00000409333 LOC105371045A0A1W2PR82 267 aa27.57■■■□□ 2
SSB-202ENST00000409333 EHMT2Q96KQ7 1210 aa27.55■■■□□ 2
SSB-202ENST00000409333 PRXQ9BXM0 1461 aa27.55■■■□□ 2
SSB-202ENST00000409333 GRIN2BQ13224 1484 aa27.54■■■□□ 2
SSB-202ENST00000409333 RAPGEF2Q9Y4G8 1499 aa27.49■■□□□ 1.99
SSB-202ENST00000409333 GOLGA3Q08378 1498 aa27.48■■□□□ 1.99
SSB-202ENST00000409333 ADAMTS12P58397 1594 aa27.47■■□□□ 1.99
SSB-202ENST00000409333 CARMIL1Q5VZK9 1371 aa27.47■■□□□ 1.99
SSB-202ENST00000409333 SNAPC4Q5SXM2 1469 aa27.44■■□□□ 1.98
SSB-202ENST00000409333 MAGI1Q96QZ7 1491 aaPredicted RBP27.38■■□□□ 1.97
SSB-202ENST00000409333 FHAD1B1AJZ9 1412 aa27.36■■□□□ 1.97
SSB-202ENST00000409333 UBTFP17480 764 aaKnown RBP27.3■■□□□ 1.96
SSB-202ENST00000409333 CTTNBP2Q8WZ74 1663 aa27.28■■□□□ 1.96
SSB-202ENST00000409333 SYNJ2O15056 1496 aa27.27■■□□□ 1.96
SSB-202ENST00000409333 TNIKQ9UKE5 1360 aa27.26■■□□□ 1.95
SSB-202ENST00000409333 CHD1O14646 1710 aa27.26■■□□□ 1.95
SSB-202ENST00000409333 GRIN2AQ12879 1464 aa27.22■■□□□ 1.95
SSB-202ENST00000409333 CHMP7Q8WUX9 453 aaPredicted RBP27.14■■□□□ 1.94
SSB-202ENST00000409333 FBLN2P98095 1184 aa27.14■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms